RNA id: XM_021609262.2


Basic Information

Item Value
RNA id XM_021609262.2
length 2265
RNA type mRNA
GC content 0.49
exon number 5
gene id slc16a1a
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40804053 ~ 40816448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAACAACCAATAAGAGGCTGGCTGGACTGACCTCACCAGTTCGCACTCTAGTGCCTTGGCCGGCCCAGCTGTTTGATCTGGCCACTGAATGAACCAAACTTTTGTCCACTTCCCTTCCACTTCACAGACTAGCCCTTATGCTGACTCTGAAGTATTAATTATAGTTTGGGACTGTCTCTCAGACTTTCTGGACCAGACTTCTGCAGAGGTCTCTGCTTCTTCCACAGATCCACTTAGGATATAGTACAGTATGCAGTCTGTCCTGCGCTGAAGTGCCTCGGTGAGAGCTCCCCATCTCAGCCTGCAGAGCTCATCTGGATTTAGAAAGATCTGCTGGCAAGGTGCCCATTGCTGTGTAGGGTCCTGTGCAGAGGAGCTTGGTGAGCAGCAGCCATGCCGCCTGCCACTGGAGGACCCCAGGGGTACACCCCTCCAGaggggggctggggctgggcggTGGTGGTGGGAGCCTTCATCTCCATCGGCTTCTCCTTTGCCTTTCCCAAGTCCATCACTGTCTTCTTCAAGGAGATCGAGGTCATCTTCGACTGCTCCAGCAGCCAGGTGTCCTGGATCTCCTCCATCATGCTGGCAGTCATGTACGCAGGAGgTCCTATCAGCAGTATCCTGGTTAATAAGTATGGGAGTCGTCCAGTCATGATGTGTGGAGGATTACTGTCTGGGTGTGGACTGATATCTGCCTCCTTCTGTAACTCAGTGGAAGGACTGTACTTCTGTGTGGGAGTGGTCGGAGGCTTGGGACTGGCATTCAATCTGAACCCAGCCCTTACTATGATTGGGAAGTACTTCTACCATAAGCGGCCCATCGCCAATGGAATCGCCATGGCAGGCAGCCCGGTGTTCCTGTCCACCCTGGCCCCTCTCAACAGTTGGTTATTTGACCAGTTTGGCTGGAGGGGCAGCTTCCTGATCCTGGGAGGCCTGCTGTTCAACTGCTGCGTGGCTGGCTCTCTCATGAGACCCATCGAAACCAAACCACAGTCTTCCTTGAAAAGTGAAGATGTTGCCAAAGAGAGTATGACATGTGGGCAGAAGTGCAACACTTTTATTGACCTCTCGCTGTTCAAACACCGGGGCTTCGTGCTCTACCTCATGGGTAACGTCATCATGTTCTTTGGTCTCTTCTCCCCACTGGTGTTCCTTAGTAACTTCGCCAAGAGCAGGGACATCCCCAAAGAGAAGGCAGCCTTCCTGCTGTCTATTCTGGCCTTTGTGGACATGGTGGCCCGGCCCTCCATGGGCATTGTGGCCAATACCAAGTGGATACGACCCAGGGTGCAGTACTTCTTTGCCTGCTCTGTGCTATTGAATGGCGTGTGCCACATCCTGGCCCCCATCTCCGTGGACTACACAGGCTTTGTTATCTACGCCATCATCTTTGGCTTTGCCTTCGGCTGGCTGAGTGCGGTGCTGTTTGAGACGCTCATGGACCTGGTGGGAACGCAGCGCTTCTCCAGTGCAGTGGGACTGGTCACCATCGTGGAGTGTGGGCCTGTCTTGTTAGGACCCCCTTTACTAGGTAAATTCAAAGACATTTACAACGACTACCAATACACCTACCAGAGCTGTGGGGTGATCCTTATTATTGCCAGTGTGTTCCTGTTCGTGGGGATGGGTATCAACTACCGGTTGTTGCACAaagagaaaaaggaggaggaaaggaaggctAATCCGGAGGGAAAAGAAGAAGAGTCCAACAAGGACAATGCTGCCAAAGAAGCCAGCAACGACAGGTTGAGAGCATTTGATGAGGCAAAAACTGCGGAAGACACAGTCTAACTCTCATTACCGTGTGAATGTGTGAATTTGATGTCGTCGCAATACAGTCAATTAAGATAATGTAGACATCAAATTCATTCAGTTCAAGTCCTTGCCATCTAGCAGATTTCATGTAAAGATAATTCTCAGCCCCATTTCCACTTCTGTCATTGAATAATGTATTATTAGTATAATATGACAGGAGCAAGATACACTTGTGTATGATATAGGCATGCAATCTCTACTGACATGTACTGCCACCCTGCAAAAATATACTCTATGTTATCAATCTGGACTCCAGATGGTCCATTTTCTGCATAAGTGTTGTGATATATTTTTGAATATTATTAGATACAGGTCATTTGTTTATACTGTGTTTGGAATTTCATAAATGCACTTTCTATAACTGCAATTTATTATTCTGTGAAAAAAAATGGAACTGCTATAACTTTTAGAACCTTTAATAAATCACTGTAACATTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU691442 lncRNA downstream 16113 40782789 ~ 40787940 (-) True G607218
TU691437 lncRNA downstream 21767 40773270 ~ 40782286 (-) True G607213
TU691162 lncRNA downstream 186805 40617045 ~ 40617248 (-) True G606953
TU691086 lncRNA downstream 193377 40604339 ~ 40610676 (-) True LOC110527758
TU691085 lncRNA downstream 216514 40586125 ~ 40587539 (-) True LOC110527756
TU691475 lncRNA upstream 8603 40825051 ~ 40825260 (-) True G607250
TU691476 lncRNA upstream 8870 40825318 ~ 40825618 (-) True G607251
TU691481 lncRNA upstream 17092 40833540 ~ 40833746 (-) True G607256
TU691485 lncRNA upstream 24473 40840921 ~ 40841120 (-) True G607260
TU691503 lncRNA upstream 38233 40854681 ~ 40854936 (-) True G607278
NM_001124543.1 mRNA downstream 47834 40754249 ~ 40756219 (-) True tshba
XM_021609255.2 mRNA downstream 54790 40733892 ~ 40749263 (-) True slc25a55a
XM_021609254.2 mRNA downstream 192004 40603451 ~ 40612049 (-) False LOC110527758
XM_021609253.2 mRNA downstream 207665 40585908 ~ 40596388 (-) False LOC110527756
XM_021609252.2 mRNA downstream 241101 40560358 ~ 40562952 (-) False LOC110527755
XM_021609264.2 mRNA upstream 340217 41156665 ~ 41348913 (-) False LOC110527764
XM_021609265.2 mRNA upstream 341115 41157563 ~ 41348915 (-) False LOC110527764
XM_021609268.2 mRNA upstream 628502 41444950 ~ 41467330 (-) False mov10a
XM_036983253.1 mRNA upstream 628502 41444950 ~ 41467330 (-) True mov10a
XM_021609272.2 mRNA upstream 653118 41469566 ~ 41485470 (-) True capza1a
TU691182 other downstream 174173 40629249 ~ 40629880 (-) True G606973
TU690660 other downstream 579886 40223555 ~ 40224167 (-) True LOC110527741
TU690234 other downstream 962722 39838891 ~ 39841331 (-) True G606135
TU689636 other downstream 1735225 39063005 ~ 39068828 (-) True LOC110527723
TU688474 other downstream 2164653 38602330 ~ 38639400 (-) True G604484
TU692184 other upstream 340222 41156670 ~ 41348899 (-) False LOC110527764
TU692185 other upstream 340222 41156670 ~ 41348899 (-) False LOC110527764
TU692186 other upstream 340222 41156670 ~ 41348899 (-) False LOC110527764
TU692187 other upstream 340222 41156670 ~ 41348899 (-) False LOC110527764
TU692189 other upstream 340222 41156670 ~ 41348899 (-) True LOC110527764

Expression Profile