RNA id: XM_036983207.1


Basic Information

Item Value
RNA id XM_036983207.1
length 5574
RNA type mRNA
GC content 0.44
exon number 20
gene id LOC110527714
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38304030 ~ 38499669 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtagtgtagaaacCGCGTTCTGCCTTCAGTCTCTGGTCCGCGCAGTCTGAGATCATCAGCCAGCGGTTGGAGTAGAGCTCTGCTTGACGCGCAAAGAGCAGGTCATCAGGCTACTCCCCTACAATGCGCTGCCTGTCAGCGGTGCGGCAACAGCTGTAGCTAGCGCGGTAGAGCGGCACGTCACTTTCATGGTCTCTCCAGCCAAAACTGCACTATCTTTGGACAGTTTGCTAAGTGCGCTTCTTCAGAGAAAGGCTGTTGGTGTCCGGTTTCCCtgaatacctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctggctggctcTCCCGGTCTTATCGCGGGGGGCTGGCGTGTGATCTGATCTCCGACCTGTCCTCGCGACTCACCGGGAGGGGGGACACGACACAATCACCACCCAACACGCGCTCGACTGGGGCCAGGCTGTGCGAGTCACGGATCGCTCCCGAGTCGCCCCGCGCGCTCGCCCTTGGGCTTGCGCCCATGGAGGGGGACGTCATGGACAAACTGGGGGACATGGCCTCGGTGTATGAGTTCGACCCGATCACCGGGAACATCCCCGCTACTAAAGTAGAGATCACCGTCTCATGCAGGAATCTACTAGATAAAGACACATTCTCCAAATCTGACCCATtgtgtgtgcTCTACACCCAAGGAGTGGAGACCAAGCAGTGGAGAGAGtttggGAGAACAGAGGTGATTGACAACACTCTAAACCCAGACTTTGTCAGGAAGTACATCCTGGACTATTTCTTTGAGGAGAAGCAGAATCTACGCTTTGACTTATATGATGTGGACTCTAAAAGCCCAGACCTGTCCAAACACgACTTCTTGGGTCAAGTGTTCTGTACCCTGGGGGAGATCGTGGGGTCACCTGCCAGTCGACTGGAGAAACCACTGGGGGGGATAGCTGGGAAGAAATGTGGCACCATAATTCTATCTGCAGAGGAGCTGGGAAACTGTAGAGACAGCGCAACGATGCAGTTCTGTGCCAACAAACTGGACAAGAAGGACTTCTTTGGCAAGTCAGATCCTTTCATGGTGTTCTACAGGAGCAACGAAGACGGAACGTTTACTATCTGCCATAAGACCGAGGTGGTGAAAAATACGTTGAATCCAGTTTGGCAGTCATTCACCATTCCAGTCAGAGCACTCTGCAATGGGGACTTTGACAGAACGATCAAGATAGAGGTGTACGACTGGGACCGAGATGGCAGcCATGACTTCATAGGCGAGTTCACCACTAGTTACCGGGAGCTGGCTCGAGGCCAGAGCCAGTTCAATGTCTATGAGGTGGTGAATATCAAAAAGAAAATGAAGAAAAAGAAATATGGGAATTCTGGAACGGTGACCCTCCTCTCCTTTTCAGTGGAATCAGAGTGCACCTTCCTGGATTACATCAAGGGAGGGACCCAGATCAATTTCACTGTGGCCATCGATTTCACTGCGTCTAATGGTAACCCATCCCAGTCCACTTCTCTACACTATATGAACCCATACCAGATGAATGCATACGCCATGGCCTTGAAGGCTGTAGGGGAGATCATCCAGGACTACGACAGTGATAAGATGTTCCCTGCCTTGGGCTTCGGAGCCAAGCTGCCCCCAGATGGACGGGTCTCACACGAGTTCCCACTGAACGGTAACATAGAGAACCCCTACTGTAACGGTATAGATGGCATCCTGGAGGCCTATCACGAGAGTCTGAAGACTGTTCAGCTCTACGGACCAACCAACTTCGCCCCCGTAGTCAACCACGTGGCCAGTTATGCTGCAGCGGTTCAGGACGGGTCCCAGTACTTCGTCCTCCTCATCATCACAGACGGAGTCATATCAGACATGGCTCAGACCAAGGAGGCCATCGTCAATGGGGCTAAACTGCCCATGTCCATCATTATCGTGGGAGTGGGACAGGCTGAGTTTGACGCCATGGTGGAGTTGGACGGTGATGACATCAGAATTTCATCCAGAGGGAAGCTtgcagagagagatattgtccagTTTGTCCCATTTAGAGACTACATGGACCGAACAGGAAATCACGTGTTAAGTATGGCCCGGCTAGCCAAGGATGTCCTGGCTGAGATCCCTGATCAGTTAATCTCCTATATGAAGAGTAGGGGTGTCAAACCAAACCCCACACCGCCTCCCTACACAccccctggacacacacaccacacacagatctGAGCCCACCACACAAACCTTTACACTGAGTACTGACGAGAGACGGAGTCAAAGATTTGCAGACCCTGGGAACTCTCTACTTCCTGATTGGAATGTTGGGACGGGAAGTGATGTAATAGGAAGTTGCTGAAGCAATAGGTGTTTGTGTCAGGACTCTCCCAGACAGGTGACTCTCTGGAGAAGACAACAGCATTTCTGTTCATTGTGATTCTATctattctgtctgtttctctgcgaAAGAGAGACGGCAATGGACAGACCATACAAGGACTTGTCTTTTTATCAACATACATGGGCCAGTGACTGTTTCTTCTTGTCTTGTTTGAGAGCGGGTGGGTGAAGGGGTCATGTGGGGTCATATTGTGGTTGAAACTTGTGCCTGTCTGTGATCTGGTTGTCTAACTGTAATGGGACAAGTGGAACTCTCATCTGAACTCTGATCTTTGACTTTTGACCTAGCTCGCCATTGGtgtattagagtgtgtgataaGGTGATGTTTTTGGATACTTTTCcattcatttttgttttgttttgttttgggccTAAGACACATTCCCATATTAATTTGTAGCTTTATGATTTAAGGTTGAAAAAAAGAAAAGTGTTTTCACCTTGTGAGTTTTCTTTTTTAGTCATTGAGTGTCTTTGCTCTTTGTACTCCCATAAGTTGTAGACTCTTCTCTTGCTTTCTATTTTAAAGCATGTTCGTATATAGGATGGAATTCCCCATATGTCTGTATTTATAATGTATCAAAAGTGGCATGGATATATAAGGATATATAATTAATATGTGACCATCCAGTTTGGATTTCTCAATTACAAACAAGGATAGTTTAACAATATGGAGAAGCACAAGGGAGAACTCATCATAGCTCTCTAAACCACTTAaccaccaccacaggaatgtAACTATGCACATCAGCGTTTGGACACACTAGAACCTGTCtgtgacatacatacatacatacatacatacatcagaAGTATTGCTTTATTTTTTTCAAGGGTTCTGATAGTTTACCGTGTCCTATATTTCATCAGTCAAAGAGTGAAAATATATACAACTCTTTCAACTActattttcttctctctctctctctccatctccccaatTCCCATAGTGAATGGATTTTTGTTTATTGACATTAAACTGCTGGATAAAGACAGCAAATGTATTCACTTGAATCACATTGAATTCCATTGAAACCTTTTCATAACCAACAATAACTCGCCCACCAGTCCTTtactgtccacccctctctctctctggtcacccaACAGCTTCTCTGCTCCCTGAGAATAAGCCATTATTGTGTTATAATCAGATGAAGCCAGGCAAATTAAATCAAGCTGAGGAGTATAGACAGTCTGGACACCTGCTGCACGGtgcacacatagacagacagacagagggacaaatCTCCTCAGCTAGCTAAATACTCTGTAGGCCTTAACGTACTGTAGACAGCATTCCAACCAAGCCTGATAAAACAACTAAGGTTGAACAATTCTGTTAACTTTTCCAAAATgtacaggttttccagaaatcctgcttTGAAAATTCCTGGAATCACAAGGAACATTCCTTGAAAACCTAGGACTTTTTGCAAAGTTACCGGAGTTTTGCAACCCTATTCACAGCTCTCTTCTCTTGGAGTCATACTCGCTAAGAGTACTGTATGTTTTGGAAATGGCTAAACCTGGTTCTGTACAGTGTTGTGTATAATATATGGGGATAAAGACAAATGGTATATCTGATATCTATACAGTTAATTATATGGCTTGTTTTTTCTTACTAAGTGGTGTGAACCTAGAGTAtcaggagtgagtgtgtgtgttcaataaTAAGAGTGGTTTACAACAGTACATATTCCTACTGATAAACTTTAAGGAAAGCACTTTATTCTATTCCTTAACAGGTGTACTGGTACTTCGACAGtatgtttatttatacatttttagaGATAGTGATGATCTTATTGATATATTATATGATTCACTTAATTTTTTCTGGAATTTGTATGATAAAAAGCCATTTATTCTGCCGACAACGCCACAATAATAGAAGTAGACTTGCACACTGACTTCAATGGGGATGTTATTCGTtctagtaattctatttctatggctacGCTATAAAAAAatagtatttatttttaaatgtttaactaggcaagtcagttaagaaaaaattgttattttcaatgagggcctatgaacagtgggttaactgctttgttcaggggcagaacaacagatttgtgctaggggatttgaacttgcaacctttgggttactagtccaatgctctaaccactaggctccgcTGCCAAGTCCTCAATCTTGCCTCAATCGACCCCTGATCTGTAGGATTGCCAGATTGTGAACAAGGTCCATCCACTCACCTGGGATGGAAAGACAGTGTTTTATATTCTGTGCCAACTATCTGTAACACTAGCCCCATTTATTACTGGTTCTAGCTTGCGTCCTTGTCCTGATCTTATCCACATTCTGAATGTCTACACCGGTCAAAAAATGCGCAATCaaaagacacattgtgatctgattgggATCTGATCATTCTGCCCACCTCTGGAGGTAGTCAGACACACATCATGTCTGGATATCTTACAGGTGTAGACAGATCTGGACAGAgaaaccatttaaatcatcattattCAACCATCTAAAATCATTGAAAAGTGGCACCAATATCCGATtacatcaatatgtgtcttacaataaatacatatttttttgaatgaataGCTGTGAAGCTATTTGCATAAAGGAAGTGCCAGGAAATCTGATCGCAATGCAGATGGATATCAGACACGTTTTAAGCACATTTCTGTGTAGATCCATTTCtggaaatgtgggcacaatcagaatgtagacaagatcaggacaaaggatccatattagcaccaggtataaatgGGATTATAGACACCATTTCATCTGGACTAATGGCCACAAATTCAGTGGGCTGTcaactttctcttctctctctctctcatgcctgGCCATTTCTGTTGTTGCCGTGAGATCTCTTGACAGGAGGAGAGATCACACATGGGAAAACTGTAACCGACCAGCATGTTGCAACAATTAATTGttcattattttttattaacaCCATTTTTTGTGATCCTCCTCTTTTCACCTTTGTTGTTTATCCCTCTGGGTTTCTCATGTGCATGGTTCCCCCTTTTTATTTgaaacgtttttttgttgttgtatatgATCGTTGTCATACGGTGGGTTGTGAAATGCTTTGTATTGGATTGCCTTAAATGAAAAtgaattaaaaaaacaaatgactaCTTTTATAAAAA

Function

GO: NA

KEGG:

id description
K24523 CPNE5_8_9; copine 5/8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU688019 lncRNA downstream 23239 38280490 ~ 38280791 (-) True G604058
TU688010 lncRNA downstream 33100 38270689 ~ 38270930 (-) True G604049
TU687878 lncRNA downstream 36166 38266849 ~ 38267864 (-) True LOC110527712
TU687923 lncRNA downstream 169732 38134066 ~ 38134298 (-) True G603962
TU687921 lncRNA downstream 171227 38132561 ~ 38132803 (-) True G603960
TU688472 lncRNA upstream 84624 38584293 ~ 38593820 (-) False G604484
TU688477 lncRNA upstream 84624 38584293 ~ 38588955 (-) False G604484
TU688487 lncRNA upstream 106788 38606457 ~ 38606722 (-) True G604491
TU688640 lncRNA upstream 197847 38697516 ~ 38697822 (-) True G604631
TU688687 lncRNA upstream 282089 38781758 ~ 38782013 (-) True G604677
XM_021609167.2 mRNA downstream 34503 38264371 ~ 38269527 (-) False LOC110527712
XM_021609168.2 mRNA downstream 34505 38264371 ~ 38269525 (-) False LOC110527712
XM_036983205.1 mRNA downstream 43708 38214031 ~ 38260322 (-) True LOC110528948
XM_036983203.1 mRNA downstream 43721 38214031 ~ 38260309 (-) False LOC110528948
XM_036983204.1 mRNA downstream 43924 38214031 ~ 38260106 (-) False LOC110528948
XM_036983210.1 mRNA upstream 32263 38531932 ~ 38659391 (-) False LOC110527715
XM_036983213.1 mRNA upstream 32263 38531932 ~ 38659391 (-) False LOC110527715
XM_036983208.1 mRNA upstream 32714 38532383 ~ 38659391 (-) False LOC110527715
XM_036983209.1 mRNA upstream 32714 38532383 ~ 38659391 (-) False LOC110527715
XM_036983211.1 mRNA upstream 32714 38532383 ~ 38659391 (-) True LOC110527715
TU684989 other downstream 2542760 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 3248802 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 3248897 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 3337244 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 3689155 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 89486 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 89748 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 91199 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 102661 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 563336 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile