RNA id: XM_021609277.2


Basic Information

Item Value
RNA id XM_021609277.2
length 3685
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110527774
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41742561 ~ 41754877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATTGCTAGTTCGTTCAAATGTGTATTTTCTCTAGTCTAAAACACTGTCAACGCCTAACTACTTTATATTTCAAATTAAATGTAGATTGAGTTATTTTAATACCACATGGCCATAACTCATAAAGTCCATTGCAAATATATTCTCTTTTTTTTTCATTACAGCTATAACGTCAGCACAGTGCCAAGGAAAAATAAACATCGCAATCTCATTGGAGGAAATTGAGTGGTCAACGTAAGCGCTCCCCGTGAATGAGAAGAAGAATAGGTTACAAAGCAGGGGATGACAAGTCAGAGATATCGACAGGCAATCGTGCAAACCTAAATAATCTTTAGGACTAAACAATCAATCATATTTGGAGTAAATATACCCAACACAGAGCGACAGATTCGAGAGTTTGTGCTTTTGGAATCCCACGTCCAAAACTAGACGAGGGCGCGCATTCCAGAACAAGCTTGGCGTTTTTAGCTTGTTCCATCATCATGACGCTGACAATTGAATAGCTTAGACTATGTGACTTTTGTGATAGGCATGCTTGAAATAATGAGCaagtattttatttgaaaaagCCTACTTACGTTTACAAAAATGGAACGACAGCTTTACATGTCAGAGCGCAAAAATATGGATACTTGCTTGAGACGTCTGAAGCAGGAACTGGTGTCTATGAAGGAGGCAGGAGATGGCCTCCATGCTCAGATGAACTCCATGATGGGGGCTCTTCAGGAACTCAAGCTTCTACAAGTGCAGACAGTGCTGGAGCAACTAGACATCTCAGGGAGGCCAATCCAAAGGGCGGCCCCACCACCAACAGCAGACACATGTGGCCCTTGCCCTATTCCCAGCCTCAAGCCTACTCACAGGCCCCCCTTGGACTGGACAACTGGTCgggaggagcagcagcagcagagccgGGTGGGGCACCGGAGCAGCCTGGgcacctctccttcctcctccagccTGGAGACATTGGAGACTGAGAGTGAgagccatcctctccctctcccccgcaGAGTGTCAGGATACACGGCCCCACAGGTGGAGTACTGTGGCCCACGTCTTAGCCAAGTGTTTCCAGAGCAGCATCAGCAGCCGGCTCACCCAGCCCAGGTGGTGGATCTGCCTGGCATCCTCTACAGCCTATCCAGGGAAGGCCCCTCGCTGGACAGCGACTACTCCCAGGACAGCATGGACGACTCCAGCGACTGGACCTCCTCGCTCATGAGCCGCAGCCGCAACCGGCAGCCCCTGGTCCTAGGGGACAACGTTTTCGCCGACCTGGTGGGCAACTGGCTGGACTTGCCTGAGCTGGAGAAGGAGGAGATGATTGGGGGTGTTTGTGTGGGGGCAGATGGAGCCGACAGGCCCGACTCCCCAGCCCACCCTCTCCGTCTCAGCCGCTCCCAGGAGATCTGCAGGAAGTTCTCTCTGACCACCAACATCTTCAAGAGGTTCCTGCGCAGTGTGAGGCCCGACAGGGACAAGCTCCTGAAGGAGAGACCAGGCTGGATGGTCCCCGAGAGCCAGGAGGCCAAACTCTTCAAGAGGCCCAAGAAAGTGGCCAAGCAGCAGGCCAAGGGAAGCTTCTACTTCCCGTTCTGGGCAGGTGTAGGACAGCAGCAGCAGGGTAAGGGCCGGCCATGTCCTAAGCTGGCTgaggagagacagagccagagccagagccagttCTCAGAGATTTACATAGACAGGAGACAAGAGTGGAGACAGGAGGCCAGAGTGGAGAAAATGCAGCCCTTGTTTGACTACAACACGGCTGTGTGGGTCTGATGCTGACGCTGCTCCAGGGTGGTGGCAGGTGTTGGGGATTTGGCTGGGAGCTCTGGgaggtttgtgtgtctgtctgtctccactcaGAGAATGGACTGACTGAGGAATGAACATCCACACTATTTCCCAACAGAGAGATTATCAGGGCAACTGTTTGTCTGACAATCCTAAGACCTAAGACCTGTGACTGAGAGAGTAAGCAGGACTTCCTCTTATAGATGGGTTCACCAAAAAAATTGTTAGGATTCGAATGAGTCCGTAAGTGCCCTGGACTTATACGATAGACGATACTTCGATATAGACATGATGCTCAGATAATGCTCTGAATTCCATCGTCATGGTTCACACCTCAACTCTTGTTTCATTATGTTTGAATGCTGCTGTAGGTCCCACCCAAGTGTATCCCCACCCTCATGTCTCATCTCGTACTTCTATCTAGCAATAGAACACAGCTGTTACACGTACTGCATGGGCTCTAGTAAATGTTTTATCTGTGACGTTGTGAAACAGTTGTCACTGAACTGCCACTAAACATGACCACAGGTGCTTCTTCGCCTCGTTGCCCAGAGTCAGACAGCCGGATGAATACAGAAGGGTCTAATATTGTCACATCAACCTCACTCAGGGATCGGGATGTGGCctgtgtgactgactgggtttGAACCTGGATCTCCTGTGCGCCACAAGACTGTTCTAGCCCGCCGATGTAAAGCCTAGGCGTTAGCTTGGGGAGCTAGcacaagtcttcaggtctcaggcaaggttactcatcacatATCCTTGGTCTCTGAACCACCTCCGTTACACCTTCACCGTTCACCagccacctacacacacaaagCCACTCCAGGATAGGGTTATCTCTTGCCTTGTAGACATGATGGCACATCTTGACTCTACAGCCAATCCTCCTGGCTAGCGTATTAcacatggcagagagagagagagcgagagctgtGTGCCATCTGGTTGCCTACAGTTACATAAGGACaagccagcagcacagacaagAGGTGCAGTCATTCAGCGTAGGCTGTCAAGCGTTTTCCCAATCAACCCTAAACTGCGATGCGGCCGTTGCATATGTGTGTAATATGTATCTAATGCTAAGCAGGGCCTGGAGATTTCAAGATAGCAGAGGACTGAGGAGGAGAATGTTTACAGTGAATCCTTccacatgtacatacagtactaTACCTAATGAAGTCAGCCATATGTTTTCTCTTTGCGCCTAGAACCACAGGAGAACATGTTAATGAGCATGTTAATGATGTCAACAAAGTCTATTAGCCATTGTGTTCATTTCATTTAAAGGGTCTTAAAGAGAGGAAGATTGAACCCAGTAGATATGTGGTTGGTCCTAGCTCTCTTTATGAAAGAAATTGAGGCGTTTCGGGGAGATTTCACAGAGCAGTATGGCGCAACCTTTACCGTCATTTCCCAGAGCTGAGCTCCACATCATTTCCTCAGTGAAATCACTGAAGTGACGAGGACTATTGATCTTATTTTAGAAGACATGGTATGCAAATGCAATCCTCAGCCCTCAGTAATAAGAGTGGCTCGAGGAGTTGATTTGATGTGAAACATCACCCCATCCATGCATTCGACAGACATGAATTTGATTTGACGTgaatttgatttgttaaatatCGCTATGCACATATGGCGGGTTTTTCAATATTCAGGTGGGATTATGTTCAGTTGGTCACACGTGGACGGACCGCCTCTACGAAGCCTGTTATGCTAGAAGagcctctctgcctgtcttctTCATATTTACAACTGTAATTGTCATTTTTAGCGCTGTTGTTAAAACTGTGGTTCTGCGAACCTCAAAGTGTTACTGGGTGTAAAACTGTCACTGACTCTTTGTAAATTAAACTGTTTTCTGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU692665 lncRNA upstream 26474 41715848 ~ 41716087 (+) True G608383
TU692653 lncRNA upstream 46156 41696202 ~ 41696405 (+) True G608371
TU692595 lncRNA upstream 114940 41627303 ~ 41627621 (+) True G608316
TU692594 lncRNA upstream 115612 41626717 ~ 41626949 (+) True G608315
TU692456 lncRNA upstream 223228 41518076 ~ 41519333 (+) True LOC118965381
TU692672 lncRNA downstream 53276 41808153 ~ 41817714 (+) True G608389
TU692745 lncRNA downstream 89497 41844374 ~ 41846862 (+) True G608456
TU692731 lncRNA downstream 120332 41875209 ~ 41877230 (+) True G608446
TU693457 lncRNA downstream 509559 42264436 ~ 42264667 (+) True G609098
TU693458 lncRNA downstream 510404 42265281 ~ 42265618 (+) True G609099
XM_036983255.1 mRNA upstream 13788 41661534 ~ 41728773 (+) True LOC110527773
XM_036984430.1 mRNA upstream 125832 41615584 ~ 41616729 (+) True LOC118965355
XR_005052707.1 mRNA upstream 223256 41517785 ~ 41519305 (+) False LOC118965381
XM_021609270.2 mRNA upstream 238795 41485688 ~ 41503766 (+) False st7l
XM_021609271.2 mRNA upstream 238795 41485688 ~ 41503766 (+) True st7l
XM_036983261.1 mRNA downstream 189660 41944537 ~ 41956332 (+) False LOC110527781
XM_036983262.1 mRNA downstream 189660 41944537 ~ 41956332 (+) False LOC110527781
XM_036983263.1 mRNA downstream 189660 41944537 ~ 41956332 (+) False LOC110527781
XM_036983264.1 mRNA downstream 189660 41944537 ~ 41956332 (+) False LOC110527781
XM_036983266.1 mRNA downstream 189660 41944537 ~ 41956332 (+) False LOC110527781
TU692153 other upstream 279392 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 1108122 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 1301929 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 1511336 40230885 ~ 40231225 (+) True G606469
TU690586 other upstream 1518390 40223175 ~ 40224171 (+) True G606464
TU692673 other downstream 72334 41827211 ~ 41830808 (+) True G608390
TU693833 other downstream 1066079 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 1655514 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 1829143 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 2074127 43829004 ~ 43831880 (+) False G610622

Expression Profile