RNA id: XM_036983215.1


Basic Information

Item Value
RNA id XM_036983215.1
length 5554
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110527721
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38891814 ~ 38916821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCCATTATGCGAATCCCCGCGGGTAACTTTGTCGTTGTTCCAAATAATTAGCCAAGCAAGGAAAATTGGCAACGTACGCCTCTTAGCCCTCGCTTTGATCCagtttgcgagtgtacaattatgttcactccggCTCTGAAACGCCCCATATTTCAATTCGTGACAATTGTACTAAGAAACGTCCGTCAATTTAAAACCAACATTAATATGGCGAAGTCAACATAGAAGTGTATATAAAAACGAatgtaaataagttagaaatGGTGCTACTAATGATCATGACGGCTCAAATACGTATCATAAAAGTAATGATGTTTCTGTTTGGTAAGCTTTTGGAAACGTTAACTTGCGCACATAACTTTTCCTGACAACACACTTATCATTTTCGATTTACCTGATATGGTAGGATGGCTAACATTCGATGTCTGCGGATGCGCTGTCTTCAAGCCAAGATATGAAAggcaatcataattgactgtagccaTATAAGGCACACAACAGTTTCATGATGACTCAAAACACAACCGTGGGATGAACGAGTGACAACTTTCCGGATTAGCGGACCGTttaaaattaattaattattccCTCGTCCTGCAAGTGTCAACAcgtcagaagtgtccacttaatttgaggggaGAGGGTAACTATTTTAAGAGTTTGAAACGCAGCCCTCGATTGAGAATCCAAGCGTCGAATACGTACGTCagtgaaaaatatttttttgagtGTCTGCGCTCAGAGTGTACAGGAAACCAACACTCCGCCGATTTACAAATAAATATAGCTACGTTTTGGTTACGTTTGTTGACAAATTGTTTATCTCAGATGGAGAGCCACAGTGGTGACAACATCCCTGCATCGAAATGCAGCTCAGTGAAATATTACACAACGTTACCCTCCGAGACTACACCAACTGAAGATGGCGAGCATTCTTCCGAGCAAGCTGGTGGTACGGAGACGAGACCGAGAAGTGGAACTTCGACGCAATATATTCCAAAAGCGGGGGACCACTTACACTTTCAGATACCGAGAAAGAACAAAGAAAAGAGAGCGTTGTTCCAGTATGTGTCCTCAGAGTCCAGGGAGTTTGAGGACATCTTGACTATTCTGTCTTCCAGCTACATAGAAGCCAGCTCCAACGGGACGTTCACATACACCAAGCTAAGAATCGTCCACAACAAACTGCTGGAGAAGAATTTtgtagagaaaaggagggagcTGAAGCTGGATGGGAGGACGGAGAAGGAGCTGGAGGAGACCCACTGTTTCCTGACTGCTGACTCCACCATGCTACCATGGATCTGTGAGAATGGACTTCTTGTGGGGCACAGCTGGATCACCGCTCTGGGAAATCCAGCTAAGGGTGTTTATTTGTCTAAATACTCAGACTTACTGCAGATCAATCCTTTTAACCCTGGAGTCATGGGAGAGATCATCATATTCAAGGTTATCAAGggTAAAGTAAAGAGCATCTATGATAACATGTCTAAGAACCTTTTGGATCCCACACTCAAGTTTGACAGCCATTTATCGAAGAATGCCAGCATAGTCACATCTCTCACCTCCTATAGAGCCTATGAGCTCACTCAGcaaTACTTCTATGAGTATGACTTTGATGAGCTGAAGGCTCGGCCGAGGCATGTGTGCCCCTATGCAGTGGTCTCTTTCCAGTTCAAAGGCAAAGATGCTCCGTTACAAGCCAAGCCCATGGCTCCCCTAAGGTCAAACAGCCAAACAGGAAGTAAAGGCAGGAGTAAATACACAGTGTGGAGTGGAGAGCTTGTGAATGAGGGTAGAGTAGTGTCCCAGGTCTCCTtctgctccttctctccccccttcctgCCTTTCAAACTGCCAGAGAAGCTGGAGCTGGGTCTGGTGATGAGTATGGACCAGGTAACTCAGATGATCCCCTCGGCTCTGTTCTCCTGGAACCTGTACGCAGGCAGCCACCAAGtGTTGAAGAGTGGGACACACTGCAGTCTGCTGGAGGTGGTGGATAAGAGCAAGTCAGGAGACTGTCTGGCAGCACTGCTTCAAGGCATGGAGACACAGCGACTGGTTCTTGTCCACATGTTGGCTGACAAAGGATTCCTGTTCCTCCTGTCTTCAGTTCAGATGGCCACTCCAACTGaaaGAAGAGATGGGTTGAAAAAATGCCTTCGAGCGTTATTTGTTTTTCAGGAGTCCAGGGACGTGGCAAAATACAGTTCAAAGTGTCCAACTACGCAGGAGCCTTTACAGACGTCCTCCCGTGACCCCGCCATGCCCCAGCTGAACAGCTTTGTCCCAGCCCTGCATCACGCCCTGGTCAAGGTGCGCTGCAACCCGCCCGCTGACCTCTCGGCCGGGGTCGAGCGCCAGGCCAGGGACTACCTCAGTGGACTCCACCATGGAAAGCGCCGCCACATCCCCATGACTGAATATGACACCAAGCTGGATGACCGGGGGAAGCTGTTCCCGGCTCCCAAACACCACAAACTCAACACGGAGGGCTACCTGCGCTCCTACATCTACAACCCCAACCTCTACACCATGCCTGTTTTCCAAGCCAAGGAGATGGTAGAGAGTTACTGCACTGTGCCCGATGACAACAGCCCTGTAATGGGCTGGGAGGGCAGTGGAGCCAAGTCAGTGGTAGGGTCAGAGGTAAATCCTTATGGTGCCACTGCTGCCCAGTCCCCGGGGGTCCAGgtcaaccactctctctctcagtttcccACTGACGCCAAACCTCAGAAGTTGAAGGAGCTGATTAACCTGATACTGTGTTGGAGGAACATAGAGGGGGACGTCCGGAAGAAGGGAGTGCCGCAGGGAGGACGAAAGCAGGGGGCAGGTGGGTTGGACCCCCGAGGACTGAAGAGGAAGACTGCAGAGAGGACTCTGAACTACCGGAAGAAGGCCTCACAGGAAAGAGGCAGAAGGGATAGGAGAACAGCAGCTGCTGAAAAGGGCCAGAGCCCTTCTTATCTGTCCTCTGTGATGCTGCAGAGTGTTGGTCTGAGAGATGTGGACCTGAGGAGAGACCGCTCAGAGGCTGCTTTCAAGTTgtctgaggggagaggaggaggaggatggtcaAGAAAGGGGACACAGCAGACTAAAGCTCTGCTGTTTGATAGGATGATCAAGCTGGGCCTGCCGCCCAATCAGGACATTGACCTGAGGAAACGACATTCTGGGGGCCTGCAGGTCAAGGCTGACTTCTTGGAGACAGCAGGGAGCACGAACAGTCTGGAGGGCTTCAGCCCCAGTTCCAATGGTGAAATGCCCAGAAGATCACAGTCCCAATATCAGGGGGAAGAACAGATGCCATGGGTCCTCATCCCCATCACAGGGCTGAAGTCAAACAAGTACTGCCTGagccagaaggacaaccttcAGGACCCACGCTTTGTTCCCCAGATCCCTATGGCAAACAGAAGCTACCCCCCCTGTGTCCCGGAACGACGGGAAAGAAGCATCAACTCTACACTAGAGGAGCTCCCACAGCATAGCCTCAGTACTTCCCTAGAGGTGTCAGAAGAGCCTAGCCCCTACTCCAGTCCCTGCCCAAGCGCCTGCTCTTGCTCCAGTCCCATGGTGGGTGAGCAGCAATTAGCTGAAACCCCCTGTGACCCCACAGAAATAAGCGGCAACCATAAGACGAGCACAGACAAGAAGACGAGCACAAACCAGAGCTTCTTTCAAATCCCTGGTGCTCCAGCGAGCACCAGGCTACTAGACAAGTGCCGCAGCCCCTCACCTGAGCCAAAGCCAAATGGAGAACCTAGCCCTGTGGAGGCTGGGCAGGAACAGGTTGAAGGCAGCACAGGAAAAGTTATATCTGGCGTGGTTGCTGAAGATCCAACCACAATGGATGTTGGacaagaagagggggaggaggtagaggaggaagaaaAAGAGTTGGAGGAGGACGATGTGATTGAAGTGGTAGATGAAGAGGTGGAGACGGTTATAAAGCAGACAGAAGAGGTGTCACCACCCTCTCTTGACCTCAGTTCTCCTGAGCAGATTCCCGTCCAAAATCCTCCCCCCATCCAGAACACTCCTCCCGTCCAGAGGCCCGTGCTGAGCAGAGTGAACTGTGTCCTGGACCAGCAGTTCAGCGACTTCTCTACAGAGATGCAGATCCTCCTGCTCAGAGAGAGTGTCCACTACAGCTCCCCGCTGATCCCTAGCCAGAGTCCTCCAGGCCATCCCCCCATCCTGCCCTTCTCTGAGTATGTCTCCTTCTACAACACCTCCCCGCCTATGCAGGACTACGTCAGCTCCCTGAGAGACCGCATGGGCACCGTCATAGACACACAGGAGCAATGGATTCCTAGCATGGTGGCCACTGACTCTCCCCTGGTATTTTCTAACaataaccaccaccatgctagCCACGTTCATAGAACTACATACAACTGGTACCCTTCTTCTCGTGGCCCTGTTTCTCACTCTGTCCCTGTCTGCCCCTGGTCGTGCTAGTTTAGACTCTTACAGTTCTCTACCTGTGTCTCATTCTGTCCCCAACTGCcactctcctgcctctccttctggCCCCGGCCTTAACCTTGCTAGTTCATCCACTTACAGTTCTTTATCAGTTTCTCAGTTTCCCTCAGCTGTGTCTCAGtttaatagtaataataacaatcATGTTATTATTCGCTCTTCATCCTTCCCCGGTCCTGGCGCTGCCTCTCCTTTTACCCCTCCCCTCTACAACAACCCAGCCCAGACAGAGCTGCCTCTATCTCAGCTGCACTCTAGTCTAGCgcccctccccatccaaccactGGCACTGGGCAACCAGTGGATAACAAGAGCGCAAACAACAGAGAACCCGGACTCAGACTGCTGAGAGCAACTGGGAACGTGCAAGCCAAGTGCTATGTCAACCACGACAAAGAACACTGACTTAGATGCTCGAGGGCTACGGGGAAAGTGTAAGGCACAAACGAGTGCAACGTTTCAATCAAAAGACAATGTCATAAATGTTGATCCTCCGGTTCCAGAAGCCACCATGGTGGCTCCACATCATCTCACTCAGATGATTGAGAGTTCTTCAGGGGTGGGAGGGCCTTTCCCAAGCTCATCCACCTGCACCCATCAGTAGTCTGATTAGCCAGCTGAAACCTGAGCTGTTCAGTAACCTGGTGAAAATTATAAAAGATGTCCAGAAGAACTCTGTCCAGTTCTACATCCACCATATCAAGGAGTACCTCCAGAGATTGGGGAACATAGAATAGTCCTGAGAGTTTCTTGGAAAAAGAGAACCATTTGGAAAAGTATGGTTCTCATGCAGAACAAGGAAATCACAGCTCACGTTCGTAAGGTACTTGAAAACAATCAGTCATTCCACGAAATGAGTACCTTTtgtgtccctttgatattttaagtagaaattgtgcaccgcTAATGGATTTTAAAAGCCTTTTAAATTATGAAGTGCCCttaattcaatacatttttgaatgaAAAGActtctactttgaagaatctcaaatataaaatattttgatttgtttaacacatgattccatgtgttatttcatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU689484 lncRNA downstream 255 38888209 ~ 38891559 (-) True G605414
TU689486 lncRNA downstream 31028 38831707 ~ 38860786 (-) True LOC110527719
TU688718 lncRNA downstream 85102 38806497 ~ 38806712 (-) True G604708
TU688716 lncRNA downstream 85371 38806224 ~ 38806443 (-) True G604706
TU688694 lncRNA downstream 102194 38789413 ~ 38789620 (-) True G604684
TU689524 lncRNA upstream 6407 38923224 ~ 38923464 (-) True G605454
TU689530 lncRNA upstream 12605 38929422 ~ 38929710 (-) True G605460
TU689531 lncRNA upstream 13930 38930747 ~ 38931016 (-) True G605461
TU689534 lncRNA upstream 61021 38977838 ~ 39014632 (-) False LOC110527722
TU689536 lncRNA upstream 104453 39021270 ~ 39055056 (-) True LOC110527722
XM_021609177.2 mRNA downstream 25255 38863019 ~ 38866559 (-) True LOC110527720
XM_021609176.2 mRNA downstream 28940 38858868 ~ 38862874 (-) False LOC110527719
XM_021609175.2 mRNA downstream 98757 38770498 ~ 38793057 (-) True LOC110527718
XM_021609171.2 mRNA downstream 134329 38703237 ~ 38757485 (-) True LOC110527716
XM_021609173.2 mRNA downstream 153464 38703237 ~ 38738350 (-) False LOC110527716
XM_021609184.2 mRNA upstream 16984 38933801 ~ 38958580 (-) False LOC110527722
XM_021609181.2 mRNA upstream 16984 38933801 ~ 38963581 (-) False LOC110527722
XM_021609183.2 mRNA upstream 16984 38933801 ~ 39014681 (-) False LOC110527722
XM_021609182.2 mRNA upstream 16984 38933801 ~ 39055212 (-) False LOC110527722
XM_021609185.2 mRNA upstream 147397 39064214 ~ 39123578 (-) False LOC110527723
TU688474 other downstream 252414 38602330 ~ 38639400 (-) True G604484
TU688481 other downstream 294295 38589155 ~ 38597519 (-) False G604485
TU688480 other downstream 294295 38590868 ~ 38597519 (-) True G604485
TU688470 other downstream 296998 38589417 ~ 38594816 (-) False G604484
TU684989 other downstream 3130544 35760699 ~ 35761270 (-) True G601245
TU689636 other upstream 146188 39063005 ~ 39068828 (-) True LOC110527723
TU690234 other upstream 922074 39838891 ~ 39841331 (-) True G606135
TU690660 other upstream 1306738 40223555 ~ 40224167 (-) True LOC110527741
TU691182 other upstream 1712432 40629249 ~ 40629880 (-) True G606973
TU692184 other upstream 2239853 41156670 ~ 41348899 (-) False LOC110527764

Expression Profile