RNA id: XM_021609258.2


Basic Information

Item Value
RNA id XM_021609258.2
length 3338
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC110527761
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40768279 ~ 40778071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTACGGTGAATTCTGTATCTGTTGTCCTTGGGTGATGATTCATTAAAGTGGTATTTATGGTTAACCAGCACCAATAGTGTGTTCTTCCATGCTTTTGTCAGGACAAGGGGAGCACACAAGGAAGTCTTGCTAAACGGGAGGATGCTTTGCTAGTAGTTTTCAGCGTTGTTCAACATCAACAAGTAAGGAAGACATAGGAATATTGGACATTAGTTCTTGGGATTCTAGGATGTTTGTAGAAGGACATTTCTTTCCATTATGGATGTCTATTGTAAGTGTTAAATAACTGCAATAATTTCAACACTTAATCTGTATTGATACTAGCATTCCTGAGGTGCATATCTAGTTGACTGAGAATTTATGTGCTATTGGTTTGTTCTCTTGGAAGACTGAAAAACGGTTGGCCTCAATTTTAGTAAAAGTGTTTTATTTTGACATTCTTGATTTAACTTTGTGAAAGTTAAATAATTCTGTAATTCATATAACATTCATTTGATCGAGTTTTAAATGGGAAAAATTGTGTGCGTTGGAAAGAAAGGAAATTAAATATTAGCAACATTGCCTAACAATCAAACTGTAAGATCTAAGTTATGAGCAGTGGGTGAAGGTGTTTAGATAGTAAAGGTAAGATAATTGTCGGTCCCTGCCTGAGAGATCTCTTCTGGGCTCATTAACCATGACGATGGGCACAGGGGGCCCCGTGGCCTCGTTCTCTGTGTGGGACTATGTGGTATTTGTGGGCACAGTCCTGGGGGCAGCTGGCATTGGCCTGTTCCAAGCCATCCGGGGCCGCAAGAACAACAACAGCGGTGAGTTCCTGCTGGGGGGCCGTCAGATGACAGCGGTGCCCGTTGCCATGTCCCTCACTGCCAGCTTCATGTCTGGCATCACCGTGATAGGCACACCAGCCGAAGCCTATCGGTTTGGGGCGGACTACTGGATCTTTGCCATCTCCTATGCCATCATGTCCATCATCACCGCCGAGATATTTGTCCCTCTCTTCTACCGCCTGGGCATCACCAGCACCTATGAGTATCTGGAGATGCGCTTTAATAAGTTGATTCGGGTGATCGGGACATCCATGTACATCACACAAACGGCCCTGTACACTGGTATGGTCATATATGCGCCAGCTCTCGCACTCAATCAAATCACAGGAATGAACCTCTGGGGAGTGCTGGTGGCCACTGGGGTGGTGTGCATCCTCTACTGTACCCTGGGAGGTCTGAAAGCGGTGATATGGACAGACGTGTTTCAGATGGTGATCATGTTAGCAGGTTTCGTGGCTGTCATCGCAAGGGGGGCTGTCATCCAGGGGGGCCTGGGGAAGATCTGGGACGACTGCTACCAGGGAGGCAGGCTCAGCGCGTTTGATTTTGATCCAGACCCTTTGAAGCGTCACACGTTCTGGACGATCGTGGTTGGTGGCAGTGTAATGTGGGTGTCCATTTACTCCATCAACCAGTCACAGGTGCAGCGTTACATCTCTTGCAAAACCCTAACCCAAGCCAAACTGTCACTGTATGGGAATATAATTGGTCTCTGGTTGACTGTGAGCTTAGCAGTGTTCTCCGGCCTCACCATGTACTCCATTTACAAAGACTGTGATCCATTCACTAACGGTGATGTAGGGGCAGTTGATCAGCTGCTTCCTTACCTGGTGATGGACATTCTGGCAGCCTATCCTGGAGTCCCTGGATTGTTTGTGTCTGCAGCATACAGTGGCACCCTAAGTACTGTGTCCTCCAGCATCAATGCGCTGGTGGCTGTCACTGTGGAGGACTTTGTCAGGCCAGTGTGGAAAAACCTGACAGAGAAACAGGTGTCCTGGATCAACATGGGCCTCAGTATTTTCTTCGGGTTTTTGTGCATTGGGATGGCTGCAATAGCTTCACTGATGGGAAGCATTTTGCAGGCAGCACTGTCCATATTTGGAATGATAAGTGGACCTCTTCTTGGACTTTACGTACTAGGCATGTTCTGGCGCACAGCAAACTCAACAGGGGGACTCACAGGACTGATTGTGGGCCTTGTTATTACCCTGTGGGTAGGGATTGGAGCGCAGATATACCCACCCCTAGCTGATAAGACCAACCCCCTGCCAATCAGTGTGGCAGGCTGTAACCGCACACAGGACCTGAACTACACCACCCTGGCCCCATGGACCGGGGCAGTAACACCGACCCCTCTGCCTGATGACCGGCCAGCTCTGGCAGACTCATGGTACTCCCTGTCCTACTTGTACTTCTGTCTCCTGGGCAGTCTGGTGACTGTGATTGTGGGCCTGGTGGTAAGCGCTATCACAGGTGGTTGCAAGCAGGAGAATCTACGCTTGGATCTCTTTGTAAGGAGACGTGATCTATTCTGCGCTGGCTGTGGCAAGGACTCAGAGGCATTAGACTCTGAGATAAATGAAAAGGCTGGATCGGAGCTGAAGAATGGATCAAACAACGCTGGATTCAAAGACTCTCAGTTTAACATTGTGGATAAGGATGTGGAAAAGGTCACTAAaatgtgatgctgccaccaagcTAAATACACTCTGTCAACTGGAGTGCTCCAAGAGAACGATTTGTCCTCTCACATTTCCATTCTAGTTTTATTGTAATGAAATTCGTTGCTAAGAAAGGAAGCCCATGTGTGTAATTACGCAGATGAAGTCCCTAATCAGCAAATGTGTGTGAAGAACAAGAACAAAGGACTAGCATTACTAACCCCATATTCATCAGGGTCAATATGAACCGTGGGTTTGACAAAACAGTCAtgttatttttatgtatttattttaactCAGCTGGGCTTTCAATTTCTTGCTGTCGAGAGTTGTAATAGTAAAGAATGCACAAGGCACCAATTcaaaatgtgtttgtgtatgggCAGTTTTCCTCTTGCTATGTCACTCACTGACAGACTTTAAAGAGCTATTTATAACCTGTTCAAAATGTCCAGTTGATCAACTAGGTAGCCTATGGTAGCTAGGTAGGTATGTTAGGCTAACCAGCTATCTTATAGTTGTAGTTATCATGGCCAGATTAATTGATCAGGGACCTCAACCCCAAAGCGGCCTCCTTTGTTTTTGTTGAGTAACTAAAGTATCATGTGAACACACATATGACATGGCAAAATGTCTATAATtgaaggaaattagctttaaaactgtaacaacaacaacaacaaaaaaaattgcctacaagaggggtgtgaacagtttggggtcGATGGGTTGTGAGGTGGTGGTTTATGACTTTTCAACATTGTGTTAAGATTATAGATAAAATAGGTTTAATTAAAAATACATAAATTAAAATGTACATCTAACCTACTTGTCACTACAAA

Function

GO: NA

KEGG:

id description
K14388 SLC5A8_12, SMCT; solute carrier family 5 (sodium-coupled monocarboxylate transporter), member 8/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU691249 lncRNA upstream 55317 40712739 ~ 40712962 (+) True G607034
TU691199 lncRNA upstream 121172 40646869 ~ 40647107 (+) True G606990
TU691193 lncRNA upstream 129513 40638494 ~ 40638766 (+) True G606984
TU691181 lncRNA upstream 138400 40629533 ~ 40629879 (+) True G606972
TU691180 lncRNA upstream 139775 40628233 ~ 40628504 (+) True G606971
TU691240 lncRNA downstream 8159 40786230 ~ 40787999 (+) True G607025
TU691310 lncRNA downstream 23015 40801086 ~ 40804767 (+) True G607093
TU691323 lncRNA downstream 46368 40824439 ~ 40824648 (+) True G607106
TU691324 lncRNA downstream 46880 40824951 ~ 40825157 (+) True G607107
TU691328 lncRNA downstream 50069 40828140 ~ 40828444 (+) True G607111
XM_021609256.2 mRNA upstream 34695 40715927 ~ 40733584 (+) True tspan2a
XM_021608267.2 mRNA upstream 60430 40683006 ~ 40707849 (+) False ngfb
XM_036983249.1 mRNA upstream 60430 40699039 ~ 40707849 (+) True ngfb
XM_036983248.1 mRNA upstream 261826 40499450 ~ 40506453 (+) True LOC110527753
XM_021609250.2 mRNA upstream 262082 40493653 ~ 40506197 (+) False LOC110527753
XM_021609260.2 mRNA downstream 671 40778742 ~ 40783217 (+) False si:ch211-105j21.9
XM_036983251.1 mRNA downstream 2378 40780449 ~ 40783217 (+) False si:ch211-105j21.9
XM_036983250.1 mRNA downstream 2393 40780464 ~ 40783217 (+) False si:ch211-105j21.9
XM_021609259.2 mRNA downstream 2694 40780765 ~ 40783217 (+) False si:ch211-105j21.9
XM_021609261.2 mRNA downstream 2694 40780765 ~ 40783217 (+) True si:ch211-105j21.9
TU691186 other upstream 133840 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 327647 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 537054 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 544108 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 561382 40206569 ~ 40206897 (+) True G606452
TU692153 other downstream 684753 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 1049140 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 2042885 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 2632320 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 2805949 43584020 ~ 43584896 (+) True G610563

Expression Profile