RNA id: XM_021609189.2


Basic Information

Item Value
RNA id XM_021609189.2
length 2051
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110527727
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 39191081 ~ 39201578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGGAAGCAGTCATCATCAGTCGTAGTCTCATCTGACCGGCTCCATGGCAAAACAAGACCTCTTTATGTTTTTGCATTTATTTTCTGTCGTTTTTCTGCAGCTTTCTTTGTCCTTTGATCAAGTGCCTGCTGTTGTGGAGAAAAGTTTAGGGGGACCCACATCCCAAGATATCAGGGTTCAAAACAATGGACTGGCTTCCCAGAGCCACAGTGCTGCTTCCGATGGGGACAGTTATTTGCTTGTGGTGGAGCACCCTCTCAGAAGAGTGCTGCAGCTTTATGGGTGGCAACTGGACTCGCCACACAGAACCAAAAGGAGGCTACTGCAGACATCGAGCACTCTTCCTTACTCTCCTCTGAGCGTGGTTTACAATGgaaaaacatgtatcctgtttagGGCCAGGAAGATTGCTATAAGGTTCAGGAACAGCACTTTAGTGGATCTCACAGAGAAGGCATTCGGTCCCGACGCACCGGTTGACACCAAAGGCTCCATGTGCAGCAAAGATAAAGCTACGCTTGTTCTACGATTTGGAGATGTGGAGGACTTGAGAGGACTTGCCATAAGGCTACAGATGTCCAACACATTCTATGAGTCGGCAGGGCAGAACTGGTTTACTCTGGACAGCGTACACATCCACTACAACTGGACCCACGAGGCTACGTTCAATGCCAGCGACGTGTACGCTCCTAGTACCTACTCCTACCACTGTCAACACGTCAGCAGTCTGCAGAAGTACGACACGCTGCTTGTACCAAGCTCCATCACAGACAACTCCGCAAACTGGCACATCACCTTCACAGACTTCCAGTTACAATCGTTCAACGTGCTGTCCAACAAGTTTGCCTCAGCCAGCGACTGCGCTACGTTCTTCACTCCGGCAATCCTCATGGGTCTGATcacctccctcatcctcctcctggtCCTGGCCTACGCTCTGCACATGGTGGTGCATCTCAAACACATCGACACCTACGAAGAGCACAAGACTACTGTCTACTTCCCTCGCAGCTCAGAGACTGCAGAAAGCACCGATGCCACCGGCTCCACCGCCACTGAGAAAAACAGCTTGTAGGACTCTGTTTCCCAGGATCCACCTCAGTCTCCACCACTAGGAGTATAGACCGTTTCTGTAGTTGTCAGAGAGTGACTGTGCAGGGGCTCCAACTGAGACCCCTGATGCCTGGCAGGccgactgattgactgactcaactctagatATAAAGCAACCTCCCATACTGAAGGACATGGTCATGTTGCCTGGACTTGATATGGTCGTCCACTCTGGCATTGCTGGACTCAGGCAGTGGTTGTCCATCCCCGGTAGATCCAATACTTTGCGGCTCAGCATCATCTGGTGGATTTGGAAACAACTTTGGAGGACACTAATCCTGAGACATTAACCACTTATCTGGCATTGCAAGTGAAAAATAAACTAATAATTATGTACTCTTGAATGAAATTCAAACTGATAAAAGCACAAAAAACAATTTATTTTAGTTCCTTGTCAGTACTATAAATTCTGGTATATTGGATAAAGAAGTTTCATTTGAATATCCATACCCTAAACGGTACATACCGTAAAGGGTATGCAGTATATACTATTATGTAATTAATTAATCTTTGTTGGATACGCAATTGGTTACATTCTGATGTTTCAGACCTGCAGAGGATGTGTTTTCAAGAACTTGTCTTATTGCGAGCTTTTGTGAAAATAATACTGTATGTGAATTCTGGTTTTGTAAATTTTATTTGGTGTTTTTAATTTCTCAAATGTGTATTCTTCTTACAAGGTGGGTCTTCAATAGTTTTCCAGTTAAAACATTATATTGTCATTGAACTATTTAAAAAGCAGTTCAGATTGCCAGAATCACATCAACAATTTACTGTGATATGCATCATGCCTGTGGCTAGAAAATACATTTGCATACAACAGTACGTTACTCTGATGGGCAAAATTTTAAACATTTTCTAGGAACCTATTGTTATGTACGTCTCATTTATCTGTAGGCTATGTGTTTGGACAAAATAAACCCAAGTTGGCTGAAA

Function

GO:

id name namespace
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU688961 lncRNA upstream 51445 39138458 ~ 39139636 (+) True G604923
TU688923 lncRNA upstream 106591 39078190 ~ 39084490 (+) True G604891
TU688882 lncRNA upstream 170552 39020309 ~ 39020529 (+) True G604853
TU688829 lncRNA upstream 230907 38959962 ~ 38960174 (+) True G604803
TU688819 lncRNA upstream 244190 38946584 ~ 38946891 (+) True G604793
TU689072 lncRNA downstream 123543 39325121 ~ 39333637 (+) False G605027
TU689073 lncRNA downstream 123543 39325121 ~ 39333637 (+) True G605027
TU689115 lncRNA downstream 137288 39338866 ~ 39339150 (+) True G605063
TU689129 lncRNA downstream 152051 39353629 ~ 39353918 (+) True G605077
TU689131 lncRNA downstream 153941 39355519 ~ 39355791 (+) True G605079
XM_021609174.2 mRNA upstream 487037 38690340 ~ 38704044 (+) True lhfpl5a
XR_005052577.1 mRNA upstream 923735 38260379 ~ 38267346 (+) False LOC110527711
XR_005052576.1 mRNA upstream 923735 38260380 ~ 38267346 (+) False LOC110527711
XM_021609166.2 mRNA upstream 927555 38260392 ~ 38263526 (+) False LOC110527711
XM_021609163.2 mRNA upstream 1020827 38162615 ~ 38170254 (+) True LOC110527709
XM_021609192.2 mRNA downstream 27123 39228701 ~ 39238479 (+) False LOC110527729
XM_021609193.2 mRNA downstream 27127 39228705 ~ 39240208 (+) True LOC110527729
XM_021609195.2 mRNA downstream 90078 39291656 ~ 39308642 (+) False LOC110527730
XM_021609194.2 mRNA downstream 90078 39291656 ~ 39310234 (+) False LOC110527730
XM_021609196.2 mRNA downstream 100125 39301703 ~ 39310234 (+) True LOC110527730
TU688229 other upstream 599787 38584474 ~ 38591294 (+) False G604258
TU688169 other upstream 691419 38499031 ~ 38499662 (+) True G604207
TU686155 other upstream 2100325 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 2615009 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 4219676 34971128 ~ 34971405 (+) True G600531
TU690507 other downstream 924956 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 1004991 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 1021597 40223175 ~ 40224171 (+) True G606464
TU690594 other downstream 1029307 40230885 ~ 40231225 (+) True G606469
TU690810 other downstream 1237522 40439100 ~ 40440632 (+) True LOC110527751

Expression Profile