RNA id: XM_021609282.2


Basic Information

Item Value
RNA id XM_021609282.2
length 4765
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110527777
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41835678 ~ 41843620 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCCCAGCCTTTCAGACCAACTTTCATGATAGACTAACACACTCCATACTGGTACCCTGACTGCAAGCCCAGTCTCAAGTCCTCCCTCTTAGCACCAGGATTGAGGCCTCTGGTGGCTTCTCAGTGAGACGGACACCACCTTCGGCCCATGGGGAGATTCTGTAGGCTCCTACACTAGGAAAGCACACTTTTCTAAAGGAGACACCATACAGCTTGTAGGCTACGAACTCTTTTAATCTGTTCTGCTGTGAGGGTGTTTTCTTCTCCAGCCAGAGGCGACCATGTCCAGGAGGAAGGTGAGGGGACTGACGCGGACGGGGCGGCAGGTGAGCGAGGACCCTGACCTGGATGTCCTTTTGTCCAACCTGTCCCCCGAGCAGATTgaggagctggagaaggaggTATTGGTGGCCCCCAACCTGGATCTCAATGAGGAAAGAGCCATAGAGCAGCCTGCCACTAACACTGTCCGGGACCGGGATGCTAAGCTGGACAGCCGGGAGTGTCCAGGGAAGCTCAGCCAAAAGGAACAGTCTATTGAGGGGGAACCCAAGAAAGAGAGCCGGAAACAAGAGTACCTGAGGAAGATGGGCCTGAGTCAGGAGGGGAAAGAAGGAAGGGGGATCAGAAGGCAATCAAGTATCACAACAGAACGAGTGAACAAGATGGAGGAGAGAAATGACAAAAGACCAGACCGCACTAAAGAGGACAGGGTCAGCCTGTCCAATAGATATAGGACAGAGGAGAGCAAAGACAAAGAAGTGAAAGAGACCCCTAGAGAAAGAttcaggagagaagagaggaaggacgCTGAAGTGAAAGACACAACTGGAGACAGATCCAGGAGAGAGGAAAGTAACGACAGCGATGTAAAGGATACAACTCGAGAAAAAtacaggagaggggagaagagggacgGTGATGTTAAAGAAACGGCTAGAGACAGATTCGGGAGACAGGAGAGTCGGGACCGTTTAGAGAAAGGGGATGCCAAGGAAAGGGAGAGGAACGAGGACAACAAGCTTATGGAGAAAAGAGACAGGAGGTTGAGCACCAGTAATAAGACAAAGGAAATGATCTCCAAGTTACAAGAGAAGAAAGAAAACGAGGCGATCAAggggaaagaaagaaaagaggatATGAAAAAAAGAGATGAGAACAAGACAAGGGGACTTGTGTCAAAGTTTGTGGAGAAGCAAAGTCGGGTTGAAGAGAGTCAAACAGACGATAAAAAAAACAGAGTGGAAGAGAAGGACAAGCCAGGGAAGGACAAGTCTGACTCAAAACTTGAGAGACAACAGTCGCCAGCTGAGAAGGAGAGCGGAAGTGAGAAGCAAGTGGAGAAGGAAGATCCCAAGGAGAAAGCGAAAGAAGACGGTAAGGAGAATAAGAAAGATGTGGGGTTAAAGCATAAGGAAAGTATAAAAGAGAAAGATAGGAGGAGTATTAGAGAcaaggaaagagaagagaaaagggaaACTGAGGAGAAAAGGGGAAAAGATGCAAACGAAGGACTAAAATCCAGCAAGGGTGAGGAACAGCGTGGGAACTGTGTGACGAACAAGAGCACACCGAGCAAGACCAAagtagaggaggaagaagacGAGGACTCCAGCATGTTCAGTGACCTCATAGAGCAAGTTTGCAGCAACGACCCCACCATGACAGAGCTCAACGTGAACAACTCGGAGGTCATCAAGGCTAAAACACTCATCCAGTTTGCAGAGGCCTTGAATAAAAACACCCATATTAAGACTTTTGCCCTGGCCAACTGCCGTGCTGATGACCACGTGGCCTACGCCATTGCGGGCACCTTACGCACCAATACGTCTATCACAAGCATCAACCTGGATTCCAACCTTCTCACCCCCAAGGGTATAATGGCCCTGATCCAGGCCTTGCAGAAAAACACTACACTCACCGAGCTGCGCTTCCACAACCAGAGACACATCTGCGGAGGcaagacagagatggagatgaCCAAGATACTGAAAGACAACACCACCCTCCTGAAGCTGGGCTACGGCTTTGAGCTGGCCGGCCCACGCATGACCATGACCAACATCCTGAGCCGCAACATGGACAAGCAGCGACAGCGGCGCCTACAGGAGCAGAAGCTGGCCCAGGCCAACGGTGAGAAGAAAGGGATGCTGGAGGTGCCCAAGACTGCTGGGGGATTCCTCAGGGTTTCCCCCAAGGCTTCCCCTAAACCCTCCCCACACCCCTCACCAATGCCCTCCCCAAAGTTGACTCAAAAAAGAGGACCAGGAGGGggccctcctccaccccctcctcctgggggcccacccccacctccaccccccaTGCTACACATAGACTCCCTGCGAAACTCCCTGACGCCCGCATCACAGAGGAAGATGGATGATAAGGCCAACAAAGCCGGTGGTACGAACTCTAGGGACCAACTCCTGGACTCCATTAGGAATACCAATATGAAGAAACTGAAGAAGGTTGCGGTACCAAAACTGTTGCAGTAATCCCCTGGAATGGAGAGTGAAAGCCAAGGAAGAGGAAGGACACAGATCTCACGGAGGATCGAAACTCCAACACATCCCACGCACAGACTGACACCCAGTCTTACCACTGTGCTGCGGGATGGATAAGGCAGGCAAGCAGAGAGTGAAAATTGAGATTTCTATTGGATGTACAGCCTTCACTGTGCCACGAGTTCTCTCCTCAAACTTAACACTGGACCGCAGGGACCccgtggagggagaagagggcagAGTTTTGCAGCAGGACGTGCCCTGGGGTCCTAGTTGTCTGCCTTTGTCTGTGTTGATGCTTTTCCTGTCATTTGCACTAGATTATGAAGCATAAGGTGACAAAAGCATATGATATGTAAGATGTGGGGGCGTGTAAAAttctataaaaaaatatatatacaaaactaCTTTTAACATTCATTGAAATATTGGATGGtaattttacattttatttgtttgTGGAGGGAATCACTTGGAATTTTGCCCAAACTGCTGATTCTCCATGGCATATTATCAGGGAATTCAAACGGGGTTCGATTTCAGCAATTCACAGGGGGAGAAAGGGTGGTTTGTAATGTGTGTCATTGCCATATCTCAAGACTGACATCTCAGGCAAAGTTTTACACATAAAAAGCAACCTAGAATCCCAGTCTTCTTAGAAAGACTCAGGAAGGAAGTAAAGTTTTTGGGGGATTTAAGTATGGTCAACCTTTAAGTACTAACAAAGTTATACAACAACGTTTAGTAATAACAATgttatttataaatatattttcataCATTTTGCTCAAAATAATGATTCTAACATAGAAAGAAATGAGAATGTCAAAAGCAAAGAAAACAAATCACAGAATACAGCGACAACAATGCAAACATATTCCAGGCTAGATGTCTTACTACAAGTCAAGTCTTACGACTAAAGATTTtaaaacagtttattttattaCCATGGCAGAGCAAAATTAATGTCTCTTTCAGTGTGATGATATTGTACAGAGCGGTTTGCCACTCTAAAAGTGACTATTGACTATTGCATGCATAATGTGGTTTCTGTTTCATTTTGGACTTCATTAATATGTTACAGAGCCTATAAAAAAAGTACTGGTATGTTTGCAATTAAAAGTGTCATATAATACACTTTATTATAATAACTTCACAATCAAGTACATCTTcaaaaaaaaataacatgaaGATACAGGATGGAGACACATCTGTCCATTATTTGATGGTAgtctaatacagtacagtaggcaACTGATACATTTACTGTATTTTGTTTGAATGTTTAACCTGTACATGCAATATTTTCCTTTCAGGTGGACATTTCCCCGGTTTTCAATGTAATATATCTTAATAATACAATTTATACTGCTTGAGAAATATTAAGTTGTCTATGTCAGTCTGTCTATTGATTGGTTGACGGAATCAGAAATTATTTCCAAAATCTATATAAGATATGTTGTCTCAGTAGAGCCCTGTAACCTGCAAAGATATTGAAACTGATGTGAGAGGACATTTTGTGACCAAATGGACAATTCTGTGTGCCACGCCAAGTATATGATGTCAAATAGATTATAATGAAAGgtttgtgtgcacacacacagagcaatgaAGTGTACCTTAGCAAAGCTAATGATCTAAtgcactgttgtgtgtgtgtgtatttcaatCTGATTTCCATTTCTGCACACGTCTGGCTGACAACACTAAATGGAATGTGATCTTTAGTGAGAGAGAGTATACACTGTTTCCAACAGATTCACACCTACAAGATCATGTCCTTCACACAACTGACAAAAGAGAGGGAACTTAACTGTCTACTTCTAGTAGTGAATATGTGTTACCATGTTTTGACATCTGACACTGGGGGTTGAGAGGGATAGCGACAGGCCAGTTTACGTCTTGACTGCCTCGGCATCCACGAAATGCCTATATTTGGTCATTTCTCAATGAAGACTTGCACAGTGATTCATTCCTTTCTTGTTCTTAATAATGGGAGGTGGGCCAGCGGTCTGTCTGGCTCTCCCCATGAACACTGGTCTGatggggagagggaatggaggaggagtgggagtggGGGTAGTAGGAAAAAATCTGAATAGATGTAGATTATTGGATTAAATGCAAACAGTGGGCTATTCCTGAATCTCCTAAGAAATTATTGCCTTTTGTAATTACACTTCATATGAGCTTTTCCTAACCTCTGGCCTGAATCATTTAAAGGAGAGAATAAAGAAAGAGTTTGGTTTTTGGAGAG

Function

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU693114 lncRNA downstream 14100 41819143 ~ 41821578 (-) True G608782
TU693064 lncRNA downstream 135170 41700297 ~ 41700508 (-) True G608748
TU693061 lncRNA downstream 136795 41698671 ~ 41698883 (-) True G608745
TU692996 lncRNA downstream 218968 41615585 ~ 41616710 (-) True G608681
TU692521 lncRNA downstream 325971 41509468 ~ 41509707 (-) True G608242
TU693167 lncRNA upstream 773 41844393 ~ 41861084 (-) True LOC110527778
TU693178 lncRNA upstream 18649 41862269 ~ 41862560 (-) True G608841
TU693228 lncRNA upstream 110554 41954174 ~ 41956189 (-) False G608887
TU693229 lncRNA upstream 110554 41954174 ~ 41956189 (-) False G608887
TU693227 lncRNA upstream 111878 41955498 ~ 41956189 (-) True G608887
XM_021609280.2 mRNA downstream 1299 41821741 ~ 41834379 (-) True LOC110527776
XM_036981862.1 mRNA downstream 17791 41798070 ~ 41817887 (-) False rap1b
NM_001165220.2 mRNA downstream 23610 41798144 ~ 41812068 (-) True rap1b
XM_021609275.2 mRNA downstream 268245 41542907 ~ 41567433 (-) True cttnbp2nla
XM_021609274.2 mRNA downstream 299388 41520228 ~ 41536290 (-) True wnt2ba
XM_021609283.2 mRNA upstream 716 41844336 ~ 41854662 (-) False LOC110527778
XM_036983258.1 mRNA upstream 11603 41855223 ~ 41873790 (-) False LOC110527779
XM_036983259.1 mRNA upstream 11603 41855223 ~ 41873794 (-) False LOC110527779
XR_005052580.1 mRNA upstream 12905 41856525 ~ 41873803 (-) False LOC110527779
XR_005052578.1 mRNA upstream 12905 41856525 ~ 41873805 (-) False LOC110527779
TU692184 other downstream 486779 41156670 ~ 41348899 (-) False LOC110527764
TU693231 other upstream 100951 41944571 ~ 41951244 (-) True G608888
TU693245 other upstream 124949 41968569 ~ 42025704 (-) True G608900
TU694523 other upstream 992127 42835747 ~ 42836069 (-) True G610047
TU694690 other upstream 1263507 43107127 ~ 43162969 (-) False G610182
TU694686 other upstream 1264988 43108608 ~ 43112038 (-) False G610182

Expression Profile