RNA id: TU692189


Basic Information

Item Value
RNA id TU692189
length 1923
RNA type TUCP
GC content 0.43
exon number 6
gene id LOC110527764
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41156665 ~ 41348915 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATCTCAAATGCCTCGTCTGGAACGGCGAAGAAACACACCCACAACAAGTTAACAAAACAATACTGGGTGAATTGCAACAATACTAATATGTTCTGGAGAAACAATGATTGACTATACGTTTTTGCTTCCAAGCTGTCGCCCTTTTGCGGTTGGGAAGTTCTGAAAAAGCGCAAAAGGACCTGGAACTTTAGAAGATCTCCAGTTGCTTTCCAGTCTACTGATCAAGCCGGGGGTCCGGTCGAGCTTTAAAGTCTATGCAATACATTTTAGACTTCTCTCGACTCGGGGATTTGTGCGCTCGGAAAGCTTGATTTCTACATAATTGTCCTAGGTTATGTTTTTGTCGTGGTGGGCACCTTCATGCGATAAGGATATGGTATTTCTTTAACATTATCCTGGTTTTGTTTTTGACAATGGAAAGCAAATGAAAGGGGAATTTCACGGGATTAATTGACAGCACAACGACAGTATGCGGGAGAGAGACCTACGGAGAGTGTGCAAAAGGGGGCTGCTGCTGGCCGtctgtgtggtgtctctctgggGACAGCTGACCCTTGCATCGTCACACAGAAGTCACATAGtgcatgtcaaagcaggGACCTGTGAAGTGATCGCCGCCCACCGCTGCTGCAACAAGAACAAGATTGAGGAGAGATCCCAGACGGTCAAATGTTCCTGCTTCCCCGGACAGGTTGCCGGGACAACAAGAGCGGCTCCATCTTGTGTGGACGCATCCATAGTTGCACAGAAGTGGTGGTGCCAGATGCATCCATGTATGGATGGGGAGGAGTGTAAAGTGTTGCCTGACCTGAAAGGCTGGAGCTGCAGTACAGGAAACAAAGTAAAGACGACGAAGGTGGGTGCATAATGTCACACGATAGTGCGGTCTGTCCTGGATCTGAAGACTTGGCATCAGTCATCTCTTCCTTGACAGAAACCACAGGGACTTCTTGGATGTGAAGACTATGTATTGAAGGATTGTGGGATGGAACCAGGGACCAATAAGGGAAAAAAAAGGAAACACTGAAATTCCACTGTATGGATGCAGAGCAGAGACTTGACTTGGAGATCCCATAGAACCACCTATCCAGACTACTGATTAGATCCCATAGAACCACCTATCCAGACTAATGGACTACTGATTAGATCTCATAGAACCACCTATCCAGACACTGGACTACTGATTAGAACCACCTATCCAGACTACTGGACTACTGATTAGATCCCATAGAACCACCTATCCAGACTACTGGACTACTGATCAGATCCCATAGAACCACCTATCCAGACAACTGGACTGCTGATTAGATCCCATAGAACCACCTTATCCAGACTACTGGACTACTGATTAGATCCAATTCCTAGCCATTATTGTTTATGTTTTTTCCTCCAATGAACTGCTACAGTAGGAGATCCAAACCTGCAAGGTATTTATTCAGTAAAAACAAAAACTGTGGATTATGCAAGCAAGATAAACCTTAATGCGAAACATGTGACGTGACATTTTCAAATATTTTTCCTCTTTTTGCCACAGAGAAGCTCAATGACTCCAAAACCAAGTGTTTGTGTTCGAGATTTAGATCATAAGCATATCCATTTATTTTTAACCGTATGAAGCAGACATCTCTTCTTTTTAaggtttttgattttttttaaagcattaaGTGTTTGGTTTTAGTAATTCTGTTGGACTGTCAGGTCTGCTTTTGAAGACTTGAGACATCAAAGAAGATGCCAGAGTGAAAAATAGTACTAACTACTATGTTGCAGTGCTTGAATTAAAGGCACCATGGTTTCAACAAACCAATTAAAATGACATTAAGCTGAACTCCAACTGTTTTAATATCTGTTTTTAATAGCCTGGTGACCAACATTGAGTAAAAGTGTCAGTATTATCTCAATAAACCTATGTCAAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU691882 lncRNA downstream 32867 41123601 ~ 41123803 (-) True G607650
TU691845 lncRNA downstream 57003 41099379 ~ 41099667 (-) True G607615
TU691798 lncRNA downstream 93513 41062908 ~ 41063157 (-) True G607568
TU691784 lncRNA downstream 103808 41052620 ~ 41052862 (-) True G607554
TU691732 lncRNA downstream 139415 41017053 ~ 41017255 (-) True G607502
TU692336 lncRNA upstream 65515 41414414 ~ 41439945 (-) True G608069
TU692401 lncRNA upstream 93520 41442419 ~ 41442654 (-) True G608127
TU692402 lncRNA upstream 94639 41443538 ~ 41444126 (-) True G608128
TU692442 lncRNA upstream 157950 41506849 ~ 41507049 (-) True G608167
TU692521 lncRNA upstream 160569 41509468 ~ 41509707 (-) True G608242
XM_021609262.2 mRNA downstream 340222 40804053 ~ 40816448 (-) False slc16a1a
XM_021609263.2 mRNA downstream 340222 40804053 ~ 40816448 (-) True slc16a1a
NM_001124543.1 mRNA downstream 400451 40754249 ~ 40756219 (-) True tshba
XM_021609255.2 mRNA downstream 407407 40733892 ~ 40749263 (-) True slc25a55a
XM_021609254.2 mRNA downstream 544621 40603451 ~ 40612049 (-) False LOC110527758
XM_021609268.2 mRNA upstream 96051 41444950 ~ 41467330 (-) False mov10a
XM_036983253.1 mRNA upstream 96051 41444950 ~ 41467330 (-) True mov10a
XM_021609272.2 mRNA upstream 120667 41469566 ~ 41485470 (-) True capza1a
XM_021609273.2 mRNA upstream 171329 41520228 ~ 41536102 (-) False wnt2ba
XM_021609274.2 mRNA upstream 171329 41520228 ~ 41536290 (-) True wnt2ba
TU691182 other downstream 526790 40629249 ~ 40629880 (-) True G606973
TU690660 other downstream 932503 40223555 ~ 40224167 (-) True LOC110527741
TU690234 other downstream 1315339 39838891 ~ 39841331 (-) True G606135
TU689636 other downstream 2087842 39063005 ~ 39068828 (-) True LOC110527723
TU688474 other downstream 2517270 38602330 ~ 38639400 (-) True G604484
TU693231 other upstream 595672 41944571 ~ 41951244 (-) True G608888
TU693245 other upstream 619670 41968569 ~ 42025704 (-) True G608900
TU694523 other upstream 1486848 42835747 ~ 42836069 (-) True G610047
TU694690 other upstream 1758228 43107127 ~ 43162969 (-) False G610182
TU694686 other upstream 1759709 43108608 ~ 43112038 (-) False G610182

Expression Profile