RNA id: XM_021609270.2


Basic Information

Item Value
RNA id XM_021609270.2
length 3793
RNA type mRNA
GC content 0.45
exon number 15
gene id st7l
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41485688 ~ 41503766 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCTAACGAAAATATGCAAATTATTGTTAGAACAGGCCAATAGGAGCTCGCTATCTCATGCTttgctctgcccacctccttgtttGTTCGGGCCAACATGATtcatttgctcccattggaaacgacaggctctgATTTTTCTTGGGTTACTTTTAACAAATCTTTGGTGCCACTGGCACATGATTCCTCTGTTTACAGCACAGCCATCCGGTAAAAACATGGAGGACGCCACCAGCAGTAATCCTCAATCTATTGGATTTACAGAGAAATTAAAATCATGGCTGTCCTGGTCATGGACATACATATGTGCAGTTTGGTTTGCCATGGTTTTAACTATGATCTATGTTCTGCGAAGCCCCTTGAAACTGCAGGACACTCTTACCTCAGCATCTGTGTTCTTGAATACACTGACCCCTAAATTCTATGTGGCACTCACTGGAACATCCTCTCTCATCTCTGGCCTAATCTTGATATTTGAGTGGTGGTACTTTCGTAAGTATGGGACCTCGTTCATTGAGCAGGTGTCTGTTAGCCATCTGCGGCCACTCCTAGGTGGGGTGGAGAGCAGCACGACCACTGGCCTGTTCTCCTCAGTCAACGGAGAGGCTGAGCCTAGACCCAGTGTCTCAGAGTGTAAAGTTTGGAGGAATCCTTTAAATCTATTCAGAGGAGCAGAATACAGCAGGTACACATGGGTGACTGGAAAAGAGCCTTTGACATACTACGATATGAACCTGTCTGCTCAAGACCACCAGACCTTCTTCACTGGCGACACTCAGCAACTCAAGTCTGAAGATACTGGTTTGAATCTAAGCTTTTCAACTGTTATGCAGAAGGCCTGGAGGGAGAGAAATCCCCAAGCCCggatcagagcagcttaccaggCCATAGAGATGAACCACGAGTGTGCTGCTGCCTATGTGCTCCTGGCTGAGGAGGAAGCTACCACCATCACAGAGGCTGAGCGGCTGTTCAAACAAGCCCTGCGGAGTGCTGGCAAAGACATCAACTTGCTGGTGTATATCAAACGCAGACTGGCCATGTGTGCACGCAAGCTGGGACGCATCAAGGAGGCAGTGAAAATGATGAGAGATTTAATGAAAGAATTCCCACTGTTGGGAATGTTGAATATACATGAAAATCTCCTAGAGGCATTACTGGAGCTGCAGGCTTATGCTGACGTACAAGCAGTCCTTGCCAAATATGACGACATCAGCTTGCCAAAGTCAGCTACTATATGCTACACGTCTGCACTGCTGAAAGCACGGGCTGTATCAGAGAAGTTTTCTCCTGAGGCAGCGTCCCGGCGGGGcctgagcactgcagagatgaacgctgtggaggctatacacagagcTGTGGAGTTCAACCCACATGTGCCAAAGtattTATTAGAGATGAAGAGTCTGATCCTGCCTCCAGAGCACATCCTGAAGAGGGGGGACAGCGAGGCGGTGGCCTACGCCTTCTTTCACCTGCAGCACTGGAAGAGGGCCGAGGGAGCCTTAAACCTGCTGCACTGCACCTGGGAAGGCACTTTTCGGATAATTCCCTACCCTCTAGAGAAGGGTCACCTGTTTTACCCCTACCCTGGGTGCACAGAAACAGCAGATCGGGAACTGCTGCCCTCCTTCCACGAGGTGTCTGTGTACCCAAAGAAAGAGCTTCCCTTCTTCATCCTCTTCACAGCGGGCCTTTGTTCGTTCACTGCCATGCTGGCCATGCTCACACACCAGTTTCCTGAGCTCATGGGCGTCTTTGCCAAAGCATTCTTCAGCACCCTATTCGCACCCCTGGGTTTCTTCGCTGACAAGATGGAGAGCTTCATGCCGTCCAGTTTTTGGCATCAGCTGACTCGAATCTgaccccatcacacacacacacgcacgcacacaccacatacacaaacacactcctcAGACAGCAACACTTCGAAACTATTGACAGAAATGTTTGCTCTCCTGTCTTCAGCATTTACACACACTTTGGGAATGATTCTGTTGGCGAAGTCTTGTATCatgagacagattttttttttttaagtaaacaTTTACCAGATATTCACACAgtcattcatttttttattattaccattattataTGAACTTGAAGTTACTTTGAGTAACACAGAATGGTAAATTGAGAGTATTTCAACCCACAGTTTACTCCCAAGTCTGGCCTCGAAATTGGGCCATTCTCTCATAGATGAAGTGCCGAAACAATAAGTGAAACAACAAATGAATGATTCTAAATGAGCACACaattcatctttttttttttttggagtgCAGTGACGGTTCACGTTTCATCATTCTGAAAGCTAACACTACAGTTCCTACTCTGTTCTATTTGCGGTTGACAAATGTATTGCCTCTGTTAGCTGGTGGaacaggagcgagagagaggtaaagaagaggAGAAACGGTACTAGAAGGCCTGTTTTCTAAGATCACAGTTATGTACAGACACATTTCTGTTCACTAGAACAAAGTATGTGTGTCAAAAGAGTACATGCCAGTtgagatgggtaaaaataaataaataaagcataACCTTTATGGTACATAGTTTCCTATGGGGCCGGAGTTTGTGATTTACTGCCTCACCCTGTCTGTGGTGTATGCAACGCCTGCAACGTTTTGCCAGTTGTTGCTACGGCATGCCACCTCAGTATTATATCACTCTAGCCCCTCAGACGTAGCATGAAAATGTAAATGGGATATTGACTGGTCATGGCATGGGCAGTCATGGCATCACTCACAGCCAATTACATAACGGAAAGCTGCATTTCTAGTTTCTCCTCTATGAGTTGGAGGCAACTCGTATTGCTCAGGTGTTATGGGCAGTGTTtaacttgggcaggagctcaccgaaGCTGGGTACCGGCACCGGCATGTTCTACtacttgagctcctgttcctctttataaaatactagctcaaaagtattgtggagctcctgcacttacatataaacagtaccggcacacaaaatgagtaccggcacctatttcagttCAAGTCAAGCACTGGTTATGGGGCAATAGCAATCACAACAGGACACTATTTGTTTGAAGTACTGTATGATCTCACTTTATCCTCATCAGAAAATACTCTGAACCATGATCTAAGACTAGTCAATAGCCAATATATTGTGGCAAGACTTGAATAGCATGAAGTGCCTCACTGGCTCAACAGACAGAGTGGAAATAATCGGCTTGATGAAATGGAAAGACATTGCCCACGATACTGCCAGATATTTATTGTATTGAATCAACGTTGCGGGCATACAGTGCCTTATTCACCGGGGAGGACCAGTGGTTTCAGAACATGCTCATTCATTTGCTAATTCCTTCAAACTGCGTTATACGTTTGAGTGTACATGAACCCAATCATGAGTCAAGGCAGCAGTGAGAGCTGACCGTTTATTGGTTGCTGGTGGTGCGTTGGCATCACGGTCAATTATCACACATTGCTCGAGCAGCACTAATAATTGGTTTGCTTACATTCAACGTGTGCGTCAAAGCCATCAACATTCCTACCCGGCTATACTGTGCACGATCTGGGTGTACTTACTGTGCACTATTTTAATTCCATACTGTTGGATTATATTTGAGTAACATGATGAAATGCTGAAGACAGAAGTCATACTATTTGACCTAACTACCATATGATGAGTTGGATAGCTCACAATAAATTGGTTATTGAATGTCATTTTAATGTGTTTTGTGTTTGAATTTTTCTTGTACATTGTGAACAAATCCCCCCAAAATAAAAATGATTCAAGATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU692167 lncRNA upstream 1302 41469096 ~ 41484386 (+) True G607910
TU692157 lncRNA upstream 16832 41468618 ~ 41468856 (+) True G607908
TU692141 lncRNA upstream 39117 41446296 ~ 41446571 (+) True G607892
TU692140 lncRNA upstream 39495 41445869 ~ 41446193 (+) True G607891
TU692133 lncRNA upstream 41428 41444016 ~ 41444260 (+) True G607890
TU692441 lncRNA downstream 3053 41506819 ~ 41507211 (+) True G608166
TU692444 lncRNA downstream 4687 41508453 ~ 41508652 (+) True G608169
TU692445 lncRNA downstream 5131 41508897 ~ 41509173 (+) True G608170
TU692449 lncRNA downstream 7560 41511326 ~ 41511552 (+) True G608174
TU692450 lncRNA downstream 8036 41511802 ~ 41512042 (+) True G608175
XM_021609267.2 mRNA upstream 45740 41414403 ~ 41439948 (+) True rhoca
XM_021609266.2 mRNA upstream 74376 41361189 ~ 41411312 (+) True ppm1j
XM_036983250.1 mRNA upstream 702471 40780464 ~ 40783217 (+) False si:ch211-105j21.9
XR_005052707.1 mRNA downstream 14019 41517785 ~ 41519305 (+) False LOC118965381
XM_036984430.1 mRNA downstream 111818 41615584 ~ 41616729 (+) True LOC118965355
XM_036983255.1 mRNA downstream 157768 41661534 ~ 41728773 (+) True LOC110527773
XM_021609277.2 mRNA downstream 238795 41742561 ~ 41754877 (+) False LOC110527774
XM_021609278.2 mRNA downstream 246827 41750593 ~ 41754877 (+) False LOC110527774
TU692153 other upstream 22519 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 851249 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 1045056 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 1254463 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 1261517 40223175 ~ 40224171 (+) True G606464
TU692673 other downstream 323445 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 1317190 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 1906625 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 2080254 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 2325238 43829004 ~ 43831880 (+) False G610622

Expression Profile