RNA id: TU687604


Basic Information

Item Value
RNA id TU687604
length 1704
lncRNA type read_through
GC content 0.41
exon number 1
gene id LOC110527711
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38260379 ~ 38267346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCAGCTGGAAAATTGCCAATACAGAAGCTCAGctgaaaacacacacagctctgttgGGCATCACTGGGCTTTGCAAATACGTCTACCAAACACAGACAGCGGGTGGGTTAAATCTCCcagcagaacagaacaggctCTCAATaatcaggggagaagagagaggccaACATTATACATTTTTAACCTCAATACAACTCCAAACACCATCAAGCTCTGAATGTATAATTCTGGGCCATTGTTCCTCATCAATAGGTAATAAGCACCATATTCATATCAATATAAtcactttcatcacattcaccaATAGGTCCACTTTCACTCAAAGACAGACCCAGGAATTTGTAAATATAGACAAGAATGAGGTGGATGAAATTATACCTTGAAGACAGAATGAAGTGTGTCAGttagcaatgagctgtcgcccactatgatgtgggcgtgccccaaggttCAATACTGGGGCTCCTTCTaattcagcctgtacattaattatctgccttctgtctgtacttgatctgaagttcaaatgtatgcagatgatatagTGATATGTGCCTGCAAAGAGCAaccaagctgcacaagaactcactattgtaatggtccaggttacaaagtggctcagtgactcatgtttgcatctcaatgtgaagaaaaaaaacagtctgcatgttcttcacaaagagggcaactgaTGCTACTgaaccagatgtctatgtgtcaggggagaagctccaagTGGTGTCTGATTTTAAGTAcattggcatcatacttgattccaaacTCTTTTAAAAAGCAAGTGAAAAAGGTAACTCAACCTAGCTATTTTCCGATTCATATAAAATTGTGACTActgaggtagcaaaactgtactatgatactcccccacttaacatactgcttgactagttgggcccaagcttgctgtacaacattaaaacccattGTCTATCTACAAACAGCCTCTCAAAGTGCTTCATAGGAAGcacaatagccatcatcactgtcacatcctcagaaagcatgagctcctgagttggaaaAATCTTGtgcaagatcctaaatggcctggctccccctccactcaggaCTTCTGTTAATTCAAAAAACCCAAAcccatggcagcagatccacaaggtctgccatgagaggtgactacAGTTGAAGGAAAAACACCTTTCGTCAATCTGCTTtttctgtgagagcttcccatgtctggaatacacctTGAGCAatgtcttcatgttttttgtGAAGTTGCGATAGGTGCAGTTGTGTGTGtcatcagacacacacaactgCACCTATCGCAACTTCacaaaaaacatgaagacatTGCTCAAGGCCAATCACACTTGTGAACATAATCACTAGCTGTGTATGGCTGCTTTCCATGTTATTTGTAGCTTTTGAGGTGTGAAAACACTTTGTTGCTATTATGTATTTTGTTGCTTTTTGTGCTATTGCTCTctctgcatgctacgtgttgcttgtcctatgttgctctgcgtgtgtttactgctcaatgattgtctgtattgttattgttttgaataacctgcccagggactgcggtggAAAATGAGCTAAAAATGGCTAAAATCGGCACTTTCACTGAAACGTTGATTATGGATATGTAAAAATAAACAAACTTGGGTCTCTTTATTGTCCTACCAGTAAGGTGAATACCAGTTCCTTTAAGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU687600 lncRNA upstream 2052 38260432 ~ 38263498 (+) False LOC110527711
TU687601 lncRNA upstream 2146 38260432 ~ 38263404 (+) False LOC110527711
TU687603 lncRNA upstream 2574 38260385 ~ 38262976 (+) False LOC110527711
TU687602 lncRNA upstream 2574 38260432 ~ 38262976 (+) False LOC110527711
TU687573 lncRNA upstream 125542 38139781 ~ 38140008 (+) True G603635
TU687656 lncRNA downstream 1806 38269059 ~ 38269382 (+) True G603709
TU688016 lncRNA downstream 8770 38276023 ~ 38276222 (+) True G604055
TU688018 lncRNA downstream 13287 38280540 ~ 38281016 (+) True G604057
TU688153 lncRNA downstream 256306 38523559 ~ 38530447 (+) True G604191
TU688230 lncRNA downstream 317221 38584474 ~ 38594822 (+) False G604258
XM_021609166.2 mRNA upstream 2024 38260392 ~ 38263526 (+) False LOC110527711
XM_021609163.2 mRNA upstream 95296 38162615 ~ 38170254 (+) True LOC110527709
XM_036984429.1 mRNA upstream 104652 38128380 ~ 38160898 (+) True LOC110527708
XM_021609158.2 mRNA upstream 224613 38035996 ~ 38040937 (+) True LOC110527704
XM_036983192.1 mRNA upstream 265912 37970142 ~ 37999638 (+) False LOC110527703
XM_021609174.2 mRNA downstream 423087 38690340 ~ 38704044 (+) True lhfpl5a
XM_021609189.2 mRNA downstream 923828 39191081 ~ 39201578 (+) True LOC110527727
XM_021609192.2 mRNA downstream 961448 39228701 ~ 39238479 (+) False LOC110527729
XM_021609193.2 mRNA downstream 961452 39228705 ~ 39240208 (+) True LOC110527729
XM_021609195.2 mRNA downstream 1024403 39291656 ~ 39308642 (+) False LOC110527730
TU686155 other upstream 1174794 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 1689478 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 3294145 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 3505892 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 4298795 33966289 ~ 33966755 (+) True G600013
TU688169 other downstream 231778 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 317221 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 1859281 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 1939316 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 1955922 40223175 ~ 40224171 (+) True G606464

Expression Profile