RNA id: XM_021609185.2


Basic Information

Item Value
RNA id XM_021609185.2
length 4708
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC110527723
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 39063005 ~ 39123578 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttttttttcattcaaaaTGGTCACTTCATTTGTACAATTCCAGAGTGAAAGAACAGGCTCACATATTTGTGGGGGGCGGATAGAAAGTGACCAAATATACTAACTTTATGCCAACCAACTTCAAGAGCTGTAGGTAGGCTACTACAGGCCACAGCCCCACTTTGGGGGGGAACATTAGACCAGCATCACAGAGACATTCTGGGACGGAACGAGCTCCACAGTAGATAGTCTGCATGGACTAGAGAGGGTATGGCTGCGCGAGCAAGACTATTTCATTTAGCCACAATTGTATTCCTGTTTTCGAACTACTACTCCGCCTCCCAGGCACCAGGCACCAATAAAGGAAACTCGGACAAATGCAACAATAagGTGCAGCAGAGCCTGCACACTAAAGATGGAGTTGCAGCAGATGTCTTGACCACACCCTGGCTGCTGTCCAGACAGAGGAAGTGCTGGAAGGGGCTCCAGGTCCAGTCAAGTTCTGACGGGAATGGTCGGAAGCGAGGGGTCACATTCCGAACAGACAACTGCTCTGTGAACTGGAGTCCATTGGGGAAGCATGCCATCCATGGAGTGAACAATATGACATTCAGCCACCTCTCCTGTGACAGCCAGGCTGCTGTGGTGGTCCACTGGATGACCAGCCCTCTAGGTATTGAGCATGTGAAGGGTTTCAGAGTATACCTGGAGGATAAGAACCCAGAGGGCAAACGGTGTCAACACATGATCCTCAAAGACCCACGACCGCTCAACTTCTCCTACAAGACTTTGAAGATGAGCTCACAGCCCTTCCCTGGCCTGGCCTATGAGACCGATTACATGGTCCGTGTTGTTCCCTTCCCCACCATCATGAACGACAGCTTCTTCCCCCCATCCTTCCTGCGCACAAACTCCTGTGAAGTTCTACTGGGTCCAGACAACCTGGTCTGCAAACCATTCTGGAAGCCCAAGACTCTCAACATCTCCCAGCTGGGCTCCAACCTCCATGTTGTCTTCGACCACGCCCCCTCCACCTTCGGCTTCACCATCTACTACCTGTACTACAAACTACGACAGGAGGGACCATTCAGGCTTAAACGCTGCAAACCGGAGTTTAATCTGCCCATGACGACATGCGTTCTTCAAGATGTGATACCAGGAACCTATGCGATTGAGCTGAGAGATGACACCAACACTACCAGAAGACAGGCCCAGTACCACGTAAGCCAAGTCCACTCCCCGTGGGCAGGGCCTATCAGAGCCATGGCCATCACTGTCCCTCTAGTCATCATGTCTGCCTTTGCTACACTCTTCACTGTAATGTGCCGGAAGAAACAACAAGAGAATATCTACTCCCATCTGGATGAGGAGAGTGCGGAGTCATCGTCTCACACCACAGCTCTGAATGCAGACAGACCCTGGCCCCGGACTAAGGTGTTTGTCTGCTACTCCACTAAGGACTGCCCCAAACACCTCACAGTCGTACAGAGCTTCGCCTTCTTCCTCCAGGACTTCTGTGGCTGTGAGGTGACTCTGGACCTGTGGGAGCACCTGCAGATCTGTAAGGAGGGCCAGATGTCCTGGCTGAGTCGGCAGATAGATGAGGCTCACTACATCATCACTGTCTGCTCCAAAGGCCTCAAGCACTATATAGAGAAGAGCCGCAGGGGGAAATCACCAGCCAGAGGTGGAGCAGCTGCAGCAAACGGAGCAGAGCTCTTCATCGTCGCAGTGGCCATGATTGCGGAGAAGCTCTGTGAGGCGCGGCAGAAAGACCAGGACCTGTCTCGCTTCATGGCCGTCTACTTCGACTACTCCCACGAGGGCGACGTCCCGACCATGCTGAGCCTGGCTCCCAAGTTCAAGCTCATGGATCAGCTCCCTCAGATGTTCGGCCGCCTCCACTCCCGCCAGCTCAGTTTACCGGAACGCGAGCCGCAGCCGCTCAACATCAGCAAGAGGAACTACTTCCGGAGCAAGTCAGGGCGGTCTCTGTACGTGGCCATCTGCAACATGCACCAGCACATCTCATTGGAGCCTGATTGGTTCGAGAGGCAGGTGAAACCCGCTCCTCTGGCACCGCGTGACGGTACGTCATTGTCATCATCGTCGCCTCGCATGGAGAAGTTTGACTCTGGGCTGGTGCTCAACGAGGTTTTATTTAAGTTGCCATCAGAAAGCGAAGGTACTCTGATGAGGAATGTGCTGCTCACGTCTCTTCCTCCCAGCCTCAGCCTGGCCCACTGTTCCCTGGACAGACCCGGGGGGCCTGGGAACAGCCTCTCCAGCTCCAGCTTTTCTCAGGGGGAATCTGGGTTCACGTCGGGGGCCTCGTCTGGTTTGGGTCCTCTGGCTCTGAGGTCTCTGAGGCCTGTCGTACCTCCCCAGGCTGGAGATGGGTCAGCCAGTCCCCCAGAAATGCCCCGGGACTCTGGGATCTATGATTTGTCAGTGCCCTCTTCTGAGCTGTCCATCCCCCTCATGGAGGGCCTGTCACCTGACCAGGCTGACTCCTCCTCCCTGGCCGACAGCGAATCATCTTCTTCCGGACTGGGTGATGAGGAGCCCCCTGCTGTCAGCTCTCTGCACTACACCGTGCCCACCATCTGTAAAGCTGAGCTTCATCACCATCTAGAGCAGTCTGAAGGACTGGGACTCTTTCCTGTTCCTCCCTTGTAGTGAACTTAACAACATTACATTACCTGGACATGCATGGCCTGTTCATAAGGAATCATTGGATCAAGCCCAGTGACCAAGCCCATGGATTCTAGTGATGTCATCTGCTTCAGAATCTCTGTGGGCTGATAAAACACGGAGGAATGATGTCACGTTTTAGAACGCCGAGGGTGATGTCACTGTTTTGTGAACCTTCTAAGTAGCGGTTGTGTGACTGTGAAGGCAATGCATTATTTAACAATGGTTGTATGTTGTTTTGCAGTGCTGTCCTGTAATTGTTAGTGGTGTAAAGATGTTGAATTCAGACTACACTAGATCTGCTTTTTAAAACACCCCACGCCATACCAGGTTACCAGTTCATCAAATGGCCGACATCAATGTTTCTCAACCTTGGTCCTCTGGTGCATCAAAGAGGTGACACATTTTTGTTCCAGCGCAGAAACACCTGCTTCAACTCCTCTACTGATAATCAAATCCATGATTACTCGAATctggtgtgttagtgctgggcttgAACACAAATGTGTGACTTCAACGATGTAGTTTGTTAAATACAGGGACAATTATGTTTTGAATGAAAGAGCATTTGTTTGTtactttattttaatttattgTCAATGATGAAATATGAAATAACTTTTTAAAGTATTGTACACCAACACAAGGATACAAGGTGCTGGAACTGAGTGTCAAAGCACttttacttgtttaaaaaaaaaaatgtaattctcgCACCAATTTGGTTTACTGATAGAAAAGGTTTTGACAACTGTTGTGTAAGAGAGCAGATAGGTTGGGAGTACTCACATTTGTATCATATTTTTCAAACCAGCAGTTATGACAATGTTATCTCACAGTAATGGACAGGGGTTTGATTTTAGGGGCATTCTCATTTTATAAACTAAATGCCTTTATTTGGAACTTGGGAAATATACTGTTATTCAACTCTTACAGAGCGAAAAGTAACCCCGTCTTTGTGGGTCTACTTCAGTGTATGTTCTAACAATGTTTTAATGTTTTCCAGTGCCAGTCATTTTGACAACACATTGTTTTTGGAAATAATCTGTTTTATTCCAGTTTTGTATAGTTTTtagtttctttttttttctctacgTTTTATATAAACACTTTGTACTGTTTTATAGTACTCTAATGTAGGAAATAAGCAAAAAATGAAATTGTAATTTGTTCATTATTGAAGCCTCGGACAAGTCAAGGAGACGAGATTTAGAAGGATGGCTCGGTGAGACACAACCCATTTTCCTGCTCAAAGTGTGTAACTAAACAGGCAAGAACACAATCTGAAATATCATTTACACCCTTTTAGATGGCAACATAGATGTATATTTGATATCTGCCCATTTTGAAGTGGCAACTGATTTCACCAGTAGCACTGTGCCAAGTGCACCGTAAGTCCAAGGTCAAGATACAAACTGGTAGTTAAAATACAATGTAACCTATTGCATGTTTTAGTAACTGTCAAATGTGGTGTAATAATTGGTTGGGATAGAATTTATTTttcaccctacccctacataagTCACGTTAGTTTGCCTATTATAAACTTTATGGCTTGCATTAGGACTGACAGTCCGTCAGCACTGCTCAAGTTCAGTAGCAATATGGGAAGTTATTAACCATTATTaatctacatttaaaaataaaaaaaaataagattATGTAGATTACCATCCCATGGTGAATAGACTCTACTATTCAAAAGAGAaaatcactgtagagagaggattAGAAATCACACCAATGACTACATTTCCTATAGGCCTACTTGGTGTGTTACACTCTACACAACTCGATTCTGATACGGGGGTCCAGAACATAATTACAGATCATTTGACtgcaaaccttgcttacatttgtatacgatcacgtctattatgtgtgggaatgcttgaacagatttccaaaattaaaatctctTGAAGCAGATGGCCAACAGTGAAAAATCTATAAAACAagcatgtttttatttattgtgttttgctcagaaaacttgggtgTCCAAATAAAATCACTGGCCacaagttggggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU689536 lncRNA downstream 9158 39021270 ~ 39055056 (-) True LOC110527722
TU689534 lncRNA downstream 49582 38977838 ~ 39014632 (-) False LOC110527722
TU689531 lncRNA downstream 133198 38930747 ~ 38931016 (-) True G605461
TU689530 lncRNA downstream 134504 38929422 ~ 38929710 (-) True G605460
TU689524 lncRNA downstream 140750 38923224 ~ 38923464 (-) True G605454
TU689632 lncRNA upstream 7868 39131446 ~ 39131982 (-) True LOC110527724
TU689626 lncRNA upstream 72035 39195613 ~ 39244946 (-) True G605555
TU689761 lncRNA upstream 142096 39265674 ~ 39270145 (-) True G605680
TU689804 lncRNA upstream 205401 39328979 ~ 39329740 (-) True G605721
TU689834 lncRNA upstream 282933 39406511 ~ 39406727 (-) True G605750
XM_021609182.2 mRNA downstream 9002 38933801 ~ 39055212 (-) False LOC110527722
XM_021609183.2 mRNA downstream 49533 38933801 ~ 39014681 (-) False LOC110527722
XM_021609181.2 mRNA downstream 100633 38933801 ~ 38963581 (-) False LOC110527722
XM_021609184.2 mRNA downstream 105634 38933801 ~ 38958580 (-) False LOC110527722
XM_021609180.2 mRNA downstream 147393 38893769 ~ 38916821 (-) True LOC110527721
XM_036983218.1 mRNA upstream 7863 39131441 ~ 39163634 (-) False LOC110527724
XM_036983219.1 mRNA upstream 7863 39131441 ~ 39163634 (-) False LOC110527724
XM_036983220.1 mRNA upstream 12875 39136453 ~ 39163633 (-) False LOC110527724
XM_021609188.2 mRNA upstream 56126 39179704 ~ 39181249 (-) True LOC110527726
XM_021609190.2 mRNA upstream 87656 39211234 ~ 39227773 (-) True LOC110527728
TU688474 other downstream 424814 38602330 ~ 38639400 (-) True G604484
TU688481 other downstream 466695 38589155 ~ 38597519 (-) False G604485
TU688480 other downstream 466695 38590868 ~ 38597519 (-) True G604485
TU688470 other downstream 469398 38589417 ~ 38594816 (-) False G604484
TU684989 other downstream 3302944 35760699 ~ 35761270 (-) True G601245
TU690234 other upstream 715313 39838891 ~ 39841331 (-) True G606135
TU690660 other upstream 1099977 40223555 ~ 40224167 (-) True LOC110527741
TU691182 other upstream 1505671 40629249 ~ 40629880 (-) True G606973
TU692184 other upstream 2033092 41156670 ~ 41348899 (-) False LOC110527764
TU692185 other upstream 2033092 41156670 ~ 41348899 (-) False LOC110527764

Expression Profile