RNA id: XM_021609206.2


Basic Information

Item Value
RNA id XM_021609206.2
length 5310
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110527736
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 39433189 ~ 39773724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGAATCTACGTAGCCTAAATCAAAAAGAATATCAGCACCATTAAGTGCATGGCGCACTCTTTCTTGGCATGTGGTGTAACTGGTGTGCGATTGTTAAATATTTGTGATTTTTATCCCGTTCTCAGCAGCGGCATTGAAACAGAATTGATAACAATGGTTTTACCACAATAATATGTGCATTTTGCTGTTTAGCATTATGATCAAATTAATTCAGTGGGCGCTGAGTGCACTCCATCGATTCGAGGGTGCTGTCTCCATTCCGCGGGCGTGCAATGTTTGCTTCTCAGTCATCTTTATTATTAGGACATGTCAGTATATGTTCTTTAAAGTTAATAAGTGACTGTAGCATAACCGCTACTAAATCCGCTGGTCAATTCGATTTATCGGCAATTAGCAGCAGGCAACGAAAGTTAGGCGAGTCCAGACTTTCAGCTCCACTTTCCACTGGACAGCGCTCGAGCAGCTTTGGAATCGAGACAGCAAACGCATGGATTTCTTTGGGATATTTCAAACGATGGAAGGAGTTTTTTGGAAGTGAGGTGGAGGACATTCTTCAAGTGGCCTAATCTACACCCTATTACCAACAGGAACAACATTTTTTGTTTATTCTCACATCAACATGTTAGTGAATTGGATATGGGTCAGTTCACACATAGAAGATTCTACCAGAGAAGGATAAAGGGGAATTCACTCAGCAGCCCGGAGACCTGAGCggcctgaacccccccccccccccccctgtgaggGATCTCCATAGGCAGGGTGGTGAGTTAGTGGGCCGAGGAGCACAGTGGGCAGAGGAGTGCCCACCACGTTGGTCAGACCATGGAGTGAGGAGGAAAGAAGGAGATGCATATGTAAGAAAGGAAGAGGAGATATCCTTTGAAGAGCCATCTAAATTAATGCTCCTATTATAATTGAGTGCTTCTGAGAGCAAAGCAACATGAGAGGACGCCTGTTCTGTGCCCACTGCTTCAAGAGGTATTATTAAGATTAACCCTCTGGATATAGAGTAGACTAGTGTTCTTTGTGATCCTGATTCCGCTGGTTTCTAGAGTGTGTCTTGATTTGTGTCTGGGCTGTGGTCATGGTGTCTCAGCCCCAGGGGTGTGCTCTGCATCGGACTGGCAGGATCTGTCACAGAGGCAGCCTGATCAGGCTCTTACTCCTTCTTTACTGCTCTCTAACGGCCGCCCAAGCCGCTAAACCCAAAGTCCCGAGCGGCACACACCTCAACTCCATCCGCATCGACGGGGATATCTCCCTGGGAGGCCTGTTCCCCGTGCACTCCAGGGGCAACGAAGGCAAGGCCTGCGGGGAGCTGAAGAAGGAGAAGGGGATCCATCGTCTGGAGGCCATGCTGTTCGCCCTGGACCGTATCAACAACGACCATTCCCTGCTTCCCAATATCACGCTGGGGGCGCGCATCCTAGACACGTGTTCCCGGGATACCCACGCCCTGGAGCAGTCACTCACCTTCGTCCAGGCTCTCATCGAGAAGGATGGGACGGACGTCAAGTGTCTCGGCGGGGGGGCACCCATCATCACCAAGCCTGAGAGGGTGGTGGGAGTCATCGGAGCCTCGTCCAGCTCTGTGTCAATCATGGTGGCCAACATACTGCGGCTCTTCAAGaTCCCCCAGGTGAGTTATGCCTCCACGGCACCGGAGCTGAGCGACAACACACGTTACGACTTTTTCTCGCGAGTGGTGCCCCCGGACACCTACCAGGCACAGGCCATGGTGGATATCGTCAAGGCCATGCGCTGGAACTTTGTCTCCACCGTGGCGTCCGAGGGGAACTATGGAGAGAGCGGTGTGGATGCCTTCATACATAAGTCTCGAGAGGACGGAGGTGTGTGTATCTCTCAGTCGGTCAAGATTCCTCGGGAGCCAAAGCCTGGAGAGTTTGGAAAGGTCATCCGCCGACTAAGAGAAAACCCAAACGCAAGGGTGGTCATCATTTTCGCCAATGAGGATGATATTAGGCGGCTACTCCAAGCAGCCAAGAAGGCCAACCAGACTGGCCATTTCATCTGGGTGGGCTCAGACAGCTGGGGCTCAAAGATATCTCCAGTGTTACACCAAGAGGAGATGGCAGAGGGAGCTGTCACCATCCTGCCCAAACGCCAGTCCATCAGAGGGTTTGATCGTTACTTCATCAGCCGCACACTGGAGAACAACAGGAGAAATATCTGGTTTGCTGAGTTCTGGGAGAACAACTTCGCCTGCAAGCTGAGCCGACACGCTTTGAAGAAAGGTTCCGGGCTGAAGAAATGCACAAATCAGGAGCGGATAGGGAAGGACTCCAACTACGAACAAGAGGGGAAGGTGCAGTTTGTGATCGATGCAGTCTATTCCATGGCCCACGCGCTGCACAACATGCACAGGGAGCTCTGTCCAGGGAAGGTGGGCCTTTGCTCTAGGATGGATCCCATCAACGGCACTCTGCTGCTCAAACACATCCGGATGCTTAACTTTGCAGGTATTGCTGGCAACCCAGTGCTTTTCAATGGGAATGGAGACGCCCCTGGTCGCTATGAGatttaccagtaccagatcagaaACCAAACAGCTGAGTACAAAATCATCGGGCACTGGACCGACCAGCTCTATCTGAATATCCGAGCAATGCACTGGCCAGGTGGAGGTCGTCAGATCCCTTACTCCATCTGCAGCCACCCCTGCCAGGCCGGAGAGCGCAAGAAAATAGTGAAGGGCATCCCTTGCTGCTGGCACTGCGAGCGCTGCGACGGCTACCAGTACCAGGCAGACACCTACAGCTGCAAGATGTGCCGCTTTGACCTGCGTCCCAACGAGAACCACACGGCCTGCCGTCCCATCCCCATTGTCAAGCTGGAATGGAGTTCCCCCTGGGCCGTCATACCTGTCCTCATCTCCGTGGTGGGCATCATGGCCACTCTGTTTGTGGTGGTCACCTTTATCCGCTACAATGACACGCCCATCGTCAAGGCGTCAGGCCGTGAGCTCAGCTACGTTCTACTGACGGGTATCTTCATGTGCTACGCCACCACTTTTCTCATGATATCTGCCCCTGACGTGGGCATCTGCTCCCTCAGACGGATCTTCCTGGGTCTGGGGATGAGTATCAGCTACGCAGCCCTGCTCACCAAGACTAACCGCATCTACCGCATCTTCGAGCAGGGATCCATGTCGGTGAGCGCCCCCAGGTTCATATCCCCAGCCTCCCAGCTGGTCATCACCTTCAGCCTGACTTCGGTGCAGCTACTGGGGGTGTGTATCTGGTTTGGCGTGGACCCGTCTCAGGCCATCATCGACTACGAGGACCAGCGCATGGCCAATCCGGACATGGCCCGTGGCGTGCTCAAATGTGACATCTCTGACCTTTCTCTGATTTGCCTGCTCGGCTACAGCATGCTGCTAATGGTCACCTGCACAGTGTACGCCATCAAGACTCGAGGCGTGCCGGAGGCCTTCAACGAGGCCAAGCCCATCGGCTTCACCATGTACACCACCTGTATCATCTGGCTGGCCTTCATCCCCATCTTCTTTGGTACCTCCCAGTCCACAGAGAAGATGTACATCCAGACAACCACGCTGACCATCTCTGTGAGCCTGAGTGCATCTGTCTCTCTGGGGATGCTGTACATGCCCAAGGTCTACGTGATCCTCAGGCACCCGGAGCAGAACGTTCCCAAACGCACACGCAGCCTCAAGGCTGTGGTCACAGCTGCCACCATGTCCAACAAGTTCAACCCCAAGGCGAGCCTACGTCCCAACGGAGAAGCCAAGTCTGAGTTGTGTGAGAGCCTTGAAACACAAGcTTTCACCACAAAACAAACATACATCAGCTACAGCAACCATGCAATCTAGGAGAGGAAGGCCATCGTCATTGCTCAGGATGGTCACCTCGTGGAACATTTTCTTATGCAGTGGAAATTGGGGGAAAAATAGAGCAAGAAAGTGGACATGGGACATGTGAGGATCACTAAAGAATTTCATAGGGAGTAGCCATTGTTAAGGACGGAGAAAAGACAAACAGAGATGCAGGAAGGGACCCTCAGGGGACCCCAACAGAACAAATACAGTATAATTGTGATGTTCCATCTTGTGTTGGCCATGGCAGACAAGACAAACACTTCCCTCCTGGCCAGAGTCCAGAGTACAGAGAGGATTCATGCAGGATGGGGCTTCTAATCCCTTCTTGTTGTTTACATTGCTGCGTTACCTTCTCTTTCACTATGACTTCCCATCTCAAGCTGATAATTGAAAGAATCTGTTTAGGTGTGTGCAATTCGCAATGTTGTAGTCTGCCAGTGTTGTCATCAGTAAGTGACATTGCTCTCAGTGCTTCGGGAAGTTGCAGAAACACCAGTTTAAGAGTGGTCCGTCCTTAAATGTCTAGGAAGACTTTAAATCAtgtaattgttaaaatatatacttCTAAAAGTattccagttttttttttaaatactggaTGGAAAAAATTATTCCAACAATGCAGGATACTTGTACTCcatcataaaaaaaatataatgatGTTGACAACAAAGAATATGGTCATTATTGATTTTAAGCATGCCAGTTTGAacatcctgtgttgtgttgttaaaaaaataatatttagaaTGCGTTCAAACTATGTTGCAGTGTCGTTCCCATTGTTTGGGCCTGAGCCTATTGTACGTATTCTCCAAACTGGTCTAGTGATTGATCTTTGTTTATTTGTGCTAAAGTGAGGCCCCTAAAGTGAGGCCCTACAGTGAAATACCATAGCTGACCCCAATCCATTTCCACCAGCTATACTCCTGGTCACACATAGAGGTTTTCATTGATTGATATGATTTATTTAAGCACCATACACCTACCAGTGCCCAGTCCACATGGGATAACACAACACTACTAAATACAATTGTCCTTTTACTCAAGGTACAGCTAAGTTGTACAGATCTAAATCCATTAAAATGGAGGTAAAGTATGCACTGGCGAGTTGCCACACAGTATTCATTCACCCAAGATGATATCCATCACGAGACTAATTcatcacacaaaaaaaatgtcatcTCTGAGGACTGTCATGTTCTGTAAAATGCTTCAGGGATATGTTCGTATACTTTATGACTGATGCCTCAAGCTGCAGAAAATAACCTACTCAAGACAAAATGCAAAAGGATCCAGTACTCATTTCAGTCGCCTACAGCTCTCTGAATAAATACaatatatgaccaaaagtatatggacacctgatcgtcgaacatctcgttccaaaatcatggtcattaatatggggttggtcccccctttgctgctgtaacagcctatgctctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU689178 lncRNA upstream 4077 39428462 ~ 39429112 (+) True G605126
TU689173 lncRNA upstream 9782 39423196 ~ 39423407 (+) True G605121
TU689163 lncRNA upstream 23856 39409129 ~ 39409333 (+) True G605111
TU689162 lncRNA upstream 25608 39407374 ~ 39407581 (+) True G605110
TU689131 lncRNA upstream 77398 39355519 ~ 39355791 (+) True G605079
TU690359 lncRNA downstream 219101 39992825 ~ 40026957 (+) True LOC110527739
TU690515 lncRNA downstream 328332 40102056 ~ 40102303 (+) True G606405
TU690519 lncRNA downstream 333914 40107638 ~ 40107868 (+) True G606409
TU690521 lncRNA downstream 334645 40108369 ~ 40108609 (+) True G606411
TU690525 lncRNA downstream 341864 40115588 ~ 40120632 (+) False G606412
XM_021609203.2 mRNA upstream 56333 39370730 ~ 39376856 (+) True LOC110527735
XM_021609194.2 mRNA upstream 122955 39291656 ~ 39310234 (+) False LOC110527730
XM_021609196.2 mRNA upstream 122955 39301703 ~ 39310234 (+) True LOC110527730
XM_021609195.2 mRNA upstream 124547 39291656 ~ 39308642 (+) False LOC110527730
XM_021609193.2 mRNA upstream 192981 39228705 ~ 39240208 (+) True LOC110527729
XM_021609216.2 mRNA downstream 219042 39992766 ~ 40027458 (+) False LOC110527739
XM_021609219.2 mRNA downstream 509829 40283553 ~ 40287403 (+) True csrp1b
XM_021608251.2 mRNA downstream 518316 40292040 ~ 40296179 (+) False tnni1b
XM_021608252.2 mRNA downstream 518318 40292042 ~ 40296179 (+) False tnni1b
XM_021608253.2 mRNA downstream 518340 40292064 ~ 40296179 (+) False tnni1b
TU688229 other upstream 841895 38584474 ~ 38591294 (+) False G604258
TU688169 other upstream 933527 38499031 ~ 38499662 (+) True G604207
TU686155 other upstream 2342433 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 2857117 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 4461784 34971128 ~ 34971405 (+) True G600531
TU690507 other downstream 352810 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 432845 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 449451 40223175 ~ 40224171 (+) True G606464
TU690594 other downstream 457161 40230885 ~ 40231225 (+) True G606469
TU690810 other downstream 665376 40439100 ~ 40440632 (+) True LOC110527751

Expression Profile