RNA id: XM_036983241.1


Basic Information

Item Value
RNA id XM_036983241.1
length 3091
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC110527748
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40418035 ~ 40439054 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTCTGTAGACAATCATCTTAGTGAAGTGGTCATATGACCAGCCCACATAGCCAGGATCAGTATGAACCCCTGTGGGCAGTCATACAGTGGTGGGCTAAGGGGAGACCACACTGACCACAGCACAGAGCACATCCAATGATCAGCATCTACTTGGAGCCAGTCAAAGAACAACCATCCACTCCTCGAACACAACCACTTTCCTTCTATGATTCCTACCCCTCTCCTCAGGACACTCATGCCTCTCCGGAAGGAAACCCTCAGAGACGTCTGGACAGACGACCGGTCTCAAGAAAGTCAAGATTTATCCACTCCACATAAGCCAAAGAAGAAGGCCGAGTCAGCCAACCCAGCCACCAATGGTGCCGATGCCAAGCCCAAAAAGAGCAAGAACAAGAAGAGCGAAGAGCTGTCTGGAGAAGAGAATCCTGCTGTTCAAAGTGGGAAAAAGGTCAAGAAAAAGAAACCAGACGGAGaaaaaacagaaaaggaaaaagtgaaagggaaagagaaagacgagccaaagaagaaaacaaaaagtgTGCCAAAGAAAAAGAAAGGTTCAGATACAGAAGAAGATGATGGGGAAGAGACTCCACAAAAGAAGGTAAAGAAAAAGACCACAAAAGAAGGTTCTGACAAAGATGGCATGGAGAAGAAATCCAAAGCGAAAGATGACAAAGAGTATGACAAAAAAACGAAGAAAGACACCAAGAAAAAGGAACCGGCTTCTCTGTTCTGTGTAAATGGAGATAAGGATAAGTCAGACTCCAAGAGCAAGAAGAAAGCAGCCAAATCTGATAGTGATGACAGTGAACCAGAAACCAAGTCCAGCAAGTCAAAATCAAAAAAGAAGGAGAACGCCTGCCCGGCATCCATGTTCGCAGCAGGGGGAGACAAGGACAAGGACAAGGGTAAAGACAAGAACAAAGACAAGAAGAAAAAGACAGCCAAAGCATCAGAGAGTGACGATTCTGACTCTGAGGCAGAAAAAGGGACAAAAAagaaaaagggaaaagggaagaagaagaagaagaaggaggagaggcctccatCCCCGGACATTGAGTTTGACAGCCTGGAGGAGTTTGTCCTGCAGCCAGCCCAGCAGGGGGTGACGGTCAAATGCAAAATGACCCGGGACAAGAGGGGCATGGACAAAGGCTTGTACCCTACATATTATCTCCACCTCGACAATGAAAAGAAGGTCTTTCTACTGGCTGGGAGAAAACGAAAGAAAAGCACAACCTCCAATTACCTTATCTCCATTGACCCCACAGACTTGTCTAGGGGTGGAGAAAATTTCATTGGAAAGTTGAGGTCCAATATGATGGGCACTAAGTTCACAGTGTTTGACAATGCTCTGCATCCAGACAGAGCTCTACCAGACATGTCCAATGCTCGCCAAGAACTAGCAGCCATCATTTATGAAACTAATGTCTTGGGAATAAAGGGCCCCAGAAGGTTGACCGTCATCATCCCAGGGATGGGCAAGGACAGTGAACGGGTACCCATCCGACCTCGCAGCGACAACAACGGTTTACTGATGAAGTTCCAGAACAGAAAGATGGACAATCTGATCGAACTCCACAACAAGACCCCCACGTGGAACGACGACACGGCGTCACATGTGCTGAACTTCAACGGCAGGGTCACACAGGCCTCCATCAAGAACTTTCAGATCATCCACAGCAAAGATGAGGCCTATATTGTGATGCAGTTTGGACGAGTAGCAGATGATGCTTTCACTCTGGACTACAGCTACCCCATGTGTGCGGTGCAGGCCTTTGCCATCGCTCTATCCAGCTTTGATGGCAAAATAACCTGTGAATAACAGGAAACCATGGGCCCCTGTGCCGCCTCAAGCTGCTGCAACTCGTTATATTACAGATGCACACTACCAGAAAGAAGAATTTCCTTCACCACTCAACATCAGTGCAAGGTACACAGAAGGATGGACGTCCTAGACGAGATGGGAATCCAAGTGCATTTGATAACACATGGACTGCCTTCTGGGATTGTTTGGTTTGTTTGCGTCTCatgcacaggaggctgctgaggggagggcggctcataataatggccctGAACTGAGCTGACGGAATGGCATcttgaagacagcttggctgtcgaaacgttggtaattaaatttttgcatctgagctcctagagtgtgcggctctcttttattttcaggaatggcatcaaacacctggaaaccatgtgtttgataccactccactaattccactccagccattaccacgagcccgtcctcccaaatgaaggcgccaccaacctcctgtggtatcaTGATAATGATAATCATAAACTTTTCTGGGAACAACGTTACTTTTTCCATAGGAGATCCTTGCTGATGCTGCATGCATGCAAGGCTGAGCACTTGAGATGTGGTGTGCTTTGGCATTACACCATTTCAGTTTCAGGGGATGCAGACCAATTGGGGAATGAAAGTAACATCTGAAGACTGAGAGCCTATCTCCCTCCCATCTACATCAAGGATTTTATAGTATAGTACATGTCCAATTCATTCTGTTGTATTTCGTTTGGAAGGCAAATCCGATCATGTGTAATCTCAAGTCCATTGGTAGAAAAACTGCGTGTCTACGTGGACTTATTTAGGCATACTTGTTCTTATTATCAGTAGGGTTACGTTTGTTTCCATGCATTGTGTTATGTCAACATTATgaaattgaccttattttagctcAATGTGTGCTTATCGGATATCTACTGTATGTTCATGTTAGGGATTTTTATCACCAATATTATGACCTCCTTAAACAAATTAGAGGTTTCATTGTGAACACTTAAGAGGCAGTGGCACAAGGCAATATGCTTGTACCAATTGACTGTCGACAGTCACAAGTATTTTACTAATCTCATTTGCTGTTCTCATTCCACTCAAGCAACAATTTTGTTGTTCTGATACCTGCCTTTTTATGTTCtctctatgtacagttgaagttggaagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtaaaaaatccctgttttatgtcagttaggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU691017 lncRNA downstream 7723 40409961 ~ 40410312 (-) True G606821
TU691014 lncRNA downstream 9717 40408047 ~ 40408318 (-) True G606818
TU691013 lncRNA downstream 10383 40407442 ~ 40407652 (-) True G606817
TU690746 lncRNA downstream 130637 40284233 ~ 40287398 (-) True G606613
TU690741 lncRNA downstream 138004 40279627 ~ 40280031 (-) True G606610
TU691024 lncRNA upstream 1220 40429468 ~ 40429703 (-) True G606828
TU691029 lncRNA upstream 6532 40434780 ~ 40435070 (-) True G606833
TU690993 lncRNA upstream 12696 40440944 ~ 40441262 (-) True G606797
TU691031 lncRNA upstream 13600 40441848 ~ 40443196 (-) True G606835
TU691032 lncRNA upstream 15006 40443254 ~ 40443607 (-) True G606836
XM_021609230.2 mRNA downstream 12234 40365303 ~ 40405801 (-) False LOC110527745
XM_021609248.2 mRNA upstream 24137 40452385 ~ 40454645 (-) True LOC110527750
XM_021609251.2 mRNA upstream 79494 40507742 ~ 40513295 (-) True LOC110527754
XM_021609252.2 mRNA upstream 132110 40560358 ~ 40562952 (-) False LOC110527755
XM_036984481.1 mRNA upstream 132110 40560358 ~ 40562952 (-) False LOC110527755
XM_021609253.2 mRNA upstream 157660 40585908 ~ 40596388 (-) False LOC110527756
TU690660 other downstream 193868 40223555 ~ 40224167 (-) True LOC110527741
TU690234 other downstream 576704 39838891 ~ 39841331 (-) True G606135
TU689636 other downstream 1349207 39063005 ~ 39068828 (-) True LOC110527723
TU688474 other downstream 1778635 38602330 ~ 38639400 (-) True G604484
TU688480 other downstream 1820516 38590868 ~ 38597519 (-) True G604485
TU691182 other upstream 201001 40629249 ~ 40629880 (-) True G606973
TU692184 other upstream 728422 41156670 ~ 41348899 (-) False LOC110527764
TU692185 other upstream 728422 41156670 ~ 41348899 (-) False LOC110527764
TU692186 other upstream 728422 41156670 ~ 41348899 (-) False LOC110527764
TU692187 other upstream 728422 41156670 ~ 41348899 (-) False LOC110527764

Expression Profile