RNA id: XM_021609226.2



Basic Information


Item Value
RNA id XM_021609226.2
length 1060
RNA type mRNA
GC content 0.44
exon number 13
gene id tnnt2b
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40305122 ~ 40314447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGATCCTCAACAGGGTTTAAAAGCTTATGGTTCCAACAGAGACTGGTATACAATACAATCCCACATTGTCCCCCCCATCTCAAGCCCACACTGCACCACTCTGGGTAAATTCTAAAGATGTCAGACACAGAAGAGGTTGAATATGAGGAGAAAGAACACGCCGAGGGGGAGCAGGAGGAAGGAGGTTGGGCAAAACCTAAACCAAAACCAGCCTTCATGCCTCAGACCAGTATGGTGCCTCCCAAAATCCCAGATGGCGAGAAAGTGGACTTTGATGATATCCACCGCAAGCGTATGGAGAAGGACCTGACTGAGCTGCAGACGCTTATCGAGGCCCATTTTGAGAGTCGCaagaaggaagaagaggagctCATTAACCTCACTGATCGTATTGAGAAGCGCAGGTCTGAGAGAGCAGAGCAAGTGAGGATCCGAACGGAGAAAGAAAAGGAGCGTCAGAACAGAATAAACGAGGAAAAGGcaagaaaggaggaagaggaatttAAGAAGAAAGCAGAGGATGACGCCAAGAAAAAAAAGGTCCTCACCAACTTGCAGTTCAGCGGGTACAAGACAGAAAAGAAAGGTGGGCCGAAAAAGAAAACAGAGCGAGAGAAGAAGAGAGCGATCTTAAGTGAACGGCATAAGGAGCTGAATATTGACCATCTCAAAGAGGACAAACTTAGAGAGAAGGCTACTGAACTGTGGAAGTGGATACATCAACTTGAGGCAGAGAAATTTGATCTCCAGTACAAACACTCCCGACAGAAATATGATGTCACCGTACTCAGGAATCGAGTCAGCGATCATCAGAAAGTTACCAAGGGGACCAGGAGCAAACGGGGCTTGAGGAAATAATGTTGCAGATCAGAATTGAGACCATAGGAGTCCATTCCATTCATACCACTTTGCCCGATGGACATCCTGGTACTCTACAGACAAGGAAGACTTGTGTGACATGTGGAATATTTTTCAGAAAAAATATTTGGAATTAACTTATGTGGATTGTTATTTTTAGGGAAAAATGTATCATAATAAACCAACAAAAATATGTTTGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU690627 lncRNA upstream 23189 40281452 ~ 40281933 (+) True G606502
TU690626 lncRNA upstream 25090 40279722 ~ 40280032 (+) True G606501
TU690613 lncRNA upstream 46890 40257883 ~ 40258232 (+) True G606488
TU690608 lncRNA upstream 55057 40249864 ~ 40250065 (+) True G606483
TU690596 lncRNA upstream 71761 40233053 ~ 40233361 (+) True G606471
TU690801 lncRNA downstream 36849 40351296 ~ 40351759 (+) True G606657
TU690815 lncRNA downstream 44378 40358825 ~ 40360516 (+) True G606670
TU690847 lncRNA downstream 100293 40414740 ~ 40417069 (+) True G606700
TU690853 lncRNA downstream 115170 40429617 ~ 40429902 (+) True G606705
TU690856 lncRNA downstream 118826 40433273 ~ 40433521 (+) True G606708
XM_021608251.2 mRNA upstream 8943 40292040 ~ 40296179 (+) False tnni1b
XM_021608252.2 mRNA upstream 8943 40292042 ~ 40296179 (+) False tnni1b
XM_021608253.2 mRNA upstream 8943 40292064 ~ 40296179 (+) False tnni1b
NM_001185028.1 mRNA upstream 9708 40293428 ~ 40295414 (+) True tnni1b
XM_021609219.2 mRNA upstream 17719 40283553 ~ 40287403 (+) True csrp1b
XR_002474163.2 mRNA downstream 124432 40438879 ~ 40457742 (+) False LOC110527751
XM_021609249.2 mRNA downstream 159319 40473766 ~ 40481140 (+) True LOC110527752
XM_021609250.2 mRNA downstream 179206 40493653 ~ 40506197 (+) False LOC110527753
XM_036983248.1 mRNA downstream 185003 40499450 ~ 40506453 (+) True LOC110527753
XM_021608267.2 mRNA downstream 368559 40683006 ~ 40707849 (+) False ngfb
TU690594 other upstream 73897 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 80951 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 98225 40206569 ~ 40206897 (+) True G606452
TU690507 other upstream 170672 40126534 ~ 40134450 (+) False G606400
TU688229 other upstream 1713828 38584474 ~ 38591294 (+) False G604258
TU690810 other downstream 124653 40439100 ~ 40440632 (+) True LOC110527751
TU691186 other downstream 319734 40634181 ~ 40634439 (+) True G606977
TU692153 other downstream 1148377 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 1512764 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 2506509 42820956 ~ 42821245 (+) True G609436

Expression Profile