RNA id: XM_021609177.2


Basic Information

Item Value
RNA id XM_021609177.2
length 3092
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110527720
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38863019 ~ 38866559 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTAGCtcttgtaaaaataaaaataaactcgcAGCATAAGGAGTTGACTGTATCGTGTACTTATACACTGGCATTTCGTTTAGCTAAATCTTGAATGTATTCCATTGATGACAATAATACTCATAGGCTATGAGCTGAATATATTTTGGCCCCATTAGATTTAGGGCCTCGCGTTTTCCTATTATTACGGTAACAGCGGGCATTCCTTGTCACGTGATCAACGAGAGCATCTTTTTTGGTCCATTTTGGATGATAGCTGAGTCCTTGTAGCTAACCACGACCCGAAAATGACAAAACTGCAGTTTTTAAACGTATTTTTGACCGAGCGGCTTATGCTCGCTGCCCAGGAGATCTACAAATCTGTCGAAGACACGATTTTGGAATACCAAGAGGAGATTGCGCtcagggagagggagaacgaCCATCTGAGACGCAGACTCCGAGACGCTGGGATTGAAATATGGCCAGACCGTCAGTCTATGGcactattggaggaggaggatggcgaGCATCCTCGCCGGGAGTGGAGCCCCAGCATGGGCCATGAGGAGCGAGTCCCCATCCTGATCAAGGAGAAACGGGAGCTCAGGTCCAGCCAGGGGGACGAGCAACTCCGGGGCCACGGCTCCTGCAGCACCCCAGAGTCCATCTTCACTCCTCCCCGCGTCACCAACGAATACCCCCAGGACCCTCCCCACTCCTCTAACCTGCCCCAGAACCCGTCGGTGGAGAACAGAGAGCGGGACCCTGGTCCCAGAAGCTCATCCAGACACGTCAAGTCAGAAGTGACCCACAGAGGCTCCTCATCATCTTCGTCCAACAGCGTCCCGCAGCCCCTCGCCACAGTCAACCCCAACTGCTCCAACGAGAACAACATTGACATCATTGGAGTGGAGAACGGAGGACAGATGTTGGTGTCTGGGTCTAAAGGACGAGCTGGTGGGAGCAGAGGTCAGGCCTCCCATTTAGGTGACCAGGGCAGTAACGCGGCCGCAGAGTGTGGAAAATCCCCCCTCCAGGTGCACGTGTCATCGTTCTGCTGCAAGGTGTGTGGGGAGGCATTCAGCCACGTTGGACACCTACATGTCCATGTCCAGGTGCACACCCGGGAGAAGCCGTACCGCTGCGGGGTGTGTGGGAAGTGTTGCAGCTCCTCCGGCAGGCTCCAGGAGCACGCCAGGagtcacactggagagaagccgtTCCGCTGCCAGATCTGTGGGAAGGGTTTCACCCAGATGGCCCATTTGAAGGTCCACATGCGGAtccacacgggagagaaaccATACAGCTGCCCAGTGTGTGGAAAGTGCTTCAGCCGCTCCGACAAAATCAAACGTCATCTCCAGACCCACAGCCGTGAGGGCACTTACTTCTCAGGGCAGTAAGATGAGGGAGACCACCGGTGGTTGTGGGTGGTAATGAGCGACTGAGTctgtatgaatgaatgaatgaatgaattactGATTATGGGACATTTTTTAAAAGCTAAAATTGCTGCCATTAAGACGGCTTgttatttttctctttctctcaaagaGCTAGGGATTCTGTGACTTTCTTAGAATGTTTTATCTCCTAGTTAAACACTTCTCTCCATGCCATAGTTTCTCTCTCATGCAGTAGATTTGTATAGTCGATTTAGTATGTGTCCATTTACTTTTTGTACTTGTCACTGAATGGGATAATAGGGAATCTTTAAACACCAAATTGAACGACTTAGTAGCTAGTCTTTCTGAATGATTTAGTCTTTACTTTTAGTAATGAAATTGGTAGCATGATGATAATGAAGTCTTCCACTATGCGCCTTGAAACGGAGATGCGTTCAGGCTTGCAACAATAAGCAGCATTCCAAAACGTGGTGGTCTTGCCCCAGACGATTTGCACAGGGCCAATTTACGCAtttctaaaatacattttattttattttttctcttCATTAATTTTTAAAAAGTATATCACAGCTTCTTCTAAAACCCACAAATCTTATTTCCTCAGTCAGCTGGCTGAAGTACATaagatgtttttatttgtaattctAATTAACAATGGCTAACCGTATGGGCATTGACTATAAACTGTTGTCCATTCCTTGAGTTTACAAATATGGATATAAGTACACATGTTCACCATTTGTTAGttagggttgggtaggttaggCAATAGCCCTGCCTGCTCGATTCAAGGTTTCTGTACAGTCACCTAAAGCCTCCCTGATACAACTGATGCTAAAGGACCATTTGCCTCTCTCGTCATCATTGCAGAACTGTGTACTGCCACCTGAATTTCAGTCAACTAACTTATCTTACAATTAAAAACATACTTATCAGTGAGGATTCAATGCAAAGACTGCTATTTTGCAAGATATGTTGCCTTGATAAGGATTGTTTGCTAATTCTGTATATGACCACTATCTATCCCCCACCTCTGATGCATATAGTGTGTCCTCTCTATGACCCGCACTACAGAATTTGACCAACACGGTGCAGAGACCAACAGATTCCCCAGCTGAGCCATACAGTATTACCCTGTATCTGAGCTGCTTGTTCCTGATTGTTGGCCCTGAGCTCAGcactgcacatactgtatattcactATAGTAAAGATCTGTTCTTGATGGCCAGTTTAAGTGTAACATACGTTTTGTTACAGATAGATCAAGCCTACTCCTGGAATCAAAAGCACTTTAGTTTATATTGCAAGTGCTTGTAATCTAGGGGTAGACTTAATGCAAGTCTCTACCTTTTTAGAAGTTTTTATCAGAACTTGAGCAGTGCCTAGCTGAGAACGAGGCTCATGAACAAGCAGTAGGCCTATGGCCCGGACCAGAAACAAACCATTGCCCAATCCCCTAGGCAAGTGTCTTGGGCAATAGGTGCTTGGGGTTGTTACTAGTAGACAGGGTCTTTATCTCCTCTCAGGACTGAGGCTACTACAGTAGGCCCTCTAATTTAACCAGcattcctccccttctctcccacaCAGTTTATTCTGGGACACCGctgctcccacacacacacacacacacacaactgtacaGTGTTGTATCATTATGTAATAAatgtaattttttaaataaagtagtCTGAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU689486 lncRNA downstream 2233 38831707 ~ 38860786 (-) True LOC110527719
TU688718 lncRNA downstream 56307 38806497 ~ 38806712 (-) True G604708
TU688716 lncRNA downstream 56576 38806224 ~ 38806443 (-) True G604706
TU688694 lncRNA downstream 73399 38789413 ~ 38789620 (-) True G604684
TU688688 lncRNA downstream 80139 38782622 ~ 38782880 (-) True G604678
TU689484 lncRNA upstream 21650 38888209 ~ 38891559 (-) True G605414
TU689524 lncRNA upstream 56665 38923224 ~ 38923464 (-) True G605454
TU689530 lncRNA upstream 62863 38929422 ~ 38929710 (-) True G605460
TU689531 lncRNA upstream 64188 38930747 ~ 38931016 (-) True G605461
TU689534 lncRNA upstream 111279 38977838 ~ 39014632 (-) False LOC110527722
XM_021609176.2 mRNA downstream 145 38858868 ~ 38862874 (-) False LOC110527719
XM_021609175.2 mRNA downstream 69962 38770498 ~ 38793057 (-) True LOC110527718
XM_021609171.2 mRNA downstream 105534 38703237 ~ 38757485 (-) True LOC110527716
XM_021609173.2 mRNA downstream 124669 38703237 ~ 38738350 (-) False LOC110527716
XM_036983209.1 mRNA downstream 203628 38532383 ~ 38659391 (-) False LOC110527715
XM_036983214.1 mRNA upstream 25255 38891814 ~ 38916817 (-) False LOC110527721
XM_036983215.1 mRNA upstream 25255 38891814 ~ 38916817 (-) False LOC110527721
XM_021609180.2 mRNA upstream 27210 38893769 ~ 38916821 (-) True LOC110527721
XM_021609184.2 mRNA upstream 67242 38933801 ~ 38958580 (-) False LOC110527722
XM_021609181.2 mRNA upstream 67242 38933801 ~ 38963581 (-) False LOC110527722
TU688474 other downstream 223619 38602330 ~ 38639400 (-) True G604484
TU688481 other downstream 265500 38589155 ~ 38597519 (-) False G604485
TU688480 other downstream 265500 38590868 ~ 38597519 (-) True G604485
TU688470 other downstream 268203 38589417 ~ 38594816 (-) False G604484
TU684989 other downstream 3101749 35760699 ~ 35761270 (-) True G601245
TU689636 other upstream 196446 39063005 ~ 39068828 (-) True LOC110527723
TU690234 other upstream 972332 39838891 ~ 39841331 (-) True G606135
TU690660 other upstream 1356996 40223555 ~ 40224167 (-) True LOC110527741
TU691182 other upstream 1762690 40629249 ~ 40629880 (-) True G606973
TU692184 other upstream 2290111 41156670 ~ 41348899 (-) False LOC110527764

Expression Profile