RNA id: XM_021609261.2


Basic Information

Item Value
RNA id XM_021609261.2
length 1350
RNA type mRNA
GC content 0.42
exon number 4
gene id si:ch211-105j21.9
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40778742 ~ 40783217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGTGCTAATTTTGCGATTAAAGCAAGAGCTGCATGTGGCCACCTGTGCACatttttgttcatatcctttgctagtttgttattagcccagttatagataatgTGTAGTCAGCAGCAGGGGAGTGATTTTTTTCCTACAAGAGCCCAACATGTGTACCTTttctagacatttttgaaaagtgagtcagGACCAAAGAGAACATGAGGGCCATTGATCACAGACTTTCTCTACCCCTGGCAAGTTTTATTATGGCCATTTCCTTGACTACAACTACAACCCTGACAAGCTCTTCTGAGAGAGGAAATAATGCCACTGTCGCAAATATCCGTTTGGTTACTGCAATCACAGAGACAATGGCGCCAAACCAGACCTACACCACAGCCATGTCAACTCCTTCAAATGTCACTGTTGACGGTGCTCTCTCTACTACAAGTTACCATAACTCAAGTCAGAACAGCACTGGAGCAACAACTCACAATGCTGTGCAGGACAACTCAACAACCACAACAGCACTGGCTGAGAGCTCAAACACAACCACTGAGTCAACACCATCAGCTTTGGCCCCTACAGCTAATGCTACATCTGCAGCCATTACAGTCCCAGGTATTGTCCCCTCCACTGCACCAACCACCCAAGCAGCCAAGACCACTGAAAACCAAAACAGTACATCAAATATCCCACCACAACAATCCACTAAGAATCTTCCTCAAACCACAAATGCTGCCATTTCGATGACAACCGCAACACATAATGTGACACAAGGTTTTGGACTAGACAATTCAGAAAAAGGCATGACGGTTTTCTTCAGTGTTGTGCTTGGGGTGTTTGTTTTGGGAATATTTATGTACATGTTGAATAGATGGAACCAGATGAGGCAATACTCACACCGACCTCTCTATAACAACTCTGAGGCCGAAGTGGGTGGATCCCTAGCAGCAGACGACACACTTGTAATTTCAGGAGGACTCTACGATGGTTCACAAATCTATAATCCTACTATGACAACTACTGATATGACGGAGGATGAGTTCAATTTTGATAACCGTCTACATGTGTCCCAGCGATCACAGTTCCGCCTGGAGTTCTTAACTGAAGAACGAGAGAACTCCCCAGGCTATGAGGCCTCTACCTTTCATACTTTTCAGCCAATTGATGATGATTTTTAATGTCAAATCTagcttatttttgttttttttaactccagtttgtaaatgatgtccaaACTAGCCAATAGGCTTTTTTTTAACATCACTTTAACAATTGCATTGTttatactgttgaagtcggaagtttacatacacttaggttggagtcattaaaaccttttcaaccactccacaaatttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU691249 lncRNA upstream 67803 40712739 ~ 40712962 (+) True G607034
TU691199 lncRNA upstream 133658 40646869 ~ 40647107 (+) True G606990
TU691193 lncRNA upstream 141999 40638494 ~ 40638766 (+) True G606984
TU691181 lncRNA upstream 150886 40629533 ~ 40629879 (+) True G606972
TU691180 lncRNA upstream 152261 40628233 ~ 40628504 (+) True G606971
TU691240 lncRNA downstream 3013 40786230 ~ 40787999 (+) True G607025
TU691310 lncRNA downstream 17869 40801086 ~ 40804767 (+) True G607093
TU691323 lncRNA downstream 41222 40824439 ~ 40824648 (+) True G607106
TU691324 lncRNA downstream 41734 40824951 ~ 40825157 (+) True G607107
TU691328 lncRNA downstream 44923 40828140 ~ 40828444 (+) True G607111
XM_021609258.2 mRNA upstream 2694 40768279 ~ 40778071 (+) True LOC110527761
XM_021609256.2 mRNA upstream 47181 40715927 ~ 40733584 (+) True tspan2a
XM_021608267.2 mRNA upstream 72916 40683006 ~ 40707849 (+) False ngfb
XM_036983249.1 mRNA upstream 72916 40699039 ~ 40707849 (+) True ngfb
XM_036983248.1 mRNA upstream 274312 40499450 ~ 40506453 (+) True LOC110527753
XM_021609266.2 mRNA downstream 577972 41361189 ~ 41411312 (+) True ppm1j
XM_021609267.2 mRNA downstream 631186 41414403 ~ 41439948 (+) True rhoca
XM_036983254.1 mRNA downstream 702471 41485688 ~ 41497176 (+) False st7l
XM_021609270.2 mRNA downstream 702471 41485688 ~ 41503766 (+) False st7l
XM_021609271.2 mRNA downstream 702471 41485688 ~ 41503766 (+) True st7l
TU691186 other upstream 146326 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 340133 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 549540 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 556594 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 573868 40206569 ~ 40206897 (+) True G606452
TU692153 other downstream 679607 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 1043994 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 2037739 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 2627174 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 2800803 43584020 ~ 43584896 (+) True G610563

Expression Profile