RNA id: XM_021609267.2


Basic Information

Item Value
RNA id XM_021609267.2
length 4021
RNA type mRNA
GC content 0.45
exon number 5
gene id rhoca
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41414403 ~ 41439948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATAGAGATTAAGCGCCACCACTGCCTTTCCTGATCGGTGGGAGGATCCTATGTTTGTCTGTCCTGTTTCTTAGCACCCTCTATGTAGGCTAATTTACCGAATACTGCAGCAAGGGTGTCACGATCCAGAGAGAAGGAAGGCAAATCGGGAGTAAAATCTGAACAGCGGCCAGAAGAGAGtAATGGCAGCCATTAGGAAGAAGCTGGTGATCGTAGGGGATGGAGCCTGTGGAAAGACTTGTCTTCTCATCGTCTTCAGTAAAGACCAGTTCCCCGAGGTCTACGTGCCCACAGTGTTCGAGAACTACATCGCTGACATCGAGGTTGATGGCAAACAGGTGGAGCTGGCGCTGTGGGATACAGCCGGCCAGGAGGACTACGACAGGTTGAGGCCTCTCTCCTACCCCGACACTGATGTCATCCTCATGTGCTTCTCTATCGACAGCCCTGACAGTTTAGAAAACATCCCGGAGAAGTGGACCCCTGAGGTGAAGCACTTCTGCCCCAACGTTCCAATCATCCTGGTGGGCAACAAGAAGGACCTGAGGAACGACGAACACACACGGAGGGagctggccaagatgaagcagGAGCCAGTGAAGCCAGAGGAAGGCCGGGACATGGCTAACCGTATCAGTGCCTTTGGCTACCTGGAGTGTTCAGCCAAGACAAAGGATGGCGTGAGGGAGGTTTTTGAGATGGCCACCAGGGCGGCGCTGCAGGTGCGCAAGCGCAAGAAGAGGGGTGCCTGCCTGctgttgtgaggaggaggaagacctcAGTCGTCAACTGACAaaacaacaatatatatatatatatatatatatatatacacgcagGACTGACCTTTTACCAAATGGCATCTTTGTACTGTATCTCATTTCACGCTAAAGAGGTTGGCGGCCGAAAGTGCTGAACGTAAAATAACAAGGAAAAGGACTGGTCTGTAACACAGGTTAGAAATTAGTGTTTAAACTTCTCagctttgtttttgtttgttaagCTTATTCCATGCAATGGGTACACTGTCTTTCGTCTAGTTTTTCCACAGCCgtctttttttccccccctgtCGCTTTTGAGAAGATAATAAATGCACATGTATTTGTATGCAAAAATATTTGGCTGTCCTTCCCTGGGCCTGTACAAACAGTCGGTCAACAGAGCTTGTGTTGTCAACATGCACACTGTTGTAATCAGGACTCACCCAAACTCTTGTTCATTTGTAACCCGTCCTGTCCGCTAGCTTAGATTCTATGGTAAGAGGGTCTACTTTCCAGGGGAGAGGTTTTGCTCTTTAGAACCAGTGCCttttaaaaaaagttatttttCAAGTCCTTGCATACCACTAAGTAATGCTCCTCCTGACCTGTTGGTCAACTCACTAGCAGGGGAGCGGAGGGCCTCCCCACGTTAATTATACACAGTATGTATTGTAATGCAATCTGAGCTTTGCTGCATGTAACCTAGGCTTTGAGGGCTGTCGACAACTAGCCGCAAGAAACAACTTCAAAGTTAATTTTACTTAGGAGAAAGCATCAGCTAGTCCGTATTGACTGAAATCAGTCCCCACCCCCCGGGGGTAGTCGGAGCACCTCATGGCACTGTAACATGACCCTACAGATATGTGTGCAGAGAagtccatcctcccctcaaatAAGGTCTGGATTGAACACCTGTACAGAGATGCTTGAATATCCCACATAAACAGAAGCTAGCATGACTTTAAAGTACCACCACACCAGGACGTGACAAGTTAAAACAGGTGTCGCATGATGATTAGGGGAGCATGGtctacagtagctacagtagGTTTGTATGAGTTGACACAATCCTCTTTTTAGAATGAGAATGCCAATGTATTTTTCACAAGGCTGGAGCTACTGGGGTATGtgggggactgactgactggtggatCCTGCCTCGAGATCCTGTCAGGGTTGACTGGCCTGCGGATTTCCAGTCTGACTGCATTCTGAGGAGCCACATGAGTGTTTTTCAGTGCCTTCTCTTTCCTGGTAACCTGTGCGACTTTAGCGTTCCCTTCCCCGAGAGCCGAGCAGAGACTGGACCGGTTGCTCAATGCCAACACGCCACAGCCAGTCAACTTTGACACCTCTGTCATGTTACACAAAGTTCAACACTCCCAGCACTCACTCACCCAGCCATAAAGAATGTCAGGGGGAAATGATGCTTGACAAATTAAGAGTGTTTTTTTCAAGGTACACTTTGCCATAGCGTTCCGCAAAACATACCTGGTTGAAACCCCAGTTAGAATTTGATCATCCATAGATGAGATCTCTTCAGCCTGGTGGTTGATTGTAATTTCATTTGAGGAAGGAAACTCCCAGTGTGCTTTGCCTGATTTTTCAGGAACTGGTTTATCAATTCTCAGTTTGTTCTGGCTTGGCGCTATTTGACAAGAAGGCAAGACCTGAATTattttttttgagagagagagagacttctgtTGGCTGCCACACaattctctctccctacctgtcGCACAGCTAAAATGACGTGCTCTGCACTGTGTTACGTTAACAGTAACGTTTGGAGGGTGTGCTACAGAGTTGGAAATTACTTTTGCATTCGGACATGATTTCTTGTCTTCtgtcttttttaaattttttatattGCACTGCTGAGAACAATAAAATGCATCGGGGTTGCTGAAGTCACTGGTCAACCTAGGCTGCGTTTTTCTTTCACTGTTTTGTCATTTGACTTGATTTACGTAATGGAACACCACTGGAGCTATAGCATGCCTGAGACTGGCGCTGGAATATACTGTATTCGGGCTCCTCTCGTTCTTTAGCTTTTTAACCACCTATTTCCATTACACTTTTTACTTGTGTCCACCATGGCTCCAACATTACACCACTCTAATATGCTTGATCTCTATTTTCTGTATTGCTTGGACTAGGTTAGACATTTCACTTGCATGGAAGTGGAAATGTCAATTTAAGTTTACTCTTTTGTATCCTATGATGTTGACCATTTGTCTAGCGGGAGCCCGATGAGCCTTTCTCTACTGATTCTTCACAGCGTTCCTATTTCTCCTGGTTTGTGTCTGTCGTTCTTCTGCCTGTGTCCATAAACCGGTCTGTCCAACCAAACAGGGATCAACTTTCCAAATGTCCATCAGCAATGTCACATGACAGGTTTAAAGGGTTGCATgcaacctggtgtgtgtgtgatgctagcGATAACATGTATTCCACAAtgccaatgaaaaaaatattaGCTGGTTCGATTGACCGAGCCCTCTGCTGGCCAAGTCGTCCATGTTAACAGAGCTTCTACTGTGGTAGGAAAATGACTTTACGTTCAAGCAGACAGAAACCGGGCGGTGTTCATAAGCGGTGTCCCAGTATCACCCAATATTGTGACTGTTCAGGGGTGAAGCTCCAAGGAAATATGAGTTTGTCCCTTCAGGAGTATGTTTGACTACACAAAATGGAACTTATGACATTTGCCATTTTGTTACCATATTACCTTTTTTGCATAGGTGTATGTTTAAACAGTGTTTCCATGTCGCCAACCCATGAAAAGGACGGCAACTTTTAAGATTTCAGACATTTTACGCCAACCTAAATGCCAAGGAATTCTAGGACATCTAAACAAAGCATTTGCAAGACTATATGTCCAGCATAATGTTACAACCAACCCCCACCCCAAAGCAGAAGGCAAACTACATATCAAGATAAGCATGTAGACTGCTGTTTTGTGTACGCTGCTACTAAACCTAGATCACGCTACTACAAAACCTAATCTTGTCTTCTATTATGTCGGTGTCTGCATGAGTGAAACTATGGTCTCTGCAGCAGTTGCTCCACTATGGGAACAGCTTCTATCTGCTCAGTGTCTAACTCCTCTTTCTGGAAGTATCTAAAAATAACAATCCAGATTTCTATAAGAAAGCTCATTGTAATAATGCTTAAACGGAAAGTGATGTAGTGGATGTTTGATTAAAGTGAACACGAACAATGTTAATAAACTATTTTTGAGACGAGATTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU692044 lncRNA upstream 99534 41312555 ~ 41314869 (+) True G607805
TU691926 lncRNA upstream 256642 41156692 ~ 41157761 (+) False G607693
TU691927 lncRNA upstream 256642 41156692 ~ 41157761 (+) True G607693
TU691911 lncRNA upstream 269781 41144403 ~ 41144622 (+) True G607679
TU691842 lncRNA upstream 316765 41097375 ~ 41097638 (+) True G607612
TU692132 lncRNA downstream 3594 41443542 ~ 41445386 (+) False G607890
TU692135 lncRNA downstream 3594 41443542 ~ 41444260 (+) False G607890
TU692131 lncRNA downstream 4068 41444016 ~ 41445386 (+) False G607890
TU692133 lncRNA downstream 4068 41444016 ~ 41444260 (+) True G607890
TU692140 lncRNA downstream 5921 41445869 ~ 41446193 (+) True G607891
XM_021609266.2 mRNA upstream 3091 41361189 ~ 41411312 (+) True ppm1j
XM_021609260.2 mRNA upstream 631186 40778742 ~ 40783217 (+) False si:ch211-105j21.9
XM_036983254.1 mRNA downstream 45740 41485688 ~ 41497176 (+) False st7l
XM_021609270.2 mRNA downstream 45740 41485688 ~ 41503766 (+) False st7l
XM_021609271.2 mRNA downstream 45740 41485688 ~ 41503766 (+) True st7l
XR_005052707.1 mRNA downstream 77837 41517785 ~ 41519305 (+) False LOC118965381
XM_036984430.1 mRNA downstream 175636 41615584 ~ 41616729 (+) True LOC118965355
TU691186 other upstream 779964 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 973771 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 1183178 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 1190232 40223175 ~ 40224171 (+) True G606464
TU690574 other upstream 1207506 40206569 ~ 40206897 (+) True G606452
TU692153 other downstream 22876 41462824 ~ 41463169 (+) True G607904
TU692673 other downstream 387263 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 1381008 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 1970443 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 2144072 43584020 ~ 43584896 (+) True G610563

Expression Profile