RNA id: XM_021609174.2


Basic Information

Item Value
RNA id XM_021609174.2
length 2010
RNA type mRNA
GC content 0.46
exon number 4
gene id lhfpl5a
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38690340 ~ 38704044 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTTACATTCAGTGTGTGAGAGATACTGTATGTCAGTAAGTGACGCCTTCAGCACCGGGAGCTGTCCATGGTTTTGAATTTCCGAGCAGCAGTGTTCATCAGGACAGACGAGGCAGAGTGGATACATACCTCTATACCTACGGAcgtctgagtgagtgagtgtagaaAAAAGGAACTAAACGGgtttttttagaaatattttttttccccctctctcgaCTTGGAAACCATAAAAAGTAATCATCTAGAAATAGTTCCTTCAACCGTCGCCATGCTCCCCGCGCAGGAAGCGGCTAAGATCTACCACACCAACTACGTGCGTAACGCGCGCGCCGTGGGTGTCTTGTGGACCATCTTTACCATCTGCTTCGCCATCTTGGTGATGGTGGTGTTCATACAGCCCTACTGGATCGGTGACAGCGTCAACACCCCGCAGGCGGGCTACTTTGGCCTGTTCCACTACTGTATCGGGAACGCGCTCACCGGTGAGCTCATCTGCAAAGGGAGCGCGCTGGACTTCGGCTCCATCCCATCCGGGGCCTTCAAGACAGCCATGTTCTTCGTTGGCATATCCATGCTGCTGGTGGTGGGCAGCATTGTTTGCTTCAGCCTCTTCTTCTTCTGTAATGCCGGCAGCGTCTACAAGATATGTGCATGGATGCAGCTGGCCTCCTCCACTTGCATGGTGATAGGCTGTATGATCTACCCTGACGGCTGGGACAGTGAGGAGGTGAAGAGGATGTgtggacagagaacagataagTACACCCTGGGTAACTGCACGGTGCGCTGGGCCTACATCCTGGCTATCATCAGCATCATGgactccctcatcctctccttcctAGCTTTCTCCCTGGGGAACAGGCAGGACCAGCTACTGCCAGACAACTTTCAGGTGGACGGGAAAGAAAAAGACaaagaggaAGCCTGAGCTCATTATCAACCACAGAAGACAGATGTACTACATACAACACGAAAGACGGACCTGtgaggtggtggtgttgtggaAATAAAGCCCAGCTAGTTAAAAGGCAATATCAACTCCACTTTAGTGCATCACTTTACAATAATACATGTACCTGGTAGAACGCTGATAAGTGATAATAAAATGTTGCATATTAATATACCCTGACCTTGCTTTACTTGAATATAGAATATACTGCACTGCCTCCTAACAAGTACAAGTCAGCCATTTTCAAAATCTAAATGTTTATTCAACTACAGAAAATGCTTAGTTTAGCAGTGAACAATTAAATGCAGAGAGGGAGGtcaggagagggggaggcagatgAGGAAGAAAGGCAATGAGAGGTCAGGGGAAGAGCGCATTGAGAACGAGGGCGGGAGGAGAGGGGCTTGTAGAAAAAGAGCAACCAATGGGATCGGGGGGAGGGCACCCTTCAAAGCATTATAACAGTGTCATCATTCTTTATTACAATCCACGATtatacatttctctctctttgatgCATTTAAAACAGTCCTACACTGCAAGAGGGGCAACGTCAGTATGAAAATAAGCTTTAAAAATGCAGCAAAAAAAACTAGCAAATGCATCTCAAGGCATCAATCGACCTCATAACGACTCATTCAAACATTTGCACCTTAGCAGAGTGTGTATTCCAAAAGGCatccgattccctatatagtgcattacttttgaccagagcctaaaTGGGCTCTAGTCATAAATGGGGCACAAAATacgtaatagggtgccatttgggacacaggcagaGCTTCCGCTCCTTCATAATATACACAGTTCAAACAGAAGCTCCAAACACAAGTTCAGAGAGACAAGGCCAACTCTTTGGTACAGATATGTACAAGATAGGGGTTCAGATATGGGTTGTGcctaaaatggcaccctgttccaaCTATATAAAGAAtgagtcattttttttttgtaaatctgCTCTGGAATCGAATACAGAATTCTGATAATTTTTCTGAAACGGGAAAATTCCTACGCTCTTGTATCACACCATCtagcaaaaaaaaa

Function

GO: NA

KEGG:

id description
K23893 LHFPL; LHFPL tetraspan subfamily member protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU688242 lncRNA upstream 88118 38598884 ~ 38602222 (+) True G604267
TU688230 lncRNA upstream 95518 38584474 ~ 38594822 (+) False G604258
TU688228 lncRNA upstream 95518 38589418 ~ 38594822 (+) True G604258
TU688153 lncRNA upstream 159893 38523559 ~ 38530447 (+) True G604191
TU688018 lncRNA upstream 409324 38280540 ~ 38281016 (+) True G604057
TU688567 lncRNA downstream 16648 38720692 ~ 38727601 (+) True G604567
TU688577 lncRNA downstream 52575 38756619 ~ 38761662 (+) True G604574
TU688616 lncRNA downstream 77575 38781619 ~ 38782102 (+) True G604608
TU688617 lncRNA downstream 78126 38782170 ~ 38782467 (+) True G604609
TU688626 lncRNA downstream 89352 38793396 ~ 38793697 (+) True G604618
XR_005052577.1 mRNA upstream 422994 38260379 ~ 38267346 (+) False LOC110527711
XR_005052576.1 mRNA upstream 422994 38260380 ~ 38267346 (+) False LOC110527711
XM_021609166.2 mRNA upstream 426814 38260392 ~ 38263526 (+) False LOC110527711
XM_021609163.2 mRNA upstream 520086 38162615 ~ 38170254 (+) True LOC110527709
XM_036984429.1 mRNA upstream 529442 38128380 ~ 38160898 (+) True LOC110527708
XM_021609189.2 mRNA downstream 487037 39191081 ~ 39201578 (+) True LOC110527727
XM_021609192.2 mRNA downstream 524657 39228701 ~ 39238479 (+) False LOC110527729
XM_021609193.2 mRNA downstream 524661 39228705 ~ 39240208 (+) True LOC110527729
XM_021609195.2 mRNA downstream 587612 39291656 ~ 39308642 (+) False LOC110527730
XM_021609194.2 mRNA downstream 587612 39291656 ~ 39310234 (+) False LOC110527730
TU688229 other upstream 99046 38584474 ~ 38591294 (+) False G604258
TU688169 other upstream 190678 38499031 ~ 38499662 (+) True G604207
TU686155 other upstream 1599584 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 2114268 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 3718935 34971128 ~ 34971405 (+) True G600531
TU690507 other downstream 1422490 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 1502525 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 1519131 40223175 ~ 40224171 (+) True G606464
TU690594 other downstream 1526841 40230885 ~ 40231225 (+) True G606469
TU690810 other downstream 1735056 40439100 ~ 40440632 (+) True LOC110527751

Expression Profile