RNA id: XM_021609168.2


Basic Information

Item Value
RNA id XM_021609168.2
length 4712
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110527712
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38264371 ~ 38269527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTGCTTCTAATCCTAGAATTAGCCATGCTGGCAATTCATGTCTAGtgatttttatatttatttttatttttattatgtttCATAAGAAGAAAGGATATTTGTAGTGATATCCTATGCTTATTTGCTATTGTATTGTTatttgatatttaaaaaaaaaaaagataatttgACTGCGTGTGAACAGGGGCGAAATGAACGTAAAGGCTACACACAAAGATTTGTTCGTTTGTTTCAGTTAACGATTTTATTCATTTCCACCGACCAAAGAGCTCCAGGAGTTATACTGAACCAAATGGCTCGCGTTGTTTGTTAGCAAGCGAATTGTGAGCAGCAAATCATTGTTCCTCGATAGCTGTTGAGCTAGCCAGTCTGCTAACGTTTCGCATTTGTGTTAGCTACAGACAGAAGCAATGCCGAGGTAATTGTCATCAATGCATTCGACGCCTAGCGTTTTGTGACACTGTCAGtCTCCCCACCATGAAACTGGTTCGCCTCCTGTGTCGTCACAAGACGGCTCTGGCAATTGCAGGAGTCTGCCTATTTGCTGTAGTCGTCCTCTTCCTCGCCAAGTGTACCTCCGAGACCCTGAAACAGGGCCAGGTTGACCCTCCAGGCCTAGCACCCCACGCTGCCCACTCCCGGGCCAGAGCAGAGCACCCCAAGCCCCCCTCACGCCCCAAAGACCTCTCAGCCTTCCTTGTGGTCCTCATCACCACAGGACCCAAGTACACAGAGCGGCGGAGCATTATCCGCAGCACATGGCTGACTAAGAAGGACCCGGAGGTTCTAGCTATGTTTGTGGTGGGAACAGAGGGTCTACCGGCCGAGGATATGGAGAACCTCAACACAGAGCAGGGCCGACACAAAGACCTGCTCTTACTCCCCGAGCTGCGGGACTCGTATGAGAACCTGACCCTGAAGCTGCTGCACATGTACTCCTGGCTGGATCACAATGTAGACTTTAAGTTTGTTTTAAAAGCAGATGACGACACCTTCGCTCGCCTGGACCTGCTGAAGGAGGAGCTGAAGACTAAAGAACCCAGCCGGCTGTACTGGGGGTTCTTCTCAGGCTGCGGTCGTGTCAAAACTGCAGAGAAGTGGAGGGAGTCGGCTTGGGAGCTGTGTGACTACTACCTACCCTACGCCCTGGGTGGAGGCTATCTGCTCTCCTGCGACCTAATCCACTACGTGCGCATCAACGCTGCCTTCCTCAAGGTGTGGCAGAGCGAGGACGTGTCACTCGGGGCTTGGCTGGCCCCCGTGGACGTCAAACGGACGCACGACCCACGCTTCGACACAGAGTTCAAGTCAAGGGGCTGTAGTAATAAGTACCTGGTGACCCACAAGCAGAGCCTGGAGGATATGTTAGAGAAACAGCAGACACTGCAGAGAGATGGGAGGTTGTGTAAAGAAGAGGTTAAACTCAGACTGAGTTATGTATACGACTGGAGCGTCCCGCCATCCCAGTGCTGCCAGAGGAAGGATGGAGTACCCTGATAACCCCTGACCCTGTCCATCCTCACCAATATTTCCCCAGGCAGTATGGTGTTCTCCCTCAGCCTTGCTCTGCCGTCGTCCCCCACCTCCCCTCTTGTTCTGTTGCCCGTCCTCAACTAAAACATTTGTTGCCTTCAGTTTACATCCATAGAAGGTGTCTGTTATGGCAGCCCGCCTATGAAAAGACCTGAGGAAAACAATGTTCCCTTTTTATATGTTTACTTGTTTATTTATTCTGGAGCCCTCACGGACTAAAATGAAGCAAACTGGTACCACAGAATAGGACAGGAGtcaatgtatttattattaaCAGCATGTTGGGAGTGAGTGTACTTAAAGGAACTGGTATTCACCTTACTGGTAGGACAATAAAGAGACCCAAGTTTGTTTATTTTTACATATCCATAATCAACGTTTCAGTGAAAGTGCCGATTTTAGCCATTTTTAGCTCATTTTccaccgcagtccctgggcaggttattcaaaacaataacaatacagacaatcattgagcagtaaacacacgcagagcaacataggacaagcaacacgtagcatgcagagAGAGCAATAGCACAAAAAGCAACAAAATACATAATAGCAACAAAGTGTTTTCACACCTCAAAAGCTACAAATAACATGGAAAGCAGCCATACACAGCTAGTGATTATGTTCACAAGTGTGATTGGCCTTGAGCAatgtcttcatgttttttgtGAAGTTGCGATAGGTGcagttgtgtgtgtctgatgaCACACACAACTGCACCTATCGCAACTTCacaaaaaacatgaagacatTGCTCAaggtgtattccagacatgggaagctctcacagaaaAAGCAGATTGACGAAAGGTGTTTTTCCTTCAACTgtagtcacctctcatggcagaccttgtggatctgctgccatgggTTTGGGTTTTTTGAATTAACAGAAGtcctgagtggagggggagccaggccatttaggatcttgcaCAAGATTtttccaactcaggagctcatgctttctgaggatgtgacagtgatgatggctattgtgCTTCCTATGAAGCACTTTGAGAGGCTGTTTGTAGATAGACaatgggttttaatgttgtacagcaagcttgggcccaactagtcaagcagtatgttaagtgggggagtatcatagtacagttttgctacctcagTAGTCACAATTTTATATGAATCGGAAAATAGCTAGGTTGAGTTACCTTTTTCACTTGCTTTTTAAAAGAgtttggaatcaagtatgatgccaatgTACTTAAAATCAGACACCActtggagcttctcccctgacacatagacatctggttcAGTAGCAtcagttgccctctttgtgaagaacatgcagactgttttttttcttcacattgagatgcaaacatgagtcactgagccactttgtaacctggaccattacaatagtgagttcttgtgcagcttggtTGCTCTTTGCAGGCACATATCActatatcatctgcatacatttgaacttcagatcaagtacagacagaaggcagataattaatgtacaggctgaattAGAAGGAGCCCCAGTATTGaaccttggggcacgcccacatcatagtgggcgacagctcattgctaaCTGACACACTTCATTCTGTCTTCAAGGTATAATTTCATCCACCTCATTCTTGTCTATATTTACAAATTCCTGGGTCTGTCTTTGAGTGAAAGTGGACCTATtggtgaatgtgatgaaagtgaTTATATTGATATGAATATGGTGCTTATTACCTATTGATGAGGAACAATGGCCCAGAATTATACATTCAGAGCTTGATGGTGTTTGGAGTTGTATTGAGGTTAAAAATGTATAATGTtggcctctctcttctcccctgattATTGAGagcctgttctgttctgctgGGAGATTTAACCCACCCGCTGTCTGTGTTTGGTAGACGTATTTGCAAAGCCCAGTGATGCCcaacagagctgtgtgtgttttcagCTGAGCTTCTGTATTGGCAATTTTCCAGCTGGCATTACTTTTCAACAAACGAAAAAAATAACTGCTTCCATTAAAGATGTTGAAAGACATTCTATGACTGTCCTCTCCTCATtgtttgtttaaaacattttgaCCTATTGAGCATTTCATTGAAATGCTTTTGAAAAGTGTATTTTTGTAATAAAATCTTTATTAAGCAGTTATTTGTTGGAATAAAATGCCATCTACCTTTGTTACTAAGACAAAAGCCAGCAGACTTAGAGCTGTTTTGGCACAGTTTTCCAGAACTGAGATGGTACTCATATCAATATGTATACACCTATACTTATTGGTACTGTATAACTGTAATTTAGGAATAAATAGTATTATTCCACTACTGTAAGCTATATAACAACATTGTCTCAGCGGGCCTAATATGACAGTTAAATCTGGTCTCCCATTACAACCTGGTCGTGTTGACTGTTAACTGTTTCCACCATCTGTGACTGAGCATCAACTCGCACTGGTGGTCACGGTGTAGAGGAGATTCCAGGACGGGATTGGTCGGATTCCAGGATGGATGAGGTCATGGATAATGTCATCGTGGCCCTTGACAGACAGAGACGAACAAATGGGCCTTTCGACAGacgtagctccctgacagaggaagaggagattGTTACATTTTTAATAGGGCTGTCAAACGATAAATGCAATCGGATTAATCGCAGGATTTGCTGTTATTAATCCCGATTTATTGCAAATTCAGAATTTGCTTAAAAGTAAGCTGTAATTTAAGATTGAAAATCATTACAATCATTTTCGTCTTGATTTGGTCCAAAATCAGGTACATTGATAAAGCACACTTTATTTAACCTCAACTGTTTTTAGCTCTAAATGATGTTTAGTGTATTTAAAATGCTTTCAGACAATACGATTATTCACGGCAAAACAATATGTTGCACTACAATTACATAAAAGGTTAACTCAAGTTGACTGGTTAACTCTGACAGCCCTATTTTTTGTTAACCATAATTGCCTTAGTATTTACTGAAGATTACAAAGTAAATGGTTATTATGTAGTAATTGCTGGGGAAAGGAATAGGACACTTCATTGAGGTATTGTATGAGTCATCTTTAAGGTAATAAATTATTGTTTCCCATTACTATTCATGCTCTTTGGCAAGATGAAATGTTATTGCCAACAAAATGCACAATAAAGAACTCACCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU687923 lncRNA downstream 130073 38134066 ~ 38134298 (-) True G603962
TU687921 lncRNA downstream 131568 38132561 ~ 38132803 (-) True G603960
TU687917 lncRNA downstream 133821 38130076 ~ 38130550 (-) True G603956
TU687898 lncRNA downstream 163725 38100392 ~ 38100646 (-) True G603938
TU687852 lncRNA downstream 167967 38094441 ~ 38096404 (-) True LOC110527706
TU688010 lncRNA upstream 1164 38270689 ~ 38270930 (-) True G604049
TU688019 lncRNA upstream 10965 38280490 ~ 38280791 (-) True G604058
TU688472 lncRNA upstream 314768 38584293 ~ 38593820 (-) False G604484
TU688477 lncRNA upstream 314768 38584293 ~ 38588955 (-) False G604484
TU688487 lncRNA upstream 336932 38606457 ~ 38606722 (-) True G604491
XM_036983205.1 mRNA downstream 4049 38214031 ~ 38260322 (-) True LOC110528948
XM_036983203.1 mRNA downstream 4062 38214031 ~ 38260309 (-) False LOC110528948
XM_036983204.1 mRNA downstream 4265 38214031 ~ 38260106 (-) False LOC110528948
XM_036983201.1 mRNA downstream 64871 38170183 ~ 38199500 (-) True LOC110527710
XM_021609164.2 mRNA downstream 64937 38170183 ~ 38199434 (-) False LOC110527710
XM_036983206.1 mRNA upstream 34505 38304030 ~ 38499659 (-) False LOC110527714
XM_036983207.1 mRNA upstream 34505 38304030 ~ 38499669 (-) True LOC110527714
XM_036983210.1 mRNA upstream 262407 38531932 ~ 38659391 (-) False LOC110527715
XM_036983213.1 mRNA upstream 262407 38531932 ~ 38659391 (-) False LOC110527715
XM_036983208.1 mRNA upstream 262858 38532383 ~ 38659391 (-) False LOC110527715
TU684989 other downstream 2503101 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 3209143 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 3209238 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 3297585 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 3649496 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 319630 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 319892 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 321343 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 332805 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 793480 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile