RNA id: XM_021609173.2


Basic Information

Item Value
RNA id XM_021609173.2
length 4841
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110527716
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38703237 ~ 38757485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccgctctcttcctCGCTTTGTACTTTTCCCCTCTGTTTTCTGAACTCTGTTCATCTCCACGCTGATCCCATCTCCTCTTCACTCATCTCCTCATCCTGTCGTATTGTGGTGTATGGAGTGAGGATCTCCGGTCCTGCCTGCACCCatcctctctacacctccctccatGGGCATCCGAGCATCCTGCAGaccagacCCTGCGCCGCGGGGAGGTGCGTCCAAGCAGAATGACTCTCCTATCCCAGACCAGGATGAGGAGATACTGGGCTCTGATGACGAGGAGCAGGAGGATCCCAACGACTACTGTAGAGGAGGTTACCACCATGTGAAGATAGGAGACCTGTTCAATGGAAGATACCATGTGATCAGGAAGCTGGGCTGGGGACATTTCTCCACTGTATGGCTGGCCTGGGACATACAGGGGAAGCGTTTTGTGGCCATGAAGGTGGTGAAGAGTGCAGAGCACTACACTGAGACGGCCCTGGATGAGATCAAGCTGCTGAGATCGGTGAGGAACACGGACCAGAACGACCCCAGCAGAGAGAAGGTGGTTCAGCTACTAGACGACTTCAAGATCTCTGGCATGAACGGAAGTCATGTCTGTATGGTGTTTGAGGTACTGGGTCATCACTTGCTGAAGTGGATCATCAAGTCTaactaccagggccttcctctgccCTGTGTCAAAAGCATCATTCGACAGGTTCTCCAGGGGCTGGACTACCTCCACTCAAAGTGTAAGATCATCCACACGGACATCAAGCCAGAGAACATCTTGTTGACTGTTAACGAGCCCTACATTAGGAATATGGCTGCTGAAGCTACGGAGTGGCAGAGGACAGGAGCTCCACCCCCCTCTGGATCTGCAGTGAGCACAGCCCCTGCGCCCAAACCAACGGTGAAGATGTCaaagaacaagaagaagaagatgaagaagaaacAGCGGAAGCAGGCAGAGATGTTAGAGAAGAGGATTCAGGAGATGGAGGGAGCGccggagggaggagaggaggagggggaagaggagactgAAGGGGTAACCACAGACGCTCCCCCGCCCACCTCCGACACGCTACAGGACATTGCTAATGGTGTCACAGCAGACCCAGCTCCAGATAAAACGGAGGAGGAGAGCAGGATGGAGGTGAACTGCAATGGCCACGCCCTCTCGGAGAGCCATGAGGTACAGAGGACCAgcgaagaagaagaggaggaccaacaGAACGCCAACAAACTTGACGCCGTAGCCCCCAACAACGCCAGTATACAGGGACGGGACTCGCCGGCCAACGCAGTTTACCGAGAATGCAACGGCAGAGTGCACGGCGACTCCGGAACACACGATAAagaagggagaggaaaggagggcaaGACGGAGGAGTGTAAACGACCAGAgaaggatggggaagagagaaaagACGAGGAGATGGAAACTGATGTGGTGCCTGgaagagaggatgaagaggaggagggcgaGAGGAACGATAAAATAGCAGCAGGCAGTCTGTTGGTCAACCCTCTGGAACCTCTCAATGCAGACAAGATCCAGATCAAAATAGCTGACCTGGGGAATGCCTGCTGGGTGcaCAAGCACTTTACAGACGACATCCAAACTCGTCAGTACCGTTCTCTGGAGGTGCTGATGGGAGCCGGCTATGGGACGCCTGCTGATATCTGGAGCACTGCCGCAATGGCTTTTGAGCTGGCTACAGGAGACTACCTGTTTGAGCCTCACTCTGGGGAGGACTACTCTAGAGATGAAGATCACATAGCTTTGATCATTGAGTTGTTGGGTAAAGTTCCTAAGAAGCTGATCCTGGCCGGAAAATACTCCAAGGAGTTCTTCACCAAGAAAGGTGACCTGAGGCACATTACCAAGCTGAAGCCATGGGGTCTGTTGGAGGTGCTGGTGGAGAAGTATGAGTGGTCTAAAGAGGAGGCAGCTACCTTCGCTAGCTTCCTTTTCCCAATGTTGGACCTGGTACCAGAGAAGAGAGCTACGGCTGCAGAGTGCCTCCGACACGCATGGATCGCCCCCTAGAGGAGCCACAGCGCTACTACAGTCAACAAGCAGCTCATACaggacacacatgcatacatacatgaaCATAtgtacatacccacacacacacacacaaacatgcatacgCACTCAcaagcattcacacacacacatatagatacACACTAAGAGGAAGCCGTTGCCAGCACAATGCCTGCATTGCCTCCCTAGTGGCTCAACACACGCACAAACCACGCTAGACTGGCTACTGAAGCCCTACTGGTGGCCTTCATAGAAAACACTGGTTCCAGATAAATAAACACAAGGAAGCCCGATCCAGCAGCACTATATCtatttatgtctctctcttttactTTGTTTCTTTTTGGTACTGACTGGATATGACTTGAGTATCTGATCTCTTTTTCTTTATTTACTCTTGTTTTTCTCTGTGCCAATGATGACACCTCTAACAAGTTTCATTCAGAGTTTCTCTTTTGTTTTTGTTCCTTTAACAGATGTGCATGTTCAGAGTTAAGATCAAACCTCACAGACCTCCACTGGACAATTTCCAGACCAATCCAATCATATCTACAGAACACCCACTGTACCACTATACTAGCACATCCGAATGGTTGttattttatatacagtgttgaTAGAGGTTAGTTTGAGTCTTTTCCTTCAATAACAAAGCATATTTACAATGTGTGTAGGATTGTGGGGAAGAGTAGCTACCTAGAAAGTAATCGAAGGATTCTCCATGAAGTATTCCTGAACTGGAATTGACTGAATGCAATGGAACTTGTTCTGTTTCTCTTCTATGACATCATCCCTGTCCTATCCTTTCTTGTCTCATTCCAAGCAGCCGTTTTGGAATGGCACTTACCACAGTGTGGAGATGGTACCATCATACTCTGTCCCGCGTTTGATTTACTACCTTCTGTTACCTGCATTGATCCACAGACCATGACTAGACCAATGCTACTGAATAGCCATGTTTCAAACTAGCCAGCAGATTCTGACCTTACCGTTACGTTTGTTTACACTAAGCTGCACTGGGGTCGGAACGCAATCATGGTTAGATTTTGACACCGTGGAGCCGGCGCACTGTCGAAAACGTTCCTCAATGCAGCGATGGGATGTGCCACTGTACCCCAAATTGTACTTCAATTCAAACTTCCCTTTTCCTTCTCATCCGAGCTAGCAGTAGGCACAGCAGCCATTATGGAATGGCACATCGCGTTGAACAACAGaggctgattggctgacactgcCATTCCAAAATGGTGGCGGTGGCTATTGCTCGCTAGCATGAGGATGAAAGGGCATTTTTCTAGTAAAACtagcagtatttcaatcttctTGATGTATCAGTTTGGATATAGGTAAACTTTTCAGTACAGTGTTATATCCAAGGATGTATATCAaacctggattgctgatgctatgtattggccaatgagtgGCTTTGAAGCAACCGGTCGaccatattggcactccctagAAGAGGCAGTCCTTCATAGGACTTAATGGAATTccacagtatttcaattaaattaaaGGACAAAATGAcctgtttttaaatatttttgtagtggggacagtaacaatttaaaagtatgcattaaggtgtctaaCAGAATAAACTTGGTAAAAACAGACAGTTAATGTAGACAGtcaatgtagacattaataaatgcatttgtaTAGCTTCCCAAACATTTTTTTACAATGGTGGAGTGCCAAGATGACGGCGTGGTGGCTTCAAAACAGTGACCCTGTAAgtcatctagtgtgtgtgtgtatataaatcaTTGGGCACATCCCATCCCTGCATTGAGAAGTTTTCCAGCCCATATCTCGCTGCGGCTCTGTGGTGTATTAATCTAACCATGATTGTGTTCTgaccccagtgcagctcagtgtaaacaagcGTAACATAGGGTCAGAATCTGCTGGCTAGTTTCATACCTCTCCTGTGGTGTTTAAGGTTCTAGATAAGGTTTGCCTCTGAGaaaataatgttgtttttttttgctaGATGGTGTGATACAAGAGCGTAGGAATTTTCCCGTTTCAGAAAAATTATCAGAATTCTGTATTCGATTCCAGAGcagatttacaaaaaaaaaatgactcaTTCTTTATATAGttggaacagggtgccattttaggCACAACCCATATCTGAACCCCTATCTTGTACATATCTGTACCAAAGAGTTGGCCTTGTCTCTCTGAACTTGTGTTTGGAGCTTCTGTTTGAACTGTGTATATTATGAAGGAGCGGAAGCtctgcctgtgtcccaaatggcaccctattacgtATTTTGTGCCCCATTTATGACTAGAGCCCAtttaggctctggtcaaaagtaatgcactatatagggaatcggatGCCTTTTGGAATACACACTCTGCTAAGGTGCAAATGTTTGAATGAGTCGTTATGAGGTCGATTGATGCCTTGAGATGCATTTGCTAGTTTTTTTTGCTGCATTTTTAAAGCTTATTTTCATACTGACGTTGCCCCTCTTGCAGTGTAGGACTGTTTTAAATGcatcaaagagagagaaatgtataATCGTGGATTGTAATAAAGAATGATGACACTGTTATAATGCTTTGAAGGGTGCCCTCCCCCCGATCCCATTGGTTGCTCTTTTTCTACAAGCCCCTCTCCTCCCGCCCTCGTTCTCAATGCGCTCTTCCCCTGACCTCTCATTGCCTTTCTTCCTcatctgcctccccctctcctgaCCTCCCTCTCTGCATTTAATTGTTCACTGCTAAACTAAGCATTTTCTGTAGTTGAATAAACATTTAGATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU688640 lncRNA downstream 5415 38697516 ~ 38697822 (-) True G604631
TU688487 lncRNA downstream 96515 38606457 ~ 38606722 (-) True G604491
TU688472 lncRNA downstream 109417 38584293 ~ 38593820 (-) False G604484
TU688477 lncRNA downstream 114282 38584293 ~ 38588955 (-) False G604484
TU688019 lncRNA downstream 422446 38280490 ~ 38280791 (-) True G604058
TU688687 lncRNA upstream 43408 38781758 ~ 38782013 (-) True G604677
TU688688 lncRNA upstream 44272 38782622 ~ 38782880 (-) True G604678
TU688694 lncRNA upstream 51063 38789413 ~ 38789620 (-) True G604684
TU688716 lncRNA upstream 67874 38806224 ~ 38806443 (-) True G604706
TU688718 lncRNA upstream 68147 38806497 ~ 38806712 (-) True G604708
XM_036983210.1 mRNA downstream 43846 38531932 ~ 38659391 (-) False LOC110527715
XM_036983213.1 mRNA downstream 43846 38531932 ~ 38659391 (-) False LOC110527715
XM_036983208.1 mRNA downstream 43846 38532383 ~ 38659391 (-) False LOC110527715
XM_036983209.1 mRNA downstream 43846 38532383 ~ 38659391 (-) False LOC110527715
XM_036983211.1 mRNA downstream 43846 38532383 ~ 38659391 (-) True LOC110527715
XM_021609175.2 mRNA upstream 32148 38770498 ~ 38793057 (-) True LOC110527718
XM_021609176.2 mRNA upstream 120518 38858868 ~ 38862874 (-) False LOC110527719
XM_021609177.2 mRNA upstream 124669 38863019 ~ 38866559 (-) True LOC110527720
XM_036983214.1 mRNA upstream 153464 38891814 ~ 38916817 (-) False LOC110527721
XM_036983215.1 mRNA upstream 153464 38891814 ~ 38916817 (-) False LOC110527721
TU688474 other downstream 63837 38602330 ~ 38639400 (-) True G604484
TU688481 other downstream 105718 38589155 ~ 38597519 (-) False G604485
TU688480 other downstream 105718 38590868 ~ 38597519 (-) True G604485
TU688470 other downstream 108421 38589417 ~ 38594816 (-) False G604484
TU684989 other downstream 2941967 35760699 ~ 35761270 (-) True G601245
TU689636 other upstream 324655 39063005 ~ 39068828 (-) True LOC110527723
TU690234 other upstream 1100541 39838891 ~ 39841331 (-) True G606135
TU690660 other upstream 1485205 40223555 ~ 40224167 (-) True LOC110527741
TU691182 other upstream 1890899 40629249 ~ 40629880 (-) True G606973
TU692184 other upstream 2418320 41156670 ~ 41348899 (-) False LOC110527764

Expression Profile