RNA id: XM_021609196.2


Basic Information

Item Value
RNA id XM_021609196.2
length 5227
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110527730
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 39291656 ~ 39310234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTCTTCACTTGACTCAGGACACATTTAAAGAGCCTCTGCAAACATGCTCTCACCTCAGTTTCTGTTCTGTTCACTGTGCATCACTCTGGAGGAGTCACACCCGCAGTCCCTCTGATGGGCTTTCTTAACGTTTTCGAAACTGTTGCACGTTTAGCAGCCGGAGCTTTGGGCGCGAAGGTATAGTTTCTTGAAGGAGGCAGCAGCCATGTCGAGTCCAGGGGAGAGTCTATCATCAGAGGGCAGCAGCCCATTGTTTCCATCCCGCCTAGGTCTGCCTGAAAGCCCCTTGGGAGACAGGACAGGTGCAGAAGCTGGTATGGCCTGGGAGATGGAGGACACCAAGCCCTGCATGGAGGCTCTTGAGCATCGCGGCCTTCCGGGCCTCCACCTGTCCTGCTTCGACATGCTCTTCACCGAGGACTCCACCTGGCTGGTGAAGGTGACCGAGGCTTCCTCGGGTCAGGCTTGTCCCGTGCCTCTTCCCATAACCAGGACCGAGCACCGTGAGGAGCCAGAGCAGTGCCCCGTCATCGACAGCCAGGCCCTGGGGCTCTCACCGGGGCTGGAGGGCCAGGAGGAGGAGCGATCCCTGGAGCAGGTCCAAAGCATGGTGGTCGGGGAGGTGCTGAAGGACATCGAGACGGCCTGCAAGCTGCTCAACATCATCCCAGACCCCATAGAGTGGAGCTCGGGGAACGTCCAGAAGTGGTTGTTGTGGACAGAGCACCTGTATAGACTGCCTCAGGCCGGCAAGGCATTCCAGGAGCTCACTGGAAAAGACCTGTGTGCCATGAGTGAAGAGGACTTCAGGCAGAGGTCCCCTCAGTGTGGAGACACCCTGCACGCCCACCTGGACATCTGGAAGTCAGCTGCCTGGATGAAAGAGAGATGTTCCGTTGGAGACAGCAAAATCACAGGCGGAGAGGAGCTGTGGTTGGAGGCAGACTCGTCATGCTCAGGCCAGCCCATCCACTTGTGGCAGTTCCTCAGAGAGCTGCTCCTCAAACCCCACAACTACGGACGCTGTATCCGCTGGCTCAACAAGGAGAAAGGTATTTTCAAAATCGAGGACTCGGCTCACGTGGCGAGACTCTGGGGACTGAGGAAGAACCGTCCAGCGATGAACTACGACAAGCTGAGCCGCTCCATACGGCAGTACTACAAGAAGGGCATCATCCGCAAGCCTGATGTCTCCCAGAGACTGGTCTATCAGTTTGTCCACCCAGTATGAGGGGACGGAGGAGGACAGAGGTCTCCAAGGAAAGGGCCACACGATCACACCTTGCACTTGTACATTACACCAACGCCAAGCTGAAAAGGGGTGAAACTAacaagcatgcactgaccaacccCTGTAAGTACACATAGCCTTTGCCAGCCTTTGCCAGTAAGTGTCAGCAGTCAAAGTTGGCAAATGAATATTTCGCTTTTTTTTAATGCAGAGAAGAAACTTGAGACTAAAATGAAAGTGCTTTTTCTCCGGGCTGATTCCTCTTCAGAaccacaaaacaacaaagaaagaaaaagaaaaaaaacttttgaaCTGCCTTTTTCGTTTGCACGATCTGCCTGTCCTTTTCCCTATTATATCATTTAATCAATAACCCGTATCTTAAAACACCGGAAGacaacatttgattgattgattggcatCAAACATAAGGAAGAGAAATTGCCATTGCCCACAGTTATACATTATGTACctgctgtgtccctgtgtgtaggaCGAAGAACAGTCTGCGTGTGCTTGTTTATCAGAGCCTGTTCTACTCATTCCTCTGGGAATGTGGTTAGGAGTTTTGCTTCGGCTATAGGGTTCAGCTCTGGCTTTTGGCTGTCACCCAGAGAGGCAAACAGCtcactctttcttttttttcatgATTCACATGGCACACTTCCGAACTCTCCCGAAAGGCTTTTACAATAGAGCATTTCGCTGAACCCGAATGGGAGTGCAGCAACAACCCCCTCATAATAAACTCATGCAGTCAAAGTCTGTAACTGACTGGTAAAAGCCGTTGGTTTTCCACCCTGCCGTAGAAAACATCTAGAAAGCACCAGACCACTGTATATTACCATATATGTCATATGCTCTGTACCTTTTGCTTGCGTTTAATTGTAATAGCATTTATTTGAAATGTAACCAAAAAAATATAGATAGGAATATCTACATCAAAAACTGTATCCTCCACCATCTTTACCATTGCAATACAGGTTCAATTCTTGAAAACAAGCAGCATCACTAATCTCATAATTGATCATTACCAATTCTGTTGAATTCTATGAAgtatacaataaaaaaaatgtgggtTCCTCGAGGGGTTTTTGGTAAGGGTgctggttctatgtggaaccataatGACCCAAAGAACCCTTGGAGCCCTTCAATGGTTCTTTGAGGTTCAAAAAAATGACATGTAGCAGCAGCAGCTCATTCAAATACTTTGGGACTTGGCTTGCTCACAGCTCTTTCTGTGCAACCGTGAGTGACTGTCCTTCCATTTGATCTAATCTGTTGTGTTACGCTATTTATTACATGTTATGTATGATTATGGTCAGTGACAGTGTCTTGTGAAAGACTCACGTATGGCCTTGTGTCAATTGAGAATGGTTGACTAAGTCAGTAGTTCTCaattctctcctcagggacccccagccgTTCCAGAACTACCACACCTGATTGAACTTGTTAATAAACACAATAATAAAAACTATTGCATTTTAACCGTATATTATGGCTTTTAATCCAGAATAAAAACTCATGTATGTTTCTACAAAGAACCACTGAGATTGAGAAAGGTTCTTTATTGAAGCAGTCTCCGTGAAGGTTCTACATCGAAACCATaaaaaaaaagggttctatattGCCCCAAAAAGGGATGTAATCATAGCGGAACCCTtttttggtgctatatagaaTCTTTTTTATGCTTCtttataaaacattaggaacgagTTCTTTAGAGCACCATACAGGCtccatttagaaccttatgagcatGGTTTTTATAGAAGAAAAGTTCCACATATAAACGGGTTGGCTGACAACTTCACGGAAATAATGAGCTCGCATCGATGAGGTAGATGGCCGTGTGGTGTTATGATTTTGAACAGTCagctaccaacaatgacaagaagctgcaatgtggggaatcgtaggtggctcaCTTCGGCTCGTGTCTTGTTGTTCCCATGTATTATTACGATCTCAAGCACATTCTTGGTAACCTGCATAGTTCCAGCTAGCTGGATATATTCGTCTGAGCATACAATCCAGTCTAAACTAAAGCCTCATTCACACCTTGTGCTATCTAACATGAGGCTTTCATCATCTGATCAAGATGATTCCATCACTATCTGATTAAGGTCTGTTAAGTCTGCAAATGGTAATAAAATGTATCTCTTATACAGGGggacaactttggttttagaagtgggtgGGACATAATCTGGTGGGGGGTCTGGAGGTCCTCCCTCAGAATTTATGGACATCTTAAACTCATTTCCTGCATTTCCACAAAATCGaatattgaaaataagaatagaatatgtttctaaatacttctacatgaatgtggatgctaccatgattatgaatAATCCTGAataaattgtgaataatgatgagtgagaaagttatagATGCACAAATgtcaaaatgctaacctcccctgttattgtaatggcgAGAGGTCTCCTGCTGAGACCCCTGTCATCCATTCACTGATTGTTATAATACactgcaaaattcacctgagctcTGTAGACTgctcttccctggctgtctgaccctgatCCAACagctgtcaccatctgatcctgctaagagatgatgagcatagtgttgtgtgCTGACTGTGCATTGTGACTGTGAAGCCTACAGAGCTGTTTATACcgtgtcagtgtgaaaagtagggagttagctagggaaactgacagatcaatgCTATACTGACTGTGATTGGGGCCAAAATGACATCTAACTTTAGCCAACTTTTGACTAGCTCCAATGGTACATTAACTGGCATAAACGAGCCAAGTTAATTTACTTCTGTTGAccaaacaaaggctacaaaacatttccatacacacaacagCTGTTAGATACTGTTACCTGACAGATAGCTAGAGGCTAGAGCTGAACTGACTGTGGTacactagctggctagctagttaattCATTTCAAACAACTAGAGGGGATGAAACATTATCTAACATGTCAGTTGCACTACTAGCTCAGCGCTGGGaatatttttttcttctgttgAGTCAAACAGCTGTTAGCTGGCCAGTTATATCAGTCAAATAAAGAGAAGCCAGTTTCTGATGTGCTTGCTTTTGCAACTTAAAGAAAAAGCACAGTACATACAGACAACAGCTACCCCAGTTCACACTCTCTGTGGTGTCTGCACGGTCCTAAATCCAGCCGGCTGAAACCACTGAAATCACCTACCCGACCTCTCTgtggcgtccgcatggtcctaaagcacacctaTGCCGCTTTTTGTAACACAATGCAGTGATAAAACTGGGGAATGTAGGAGGGGTCATGCCCCCCCATCCCCCGTCCGTCCGtacccagtgaaagttgcacccctgctcTTATCTGTCAACCTAATCTGCACTGTGATCAGATTTTCTGGTCCATCCCTGTATGCAAATTATTTGGCAGACGTAAGACAGTTATTGATGCCATTAGTCAATGGTGTTACCTGTCCATGATTTTACAGGGCGGAATAATTATGATTTAAATCCAGGTCTGTTTACAGAGACAATGGGTCCCTGACTACTTCCGGAGATGGTCAGGAAGATTGGATCACAAtcagaacacagtgttttagtAATCTACCCGTGTCTAAACATGTGGATCAGAAGGTGGACAAGATCAGAACACAGGACATAttttagcaccaggtataaacaaGACTTAAATGAGAAACATTAAAACACTGATTGCGACCAAAGATTCCCTTTGCACATGATATTTGTAAGATGATGtgaagtgccttcagaaagtattcatacaacTTGACTTACTTCAAAAATCTATTTAACATTGACAATACCCCATatttacaaagtgaaaacatgtttaaagattttttttgcaaatttattgagaaTGAAATACAGAAAAATCTAATTTACGTACGTATTCACATCTCTGAgtcaatacagtgccttcggaaaagtattcagaccccttgacattttccacatttt

Function

GO: NA

KEGG:

id description
K09442 SPDEF; SAM pointed domain-containing ETS transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU688980 lncRNA upstream 56751 39195655 ~ 39244952 (+) True G604940
TU688961 lncRNA upstream 162067 39138458 ~ 39139636 (+) True G604923
TU688923 lncRNA upstream 217213 39078190 ~ 39084490 (+) True G604891
TU688882 lncRNA upstream 281174 39020309 ~ 39020529 (+) True G604853
TU688829 lncRNA upstream 341529 38959962 ~ 38960174 (+) True G604803
TU689072 lncRNA downstream 14887 39325121 ~ 39333637 (+) False G605027
TU689073 lncRNA downstream 14887 39325121 ~ 39333637 (+) True G605027
TU689115 lncRNA downstream 28632 39338866 ~ 39339150 (+) True G605063
TU689129 lncRNA downstream 43395 39353629 ~ 39353918 (+) True G605077
TU689131 lncRNA downstream 45285 39355519 ~ 39355791 (+) True G605079
XM_021609193.2 mRNA upstream 61495 39228705 ~ 39240208 (+) True LOC110527729
XM_021609192.2 mRNA upstream 63224 39228701 ~ 39238479 (+) False LOC110527729
XM_021609189.2 mRNA upstream 100125 39191081 ~ 39201578 (+) True LOC110527727
XM_021609174.2 mRNA upstream 597659 38690340 ~ 38704044 (+) True lhfpl5a
XM_021609166.2 mRNA upstream 1038177 38260392 ~ 38263526 (+) False LOC110527711
XM_021609203.2 mRNA downstream 60496 39370730 ~ 39376856 (+) True LOC110527735
XM_021609206.2 mRNA downstream 122955 39433189 ~ 39773724 (+) False LOC110527736
XM_021609216.2 mRNA downstream 682532 39992766 ~ 40027458 (+) False LOC110527739
XM_021609219.2 mRNA downstream 973319 40283553 ~ 40287403 (+) True csrp1b
XM_021608251.2 mRNA downstream 981806 40292040 ~ 40296179 (+) False tnni1b
TU688229 other upstream 710409 38584474 ~ 38591294 (+) False G604258
TU688169 other upstream 802041 38499031 ~ 38499662 (+) True G604207
TU686155 other upstream 2210947 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 2725631 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 4330298 34971128 ~ 34971405 (+) True G600531
TU690507 other downstream 816300 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 896335 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 912941 40223175 ~ 40224171 (+) True G606464
TU690594 other downstream 920651 40230885 ~ 40231225 (+) True G606469
TU690810 other downstream 1128866 40439100 ~ 40440632 (+) True LOC110527751

Expression Profile