RNA id: TU687600


Basic Information

Item Value
RNA id TU687600
length 2073
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC110527711
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38260379 ~ 38267346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGCTGCTGACTAACACAGGGAAGGAGGACAACATTTGACAACAACATGGACCTTTGAAAATAACTGAGACTTCAACACAGTCTTGGACAACAGCAAACTGCAAACATGACAAATGtgtACTCGTTGGATGGGATTGTGGTATTTGGAATTCTGTTCATCTGTACATGTGCATACCTCAAGAAGGTGCCTCGCCTCAACAGCTGGCTACTCTCAGAAAAGAAAGGTGTGTGGGGGGTGTTCTATAAAGCTGCAGTGATTGGGACTAGACTCCACCATGCTGTGGCGATAACCTGTCTGACGATGGCATTGTACCTGGTCTCCTTAAAGTGACAGTGTCAGGCTGGGATGGACCAGACTGGACTAGGATGGACTGGAGTGGACCGGACATGGCCAGGCTTGGCTGGGCTGGATTGGCCTGTGCTGGTTTGCCACCCATGGACACTGTTTGGACAATGTGTGCCCAACACTCCCAATTTATTCACCCAGGACCTGTAAAGGATAAGGATAAGCCAATAGTGCCCCACATTAGGTAAATAAGATCCCTGTAGCTCACTGCACTCTTCTAAACCTGACATCATCCATCCCTGCATGACACAACTGTCATCCAGTTTACCCTGAGTTTCCTGTACAGATCTTATAGAACAGTGTTTCTATTCTTGAGGTGCACATTCTTTGTTCTGGCTCAACACTAACACATCTGATTCTACTGTTTAATTGCTCAACCAGTCACCAAGCCATTGAATAGTTGAATCGGGTGTGTTAGCTCTGGGCTGAAACAAAACCGTGGTCCACCTGGAATGGATTAGGGATCACAGTGATAGAGATGTCAGCAGGCTAAGTAGTGTCAGCATGCTGATGTACTCAGCACGCTCATGTGTTGAGTAGTATCTTTATTTAATACTGTTGTTAGCAGAAATTGTTGTTTAATAATTTTTATTATCATCTAATTACCATTCTCAACGGTTTATTCTGGGGAAAGGACTGGTATTAAGGAATAGCCTAAAATAATGTGGAAAATATTAATTCCTGTTTAAAGTCAGACTTCGGTTGTATATATTTAGGGGGGAAAGTCAGTATAATAGATTTTAAAAAGCTGTTTTCTGTAGAGCACCATAGAGAAGAGCATCACATGCATTGTTGTTAAGTCTAAATATCTCTTTGTTTATTCAAAGGTATTTTTTAACGTTAAAGTGGTTGTACGTTGTCATGATTATCGTCACTATCATTTTTCAACAACCTGGAATAACCCTGGGCCATAGTTAAAAGCTATAAGGTCACATGTTCAGGTAAACTCTTGGTTCCTTGCCAAATTTTCACAAACAACTAATATAGGAGAAATGTCTTGGTGTCCAGCTTAACCTCTTATTTTCTTTCAACCTCTGTTCTTCTTTTTTTTGCTCTGTAATTTATGTATGATTTCCCTGTTTGGAAAAACCACTACAGATTTCTGCACCAGTGCTTTGTGACTGGCCCGCTGTATGTTGTGTGACAATAGCGCTCATCATCTTTGGggaaaataaattttaaaaaattacttaAAACACCTTAACAGTGCTGTATGTTACATTTTAGTGAAAGATGCAATGAGAACCTCTGTCAATGAAAGTGTGCAACTCATGACCACAGCTCAATAACATGTACATTGTGGCGTTGTCTTAATCTACAGTAAGTTATAtatttaaaacctttatttaactaagcaagtcagttaagaacaaattcttatttacaatgacggtctacaccggccaaacccggacgacgctgggccaattttgcgccgccctatgggactcccaatcacggctgtttgtgatacagcctggattcaaactagggtgacgcctctagtactcagatgcagtgccttagaccgctgcctcACTCGGGAGCCCATTGTTGGAGAGATAGCAACCCTTAAAGCACTCTTGTATGATAATGGTGGGTTAAATTGTGGATGAGGGTAGAATAGACTGACAATATCCCTTTTCATTGCTTTCACCATTATGTTTTGTATACTTTAGAAATTATTATGTTAACTGGTGTTGATGACTGGGATTTCAAAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU687573 lncRNA upstream 120424 38139781 ~ 38140008 (+) True G603635
TU687572 lncRNA upstream 122039 38138079 ~ 38138393 (+) True G603634
TU687563 lncRNA upstream 127028 38133182 ~ 38133404 (+) True G603630
TU687559 lncRNA upstream 131369 38128783 ~ 38129063 (+) True G603626
TU687538 lncRNA upstream 154268 38105954 ~ 38106164 (+) True G603607
TU687604 lncRNA downstream 2052 38265550 ~ 38267253 (+) True LOC110527711
TU687656 lncRNA downstream 5561 38269059 ~ 38269382 (+) True G603709
TU688016 lncRNA downstream 12525 38276023 ~ 38276222 (+) True G604055
TU688018 lncRNA downstream 17042 38280540 ~ 38281016 (+) True G604057
TU688153 lncRNA downstream 260061 38523559 ~ 38530447 (+) True G604191
XM_021609163.2 mRNA upstream 90178 38162615 ~ 38170254 (+) True LOC110527709
XM_036984429.1 mRNA upstream 99534 38128380 ~ 38160898 (+) True LOC110527708
XM_021609158.2 mRNA upstream 219495 38035996 ~ 38040937 (+) True LOC110527704
XM_036983192.1 mRNA upstream 260794 37970142 ~ 37999638 (+) False LOC110527703
XM_021609174.2 mRNA downstream 426842 38690340 ~ 38704044 (+) True lhfpl5a
XM_021609189.2 mRNA downstream 927583 39191081 ~ 39201578 (+) True LOC110527727
XM_021609192.2 mRNA downstream 965203 39228701 ~ 39238479 (+) False LOC110527729
XM_021609193.2 mRNA downstream 965207 39228705 ~ 39240208 (+) True LOC110527729
XM_021609195.2 mRNA downstream 1028158 39291656 ~ 39308642 (+) False LOC110527730
TU686155 other upstream 1169676 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 1684360 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 3289027 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 3500774 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 4293677 33966289 ~ 33966755 (+) True G600013
TU688169 other downstream 235533 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 320976 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 1863036 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 1943071 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 1959677 40223175 ~ 40224171 (+) True G606464

Expression Profile