RNA id: XM_021609275.2


Basic Information

Item Value
RNA id XM_021609275.2
length 2710
RNA type mRNA
GC content 0.52
exon number 5
gene id cttnbp2nla
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41542907 ~ 41567433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGAATTCGGACTTGCCTATAGGCTGATGGACTTGTCACATTTGAACTAATTTCTTCCGTATCGGAAACTGAAGACGCAAGACAAGACAATCTTTAACAATTGGCAAAGTTGATGTTGGAGTTTACAAAGGCATTGAAAAGACATATGAAGGAGCCCCAGATGAACATGGAGAGCCTGAGCAAGCCAGAGCTGCTGATGCTCTTCAGTGTCCTGGAGGGAGAGCTGGAGGCTCGTGACCTGGTCATCGAGGCACTCAGGgcCCAGTGCAGAGACACATATGTGGAGAAGCGCTATGGGAAGTACAACCTGAGCGACCCGTTCCTGGCTCTGCAGAGGGACAGTGAGGCGTTGGGGGAGCAGAGCCCTGGGGTCCACCAGGCTTCAGCCTGCTCTAGCCCCCTGGCTGTGCTCAAGCAGGTGGTCACCCACTGCAGGAGGATGCAGGAGAAGATGCTCGCCCAGCTAGCTGCAGCCGATAGCAGTCACAAGAGGGTCATTGCAgatctggaggaggagagaagaaggcaTGCAGAGGACACCGCCGAGGGCGATGATGTCACTTGCATCCTGGAAAAGGAGAGGGAACGCCTCTTGCAACAGCTGGAGTTTGAGCGGGGCCAGGTGCGTCGTCTGGAGAAGGAACAGAAGAGGGTCCTGGAGCAGCTGGAGGAGGAGCGGGTGCAGCACAAGCAGCTCTCCTCTGCCCTGGCCAAGGAGTGCAAGTGGGCCAGCCAGCGGGCCCTGGAGGTGGACCACCGCCTGGATGAGGCAAACCGTAGGCTGGAGAAGGAGCAGGGAGAGATCTTGGCCCTGAGGGCTGAGctacagaaggagaggaggagggccctgCAGATGGAGGCCAGGGTGGAGGAGCGGCTGGCTGAGTTTGACACGGAGAAGGAGCAGCTTCGCTCTCGGCTCAAGAGGGAAGAGGCCCAGTGCTGCCTGTGGCAGGAGCAGGTGCAGGCGCTGAGGAGAGAGCttcaggaagagaggggagatgaggaggaggatgagaggagagactcTCCTGTGGATATCAGTGGAGGGTCACCACTACTACGACCACCACCAGTGGAGGGGGGTGAAGAGCCTAAAGTCAACGGTCACGACTGCCTCAGGGAGGACGCCCTTCCACACAGACTGGGCCTGGACAACCGGAGTGAGAACAGCAGCCCTGTCCTGCTGTCCCCTGCCCTCCTGAACCAGAGCCTGTCCCCCTGCAGCACGGGGtcctcctccctcacctcctccccgtgCTCCTCTCCTCAGCTGACCAAACGGCTGGCCCTGGCTACCAGTCCCAGCTACCAGTCCTCCTACCAGGCAGGCATCAACCAGCGCTTCCACGCTGCTCGCCACAAGTTCCAGGGCCACACTGATCCAGAGCCACAGCaggatggaagaggaggtggcAGCCTACCCCACTCCCCTAGAGACCTGTCCCCGTCCCCTGAGTGCATCCCCGTCCCTGTCCAAAGCCCGGCCAAGCATCTGGCCCGCAGCACCGTCACCCACGTCCTGTCCCGCTTCACAGTCCAGCAGGGGGCCAAACCTCCGCCACCCAACAGCTCTCCCTTCGGCACTGACTACCGTAACCTGGCCCTGACCCCCTCCTCCCCGGTCATCCCCAGGGCCTCTGGTGCTGCTCTCCCTCTGGGGGTCTGCTCCCCAACCATCCCCCGAGCAGACAGGGGCAACCCGCCTCCCATCCCCTCTAAGAAGCCTGGCCTGGCCCAGTCTCCAGCGCCATCCATCCCTGGTACCAGAGCCAGCCACTTTCCTGAGCTGTCAGGAAGCTGTGGTCTCACCAGCGGCCAGGAGAATGTTAAAGAGCTGGACATGGTGGTTTCCTCCGTCAGTTAGCCTAGCCTCCTACTGAGTGCTACTAGCGCTGTGCTCTTTTATACCGCTCACACGTTCGTGTGCTGAGGCACGCTGCAAAACACTGTCAAGttaactgtatttattttatttttgacatGCATTCTGCTTCATTCTTCTTGTAGCACAATAGATGTGTTTGTATTTATGCATTTTGGGTTTGTTGATAATTTAATATAAGGAGAATAAGCAGTAATTAAGAGTAATGGGCCAACATGCATGTTAGTTGCTGGGTACTTTTCAAAAGTTTGCTAAGAAAAGCATGTAATGTCATGGGACAATCAAATGTCGCTACTTATAATGCAGCTTTTGAATTTGAGCTTGGaaataagcatttctctaaaTCAAGATTGGGATTTAGCCTAATACCGAACAAAATAAGAGAGTTTGTCTTAAACTGCAGAGTTTAATACTGAACCAAGGCCGCTTACAAACACATTATTATAATGTTATATTTCCTAAAATGGCACATGATTATAACATTCCATATCTTCAAGGCTTAATAAGTTGGCAGTATTCTGTGTATATGCAGTATTCTGTGTATGTGCAGAATTCTGTGTATATGCAGTATTATTAATACTACTATGTATTATGTGTAGTGTAACTACTatgaaaatatattatatttgctCTCATACCAATCGTCTGGTCAAACATTTACAATGTATATTTTTACATGAGCACAATATATCTCTTTTACACCCGCATATTGGTttgtcatatacagttgaagtcggaagtttacatacacttaggttggagtcattcaaacttgtttttcaacctctccacaaatttcttgttaacaaactatagttttggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU692521 lncRNA downstream 33200 41509468 ~ 41509707 (-) True G608242
TU692442 lncRNA downstream 35858 41506849 ~ 41507049 (-) True G608167
TU692402 lncRNA downstream 98781 41443538 ~ 41444126 (-) True G608128
TU692401 lncRNA downstream 100253 41442419 ~ 41442654 (-) True G608127
TU692336 lncRNA downstream 102962 41414414 ~ 41439945 (-) True G608069
TU692996 lncRNA upstream 48152 41615585 ~ 41616710 (-) True G608681
TU693061 lncRNA upstream 131238 41698671 ~ 41698883 (-) True G608745
TU693064 lncRNA upstream 132864 41700297 ~ 41700508 (-) True G608748
TU693114 lncRNA upstream 251710 41819143 ~ 41821578 (-) True G608782
TU693167 lncRNA upstream 276960 41844393 ~ 41861084 (-) True LOC110527778
XM_021609274.2 mRNA downstream 6617 41520228 ~ 41536290 (-) True wnt2ba
XM_021609273.2 mRNA downstream 6805 41520228 ~ 41536102 (-) False wnt2ba
XM_021609272.2 mRNA downstream 57437 41469566 ~ 41485470 (-) True capza1a
XM_021609268.2 mRNA downstream 75577 41444950 ~ 41467330 (-) False mov10a
XM_036983253.1 mRNA downstream 75577 41444950 ~ 41467330 (-) True mov10a
XM_036981862.1 mRNA upstream 230637 41798070 ~ 41817887 (-) False rap1b
NM_001165220.2 mRNA upstream 230711 41798144 ~ 41812068 (-) True rap1b
XM_021609280.2 mRNA upstream 254308 41821741 ~ 41834379 (-) True LOC110527776
XM_021609282.2 mRNA upstream 268245 41835678 ~ 41843620 (-) True LOC110527777
XM_021609283.2 mRNA upstream 276903 41844336 ~ 41854662 (-) False LOC110527778
TU692184 other downstream 194008 41156670 ~ 41348899 (-) False LOC110527764
TU693231 other upstream 377138 41944571 ~ 41951244 (-) True G608888
TU693245 other upstream 401136 41968569 ~ 42025704 (-) True G608900
TU694523 other upstream 1268314 42835747 ~ 42836069 (-) True G610047
TU694690 other upstream 1539694 43107127 ~ 43162969 (-) False G610182
TU694686 other upstream 1541175 43108608 ~ 43112038 (-) False G610182

Expression Profile