RNA id: XM_021608251.2


Basic Information

Item Value
RNA id XM_021608251.2
length 1486
RNA type mRNA
GC content 0.46
exon number 8
gene id tnni1b
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40292040 ~ 40296179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgttctatttaGGGGTCCCAATGACGGGCAGGAGGGACAATAGGAGGCTGAGTTAAATACTCTGGTGCATTCTTCTTCCCATCACTCTGAACCTCTACAGGACATTTCCAACCTCAGCAGAGAAAGGGGAATCTACATTGCCAAGATGCCAGAGCAAGTACAAGAGAAGCGAAAGTCGAAGATCTCGGCCTCCCGTAAGCTCATGCTAAAGAGCTTAATGGTGGCCAAGGCGAAGGAGGAGATTGAGCAGGAGATTGTggataaagaggaggagaaggagaggtatCTGGCAGAGAGAGCACCCACCTTACAGACCGGTGGCATGTCCTTTGCTGAGCTCCAGGAGTTATGTCGGGAGTTACACGCCAAGGTTGACGTGGTGGATGAGGAGCGATATGACATTGAAGCCAAAGTCATGCACAACACCAGAGAGATCAAGGACCTGAACATCAAAGTTTTGGATCTGAGGGGGAAGTTCAAGCGGCCCAGCCTGAGGAGGGTAAGGGTCTCTGCTGACGCCATCTTGCGCTCCCTCCTGGGCTCCAAACACAAGGTCTCCATGGACCTTCGGGCAAACCTCAAGTCAGTCAAGAAGGAGGACACAGAGAAGGAGAAGACAGTGGAGGTGAGTGACTGGAGGAAGAACGTGGAGGCCATGTCTGGCATGGAGGGAAGGAAGAAGATGTTTGACGCAGCCAAAGGCACCCCTcagtagacagagaggagaataCTCTAAATGTTTCCTTCATTTCTATTCATCCTGAACATTCAAAATGTGTTAATGGTTTAAAGTCTTGTTTCAGTGGCACTACAATGCTTGTGTTTATTGTTTAGCAAGGCTTACACAGTACGAGCTGTATGCTGCTACAATCACAATGTTCTGCTTCATCCTCACTGTTAATATTGACCTGAGAAGAAATTTTAGAGTAAATGACAGTTCATGCAATTCCACTCATTTTGACATGAGGCAGAGAAATAATTTTGCCGTTTTAAAGCTTATTTGCTTGCCTGACACCTGAATTTAATTCCGCTATCAATCGCGTCATACATTGTCTGAGACTAGAAGTCGATTGGGCTGATGCCAAAATGAGGGGCGTTGTAGAAAACAAAttcatcagcgattggatcagCTCCAACCAATCCGAGTATCAACGTTGACAAGGTCATCATGCAGGGCAGTTTTGGCCCGACactttctgggaccaatcagaacggtCAGAATGTGGTCGCATTCTACAAGACGTCAGGGAGGAAAGCAAATCTAGACTCATCGGGAAGAAGAAACGCTAGTGGGTGTGACATTTGGCCAGAGGGATGTGGATGAGTAGTCAGGCTACTACtgtgctgcaattctacacattttgccatggggtggagacaaCTTTTTGGTGAATGTGAGATAGTGAGAGCGACTGACAAAATCattaactggttaccaatgtaattagagcagtaaaaataaaagttttgTCATatctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU690627 lncRNA upstream 10107 40281452 ~ 40281933 (+) True G606502
TU690626 lncRNA upstream 12008 40279722 ~ 40280032 (+) True G606501
TU690613 lncRNA upstream 33808 40257883 ~ 40258232 (+) True G606488
TU690608 lncRNA upstream 41975 40249864 ~ 40250065 (+) True G606483
TU690596 lncRNA upstream 58679 40233053 ~ 40233361 (+) True G606471
TU690801 lncRNA downstream 55117 40351296 ~ 40351759 (+) True G606657
TU690815 lncRNA downstream 62646 40358825 ~ 40360516 (+) True G606670
TU690847 lncRNA downstream 118561 40414740 ~ 40417069 (+) True G606700
TU690853 lncRNA downstream 133438 40429617 ~ 40429902 (+) True G606705
TU690856 lncRNA downstream 137094 40433273 ~ 40433521 (+) True G606708
XM_021609219.2 mRNA upstream 4637 40283553 ~ 40287403 (+) True csrp1b
XM_021609216.2 mRNA upstream 264582 39992766 ~ 40027458 (+) False LOC110527739
XM_021609206.2 mRNA upstream 518316 39433189 ~ 39773724 (+) False LOC110527736
XM_021609203.2 mRNA upstream 915184 39370730 ~ 39376856 (+) True LOC110527735
XM_021609194.2 mRNA upstream 981806 39291656 ~ 39310234 (+) False LOC110527730
XM_021609225.2 mRNA downstream 8943 40305122 ~ 40314447 (+) False tnnt2b
XM_021609226.2 mRNA downstream 8943 40305122 ~ 40314447 (+) False tnnt2b
XM_021609222.2 mRNA downstream 8949 40305128 ~ 40314447 (+) False tnnt2b
XM_021609224.2 mRNA downstream 8949 40305128 ~ 40314447 (+) False tnnt2b
XM_021609220.2 mRNA downstream 8951 40305130 ~ 40314447 (+) False tnnt2b
TU690594 other upstream 60815 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 67869 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 85143 40206569 ~ 40206897 (+) True G606452
TU690507 other upstream 157590 40126534 ~ 40134450 (+) False G606400
TU688229 other upstream 1700746 38584474 ~ 38591294 (+) False G604258
TU690810 other downstream 142921 40439100 ~ 40440632 (+) True LOC110527751
TU691186 other downstream 338002 40634181 ~ 40634439 (+) True G606977
TU692153 other downstream 1166645 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 1531032 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 2524777 42820956 ~ 42821245 (+) True G609436

Expression Profile