RNA id: XM_036983208.1


Basic Information

Item Value
RNA id XM_036983208.1
length 5618
RNA type mRNA
GC content 0.54
exon number 35
gene id LOC110527715
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38531932 ~ 38659391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAATGTGAGACAGACAATAAATAGGCAGAGAAGGCTGTTAATGTGTGGTTTTGGATGAGCGCCGAAACGGTTTGTAGACTTCGCACATACACAACAGGATGTAGCAGCGGCGAAATAAATAAGAAAGGAGAAGAAAAGCGCGTGCGAAGATCGGAGGTGTAGATTGTGAGCGTGGACAGAAGCAGAAGCCGACGGTAGCAGGATTACCCACGGCAGGTTATGATGACAGCACCGCGGCCCGAGCTTCTAACCTGAAGTACCGCTCCATGCGCTTTTGTTTGACGCAGCACTGGATTTTTACGCACTAAACGGACTCTGACTGGCACAGTTCAGATACTTTTGTAACAGAGGGGAGCACTGAAAGAAAGAGGACAGGATGGCGAGCCAGAACGACTGCTGTGTGAAGGTCTCTTTGAGGATCCGTCCCCAGATGGCGAAGGAGAAGATTGAGGGCTGTCACGTGTGTACGCTGGTCACGCCCGGAGAGCCCCAGATGTTGCTGGGTAAAGACAAGGCCTTCACGTACGACTTTGTGTTCGACATCGACTCAGCCCAGCAGCAGATCTATGCTGCCTGCGTCCACAAACTCATCGAGGGCTGTTTCGACGGATACAACGCTACGGTGTTTGCCTATGGACAGacagGATCAGGGAAGACTCATACCATGGGGACAGGGTTTGACATGAACGTGCAGGAGAAGGACCAGGGTATCATCCCGCGGGCTGTTCGTCAGCTGTTCCTGGGCATCCAGGAGAGGAAGACACAGGCCCAGCAGCAGGGCACACACCCTCCAGAGTTTAAAGTCAGTGCACAGTTCCTAGAGcTGTACAATGAGGAGATCCTAGATCTGTTTGACGGAGCCAGAGACCCAGACTGTAAGAGCAGGAAGTCTAATATCAAGATCCATGAGGATGGCAGCGGCTCCATCTACACCACCGGAGTCACCTCACGACTTGTCAACTCAgaagaagagCTGTTACAGTGTCTGAAGCTGGGAGCGTTGTCTCGTACCACGGCCAGTACCCAGATGAACGCATCTAGTTCCAGATCTCACGCCATCTTCACCATCAACCTCTGTCAGATGAGAGTCTGTCAACAAACTGAggagaaTGGTGAGGTGAACGGAGGTGTAAATGGAGGTGTGATTGGGGAGGTGAACGGTGATGAAAATGGAGGTGTGATTGGGGAGGTGAACGGAGAGGTGAATGGTGTTGTCGGAGATGGAGGGTCAATTATCAAGCCTGAGTATGAGACTCTGATGGCCAAGTTTCACTTTGTGGACCTAGCTGGATCAGAGAGACTCAAACGCACCGGAGCAACGGGAGAACGGGCTCGGGAGGGCATATCCATCAACTGTGGACTGCTGGCTTTGGGGAATGTGATCAGTGCTCTGGGGGACCAGGCTAAGAAAGGAGGACATGTTCCCTACAGAGACTCTAAACTAACGCGCCTACTACAGGACTCACTGGGAGgaaacagtCGTACTTTGATGATCGCGTGTGTGAGTCCGTCGGATCGGGACTTCATGGAGACCCTGAACACACTGAAGTACGCCAACAGAGCCAGGAACATCAAGAACAAGGTGGTGGTGAACCAAGACAAGACCAGCCAACAGATGTCTGTCCTGAGGGCTGAGATTGCCAGGCTACAAATGGAACTTATGGAGTATAAAGCgGGTAAGCGTGTGGCAGGTGAGGACGGCTCGGAGGGCTTCAGTGATCTGTTCCAGGAGAACTCGATGttacagagagagaacgacaCGCTACGCATGCGAGTCAAAGCCATGCAGGAGACCATCGACCACCTCAACACACGGGTAACCACGCTCCTCGCCAACGAGGTCAGCACGCTGCTGGCCAAGTCGGGTGAGGGCAATGAGGAGATTGGTGCTCTGATACAGAACTATATCAGAGAGATCGAGGAGCTCAGatcaaAGCTCCTGGAGAGCGAGTCGATGAACGAGTGTCTTCGTCGCAGTGTAACCCGTCTCTCCTCCCGCTCCCCgttcaccacctcctcctctcatagCTCCACCCCAGGGCCACACCCCTTAGGctcctccccttccctttccATGGAGGCGGAGATGACGGACGTGATTCGTCGAGCCAAGACGGACATCGAGAGGctgaagaagaaggagaggagacagaggaggatgagcccagagaaagagaaagggttgAAGAAACGAGCGAAGCTTCATTCTCATGAGAACGGACATAATGGAGAAAACGGCCAGATGGACTCGGATGACAACTACACAGAGGACGTGATGTCACCTctgcaggaggaggagagcgggtgtgacgaggaagaggaggaggggagggacgAAGAggagtttgacagtgatgagagtCTGGTGGACTCCGACTCGGACTCTGATGAGAAAGCTAATTTCCAGGTGGATCTGGCAGACCTGACGAGTGAGATTGAGATCAAGCAGAAGTTGATAGATGAGCTGGAGAACAGTCAGAAGAGACTGCTGCAGCTCAAGCTACAGTATGAAGAGAAACTCATCCTGCTGCAGAACAAGATCAGAGACACACAGCTTGAGAGAGATAGAGTACTGCACAACCTCTtgtcTATGGAGAACTACACGGAGGAGAAGGCTAGCAGGATTAAATCCGAGTATGAGAAGAGGCTGAAGGAGATGAACAGAGACCTGCTGAAACTGCAGGCAGCACAGAAGGAACACACGAGGCTACTGAAGAACCAGGGACGCTATGAACAGGAACTAAAGAAACTGCAGCAGGAGGTCAACGAGATGAAGAAAGccaagGTGGCACTGATGAAGCAGATGAAGGAGGAGCagctgaggaggaggatgatggaggccaaGAGGAACAGAGAGATCGCTCAGCTCAAGAAGGAGCAGCGACGACaggaaTACCAGATTCGTTCGTTGGAGAGTCAGAAGCGTCAGCAGGAGCTGGTACTGAGGAGAAAGAGCCAGGAGGTGACAGCCTTACGACGTTTGGCTAAACCCATGTCTGGACGTATGGCTAGACGACTACAGCCCCTAGACTCCGGAGCAGAACTGTCTGCCAGCACCACCTCCTCTGAACCAGAGTCCAACCGgacctcAACCAAAGTGTCTAACATAGTGAGACAGTGGAACACCAAGATGAATGGCTAcctgggagagagcgaggggattACTACCAACGGGACACAGGTTGTTGGCAGTAGGACGCGTGTCCAGCAGCGCAAGGGTGTTCTCGTGGGCAGCAGTAGTTTCTCCAAGGCGGCCCGTCAGAAGTGGCAGACTCTAGAGAGGAGGATCCTGGACATCGTCATGCAGAGGATGACCATCACCAACGTCGAGGCCGACATGGACCGACTCATCAAGAAGCGAGAGGAGCTGTCTGTGCAGCAGGAGGCACTGTTGCGTAAAAGGCAGGTGCTTATGGCCGAGGGGGAGGGGCCTGACGGGGAGGACCGCCTAGTCCAGGAAATGAACGAGGACATTGAGGTTCTGAATGCAAACATAGACTACATCAACGACAGCCTATCAGACTGCCAGGCAACCATCGTTCAGATAGAGGAGACCAAGGATGAGCTGGACTCGGTGGACACCTCAGTGGTCATCAGCTCCTGCTCTCTGGCTGAGGCCCGACACCTCCTGGACCACTTCCTCAAGGCCTCCATTGACAAGGGTTTACAGGTGGCTCAAAAGGAGTCTCAGATCCGTCTGTTGGAGGGCCAgctgagacagacagatatgatTGGCTCTGCCCATAACCACATCATCCTGGACGCGCTGAGAGAAAAGGCTGAGTGTATCCCCGAGCTACAGGCACTCATACACAACGTACAGCAGGAGAATGGTTATGTCAGCACCGACGAGGAGCCTTCAGAGTTTAGCCAGGCCTCTGACGGCAGtgtgTCTCGGATGAAGTCCTCAGCTAGTCAGGATGACTGCAAGCTGAAGGTTCAGACTGAGCCCCGTCTGTCAGCCCAGATGAAAGCGGTATCGGCAGAGTACCTGGGTCCCATGTTAGACCCGTCCACTAAGAACATCACCAAGTCCCTGGCCTCCCTAACAGACATCCAGGAGAACGGCGGCTCAGGTGGCCTGAGCCTCACTCTCCCCATCTTTAGAGACAGGGTGTCCAGGACCATCAGCCTGCCTGTCCGGGGACACACCTTtCCTCGGCAGTCTCGGGGGGGTGACACCTCCCCTCTAACAAGGAGGAAGTCTTATGACCGAGGCCAGTCTTACAGAAATGCTGATGGGCAtactcccccatcctcccccccTCTCAGAACCAGAAACGACCGCAATGTATTTTCAAGGCTCACCAGCAACCAGAGCCAAGGCTCCGCACTGGACaaGTCGGATGACAGCGACTCCTCTCTCTCGGAGGTGCTCAGGGGTGTGATCACTCCCACGGGGGGAGTGAAGGGGGGACGGACGGCGCCCCTCCAGTGTTCAGCCATAGCAGAGGGACACTctaaacctgtcctctgtgtgGACGCTACAGATGAACTGCTCTTCACTGGATCCAAAGACCGGACGTGTAAGATGTGGAACCTGGTGACGGGACAGGAAATCGTCACGCTGAAAGGGCACCCCAATAACGTGGTCTCAGTCAAATACTGTTCCTCCTCCTGCCTCGTcttctctgtctccacctcctACATCAAGGTCTGGGACATACGAGACTCTGCCAAGTGTGTCCGCACCCTCACGTCTTCAGGCCAGGTGGTATCGGGGGATGCGTGTGTGGGCACCACCACCCGTACCATCACGGTGGCACAGGGTGAATACCAGATCAACCAGATAGCTCTCAACCCCTCTGGCTCTGTTCTCTATGCTGCTGCTGGTAACACTGTACGCACCTGGGACCTCAACAGGATGATGGCATTAGGGAAGCTGACAGGTCATATAGGCTCAGTGATGTGTCTCACTGTAGGTCAGTCTCTACTGGGCAAAGACCAGGTCATCACTGGCTCCAAGGACCACTATGTCAAGGTGTTTGACGTGGCAGAGGGCATGCTGGGTAATTTAGGCCCCGCCCACAACTTTGAGCCTCCGCACTATGACGGCATCGAGTGTCTGGCCATCCAGGGAGACGTTCTGTTCAGCGCATCACGAGACAACGGCATCAAGAAGTGGGACCTGGAGAACCAAGAACTCACACAGCAAATCCCCAACGCCCATAAGGACTGGGTGTGTGCTCTGGCATACGTTCCTGGGCGACCCATGTTGCTGAGTGCCTGTCGGGGAGGCATGCTGAAGGTGTGGAACGTTGATAACTTCACCCCCATAGGAGAGGTCAAGGGTCATGAGAGCCCCATCAATGCCATCTGCACCAACTCCCGGCACATCTTCACCGCTTCCAGTGACTGCAGGGTGAAGTTATGGAGTTATGTACCAGGTCTGACCCCGTGTCTACCTCGACGGGTTCTGGCTATCAAGGGTCGTGCCACAAGCCTCCCATGAGCCTTCACTCCGACTCACAACCCCGCTTCCGCTCTCCTCTGtGATATGACAGTGAAGATCTGGTCAGCAAAGGTGGGGAAGAAGAGGTGACGTTCGGTCGGAGCGTTATTGTGACATCATTATCTGCGGCCATCTTTACTGAGGGCCTtcacccctgacctctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU688019 lncRNA downstream 251592 38280490 ~ 38280791 (-) True G604058
TU688010 lncRNA downstream 261453 38270689 ~ 38270930 (-) True G604049
TU687878 lncRNA downstream 264519 38266849 ~ 38267864 (-) True LOC110527712
TU687923 lncRNA downstream 398085 38134066 ~ 38134298 (-) True G603962
TU687921 lncRNA downstream 399580 38132561 ~ 38132803 (-) True G603960
TU688640 lncRNA upstream 38125 38697516 ~ 38697822 (-) True G604631
TU688687 lncRNA upstream 122367 38781758 ~ 38782013 (-) True G604677
TU688688 lncRNA upstream 123231 38782622 ~ 38782880 (-) True G604678
TU688694 lncRNA upstream 130022 38789413 ~ 38789620 (-) True G604684
TU688716 lncRNA upstream 146833 38806224 ~ 38806443 (-) True G604706
XM_036983207.1 mRNA downstream 32714 38304030 ~ 38499669 (-) True LOC110527714
XM_036983206.1 mRNA downstream 32724 38304030 ~ 38499659 (-) False LOC110527714
XM_021609167.2 mRNA downstream 262856 38264371 ~ 38269527 (-) False LOC110527712
XM_021609168.2 mRNA downstream 262858 38264371 ~ 38269525 (-) False LOC110527712
XM_036983205.1 mRNA downstream 272061 38214031 ~ 38260322 (-) True LOC110528948
XM_021609173.2 mRNA upstream 43846 38703237 ~ 38738350 (-) False LOC110527716
XM_021609171.2 mRNA upstream 43846 38703237 ~ 38757485 (-) True LOC110527716
XM_021609175.2 mRNA upstream 111107 38770498 ~ 38793057 (-) True LOC110527718
XM_021609176.2 mRNA upstream 199477 38858868 ~ 38862874 (-) False LOC110527719
XM_021609177.2 mRNA upstream 203628 38863019 ~ 38866559 (-) True LOC110527720
TU684989 other downstream 2771113 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 3477155 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 3477250 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 3565597 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 3917508 34614492 ~ 34614875 (-) True G600721
TU689636 other upstream 403614 39063005 ~ 39068828 (-) True LOC110527723
TU690234 other upstream 1179500 39838891 ~ 39841331 (-) True G606135
TU690660 other upstream 1564164 40223555 ~ 40224167 (-) True LOC110527741
TU691182 other upstream 1969858 40629249 ~ 40629880 (-) True G606973
TU692184 other upstream 2497279 41156670 ~ 41348899 (-) False LOC110527764

Expression Profile