RNA id: XM_021609216.2


Basic Information

Item Value
RNA id XM_021609216.2
length 1771
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110527739
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 39992766 ~ 40027458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTCCTCCACAGCGCCCTCATCTGTGGATCGCACTTCtgctactcactcactcaccctcaACTCATCGCACCATAACACAACATCACTTGAAGAGAGATCACACCGCTGTTTTTCTATCATTAGAACTCTTCAATTTGGATCACAACTCTGGTTCTGTCCCTTCACCACCATTCACATCACAGAGATTTTAACTGTGTGTCACTGGACTGTTTATGCAGTAGTCTTTTGGAATCCCATTGGTTGGACTGCTGGACTGGACCGCTGGACAGGACTGGTGGACAAGACTGCTGGACCAGACTTGAACCCCATGCAGTGTATAGTAGCCTGGGGCGATgtcatctcttctctccccccgcAACGCAAAGGATCAGCCACGCACGACCAAGTCACTCTCTGACTCGTCTCCCACTACACCCTCGCTGTCTTCCAGAGGCATCAAAcatGAAAGAGTGTCCAGACTGGACTCGTCTGGTGCTTACGACCGAGAAGCGTATGACGCTCGCAGGGAAAACAGAATGGCAGCTCGGAAAAAGGCTGAGGAAGAGGCAGGATGCACTGACTATAAGAAGATGTACGAGGAGGCCATGTCTACAAATGAGAGACTCAAGTCCCGGCTTCAGGGCAGCAAACAGGAGCTGGTGTTGGTGCAGACTCAGCTGGAGAAAGTCACACAGAGAAAGATCACAATGACTGAGAGGTCCAATGAGAGGTCCATGCTTGAGAAAGAAAAACGGGAAACACGTGTCCTTCAGAAGAAGATATCAGACATGGAAGATGAAGTGAAGATCCAGACAGAGCTGCAGAATGAGAACCAGAGACTGAAGGACGAGAACGGAGCCTTAATCCGGGTCATCAGTAAACTGTCCAagtgagaggaagaggatgatccAATAATTATTTCCAATTTTTACCCCAACTACACCAtcaccaaccaccaaccaccgCTACATTCAAATCATGACAGGAATGACAGATGGGCGCCAACTTTAAATCCTTTTTTGATGCCCCTTTCACCTTTCTCCTCTGTTGATGGTTGTATTGTACACAGATAGTTCACACACAGTTAGCATATTagcatttttttaaaaatgtatttatggaTTGTTATGATGCATACTCATATCGTCACAGCACATTATACTGTACGAATGTCTACGAAGGTTTAATCTATGAACTGGTGTAACAGTTGGTATATTATGATGTTCCAAGTAACTAAATTACATTTCATGTTTATTTTTAAACTGCACCAGCTGAAAAGTCTCCTGAGCCTTGTATAAATGATTTATAATCCTTTTCGACGCTGCAATCCAATGCAATCTCTTGTATGCACTGTCACCAAATGGTCATGTGTGGTAATGCATCTTACCGCAGAGGCCTACAGTATGTATGACATGATCGACAACCAGGGTTGGTACACATTTGTAAGCACTAATAAAGCAGGTAAAGATTATATGGAGAGGTGAATTTGAAAATGTAATACAAAGACTATGTTGTTTACGAACGACGCAAGACGAGCATACTTAAAAGACCTTTATTTCCTATGATAACATATAGATACGTCTGTGGAGACATTCCATGTTTTGGTTCCCTTGAGGTTCTTAATAATATCACATTGACTGATATATTGATACAAGAGCTGGAGGATATGTAGTCTTTTTGCTGGACAACAACATGTTTGTTGGTAGGGAAATAAATCATGCAATCCACAAAAGGCACaactactgacacacacacacacatacgcacacctCTACAACGAGACAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU689306 lncRNA upstream 406439 39580045 ~ 39586327 (+) True G605248
TU689217 lncRNA upstream 524987 39467577 ~ 39467779 (+) True G605164
TU689211 lncRNA upstream 528540 39463924 ~ 39464226 (+) True G605158
TU689205 lncRNA upstream 536786 39455743 ~ 39455980 (+) True G605152
TU689203 lncRNA upstream 538140 39454411 ~ 39454626 (+) True G605150
TU690515 lncRNA downstream 74598 40102056 ~ 40102303 (+) True G606405
TU690519 lncRNA downstream 80180 40107638 ~ 40107868 (+) True G606409
TU690521 lncRNA downstream 80911 40108369 ~ 40108609 (+) True G606411
TU690525 lncRNA downstream 88130 40115588 ~ 40120632 (+) False G606412
TU690528 lncRNA downstream 88130 40115588 ~ 40125497 (+) False G606412
XM_021609206.2 mRNA upstream 219042 39433189 ~ 39773724 (+) False LOC110527736
XM_021609203.2 mRNA upstream 615910 39370730 ~ 39376856 (+) True LOC110527735
XM_021609194.2 mRNA upstream 682532 39291656 ~ 39310234 (+) False LOC110527730
XM_021609196.2 mRNA upstream 682532 39301703 ~ 39310234 (+) True LOC110527730
XM_021609195.2 mRNA upstream 684124 39291656 ~ 39308642 (+) False LOC110527730
XM_021609219.2 mRNA downstream 256095 40283553 ~ 40287403 (+) True csrp1b
XM_021608251.2 mRNA downstream 264582 40292040 ~ 40296179 (+) False tnni1b
XM_021608252.2 mRNA downstream 264584 40292042 ~ 40296179 (+) False tnni1b
XM_021608253.2 mRNA downstream 264606 40292064 ~ 40296179 (+) False tnni1b
NM_001185028.1 mRNA downstream 265970 40293428 ~ 40295414 (+) True tnni1b
TU688229 other upstream 1401472 38584474 ~ 38591294 (+) False G604258
TU688169 other upstream 1493104 38499031 ~ 38499662 (+) True G604207
TU686155 other upstream 2902010 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 3416694 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 5021361 34971128 ~ 34971405 (+) True G600531
TU690507 other downstream 99076 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 179111 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 195717 40223175 ~ 40224171 (+) True G606464
TU690594 other downstream 203427 40230885 ~ 40231225 (+) True G606469
TU690810 other downstream 411642 40439100 ~ 40440632 (+) True LOC110527751

Expression Profile