RNA id: XM_021609283.2


Basic Information

Item Value
RNA id XM_021609283.2
length 3298
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110527778
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41844336 ~ 41861084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTACCCAGATCTTGTTGATCACTAACCTCATTCCCTCCCGTCTGTCATGCAATTCCACAACTAGAGCATGATTATAGAGAGATTATCATTTGCAGCGGCGTATGGAGCAAAATAGCTGTTAAAGCTGCCAGTGGTTTTGCTCAAAAATCGACTTTTTCATCATTTTGGACAGTATGTTCACAGTAGGCAAAATGTCCCTTATCGCTATGGCTCTGCCAGTGATgaccgtcctcctctcctcctggcagGTGGGTGCCACTGATGACTGCTTGTGGTACGTGGATAAGAATGGTACGTGGCACAACGGTATCCCCTGTCCCCCGATGACCTTCTGTTGTGGGAATTGCCACAAGCGCTACTGTTGCCTGGACGGCCTCAAGAGGATCACGGAGAGGGAGCAGAAGCGCTGCGTGCTCTTCcagttcagCCCTACCACCATCGCCGGTATTGCTTCGTCCATCCTGCTCTTCGTGGCTATCATTGCTACCATGGTGTGCTGCTTCATGTGTTCCTGCTGTTACCTTTACCAGCAACGACAGCAGCGTGGCAGGACTCCCTATGACGCCCAGCACATCCCAATGGCCAGCTACCCTGTGGAGCCCATGTATGACGCTTACGGCAAGCCGCTGGTGATGGGACATCCTGATTATCAGCACCCTGGTTACCCAATGGCACCTCAGTATTCTGGCATGCCCCAGCCATACCCCATGATGCAACCCGGGCCGTTCCCCCCGTACCCCATGGCAGACCCTGGCTACCCTCAGGGAGCACCCCCTCCTTACTCCCCGCCACAGTACACTCCCCACCCCGGTCACTGATGGGATGAAAGCAAGTACTGTACATGGAGAGGAGAAACAAACTAAGCACTGCGTCAAGATGAGAAGGCGACCACAAGAAGGCAACCATGGCTCCGGCTCTCCTAACGGTTGCCTCGTGAAAGATAACCAGAGGCACTTTATTGTCCTTTATTTTCTACGTCCTTTAAAGGAACAGGAGCATATGCTGAGTTGGGGgttctcctgtctgtcctggcACTGAACTTGATTCCTACTGACAGTCTAATGTGGAAAATGTCACACCATTCCAAAGTGAGGTTAACCCACCATCATCCGTGCACTTACTCTGACATCTATCCCTCACAATTAGCGTAACCCAAGACGGCGTTCTTCAAGGTCACATGCTTTGTTTGACATGAATTCTCTGCTTAAGACATTTGACTTGAGGAATGGTGAATGTCTGTCTCTCACATGTTTGCTTGGCTTTAATCCGGTAGTGGACAGAGCGAGGGTCATACCTGCAGATAACAGGGTGTGCATGAGAGCTGGTTGACTCTTATCTGTTGTATTAAAGTCAGAATGCTCAGAAGAGTTGACGGCTCCTCTCGCTCTGTCGGACCCCTTTTAGTCAGCTCTCTGTGGGGATTTCTTTGTTAACTCATGCTCAGCTTGTCTTCTGTAATATATTAACATTTACTTTATGTATATTCGAACGTCAGTTAGACAGTACATGTTCTGCTACATACCAATTTGTCATGGTACTCAAGATGTCAGAAATACGTTTATTTATTAGTGGAATCTGTATGAATGTTAATTTTCAGTAATATATCCAGCCAATATTTAACTTAAATAACACATCTGAGCCTCGTGTCATCGTGAATTCAAGGAACTGTTTCAAGACATATTTTGTCGACAATATCTGAACATGTCTTATTATTGTTGTAACAgacacaacttttttttttaaatgtttgaccATGAAATGCTTCGAGCATTTCCTCACACTGTCTTTATTTTTGGCTATGATCTTTTTCTCTGAGCCATTGTTGTGCCCCTTGTAGGATGTTGGAACTGTACGTGTTGAGCATGTTGTACAGTTTACTATTAGTAACCACTGAAGGGCTCGTCCCAGGTCAAATGTATCGGATCAGGTGACATTCTATTTTACCCACCCTGAGATTCTTAACAGATTTTTCTATGGAATCATTTTGAGAGTTTTAGCATATTTGTTCAGAGAGGAATGATGAAGCAATCGTGCAATAGATATACAGATTCTTCTTGGCCAGCCCGTGTTTAAACGTGTCAATGTAAAACAGTGACATACTCTTATTCATAAACCCTATTGATATTTTATTATTTGAATTGGATTACTGTAATGTTTTTtatcaacatgtaaagtgtacaTGTTGTGGGTTGAGAACGTTTGAACTGTTTAGAATTTCTGCATACATTTGACCTAGAGTGTGAGTCTTACTAATAGATCAAGTTGACCCTGATTTtaaacaaataacacaaaaacaATTGTACCCTTTAATTTCTTTATTGAGACAATTGATCCAACATTACATTTCGtcgttggaaaaagtatgtgaacctctTAGATTAATCATCTGAATtaagtgtattaaagtagtcaaaagtgtagtattcggtcccatattcctagcatgcagtGACTACATCAAGTTTGTGACTTTTTATAAACTCCtgggatgcatttgcagtttgttttaaAAGTGTTTTGGTTTATGTTTTGCCCAACAGAAACGTGACGGCTTGTctttttggagtcacttttatttttAGGTAAGAATAGAGCCTGTTTTTGAACGTTTccacattcatgtggatgctaccgcCATGATGGATAATCATGAATAGATCATGAATGATGTTAAGTGAGAAGGTTACAAACGTCTTATCTACtcaattaaaaatacaaatactcCAGTCATCATTCCCCATTCGGTTACTATTGGGAAGAACATCATCCAAAACCCGacaaaaacaaactgcaaatgcatccagaggttttgtagtcacaagcttgatgtagtcattacaTGCTAGGAACCAAATACTATACTTTTGACTACTTAAATACACTTAATGCAGATGATTAATCtagaggttcacatacttttcctaaCAAAGAAATTGAATGTTGGATCAATTGTCTCAGTAAAGAAATTTAAAAGTAcaattgtttttgtattatttgaTTAAACATGTTCACATCTATTATGACATTTTAGGTAAAAATGTAAGcagaaatacagaaaatcacaagTTCACAAGCACATAATTGAAAAAAACTTTCTAAATTTTgaatgcacattttttttttttgttgtacatTTTACCAGAGCGTAAATTACATTTGTTACTAGTAGAACAGTTCCCAGCTCTTACTTGTTGGTTGTCTGTTGTTTAATGGATGGTAAGACATTGTAATACAATAAGTgctatgttttttttctttcgaATAACATAAATTATAACTTTGAAATGTAAAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU693114 lncRNA downstream 22758 41819143 ~ 41821578 (-) True G608782
TU693064 lncRNA downstream 143828 41700297 ~ 41700508 (-) True G608748
TU693061 lncRNA downstream 145453 41698671 ~ 41698883 (-) True G608745
TU692996 lncRNA downstream 227626 41615585 ~ 41616710 (-) True G608681
TU692521 lncRNA downstream 334629 41509468 ~ 41509707 (-) True G608242
TU693178 lncRNA upstream 7607 41862269 ~ 41862560 (-) True G608841
TU693228 lncRNA upstream 99512 41954174 ~ 41956189 (-) False G608887
TU693229 lncRNA upstream 99512 41954174 ~ 41956189 (-) False G608887
TU693227 lncRNA upstream 100836 41955498 ~ 41956189 (-) True G608887
TU693306 lncRNA upstream 201604 42056266 ~ 42059029 (-) True G608954
XM_021609282.2 mRNA downstream 716 41835678 ~ 41843620 (-) True LOC110527777
XM_021609280.2 mRNA downstream 9957 41821741 ~ 41834379 (-) True LOC110527776
XM_036981862.1 mRNA downstream 26449 41798070 ~ 41817887 (-) False rap1b
NM_001165220.2 mRNA downstream 32268 41798144 ~ 41812068 (-) True rap1b
XM_021609275.2 mRNA downstream 276903 41542907 ~ 41567433 (-) True cttnbp2nla
XM_036983258.1 mRNA upstream 561 41855223 ~ 41873790 (-) False LOC110527779
XM_036983259.1 mRNA upstream 561 41855223 ~ 41873794 (-) False LOC110527779
XR_005052580.1 mRNA upstream 1863 41856525 ~ 41873803 (-) False LOC110527779
XR_005052578.1 mRNA upstream 1863 41856525 ~ 41873805 (-) False LOC110527779
XR_005052579.1 mRNA upstream 3683 41858345 ~ 41873805 (-) True LOC110527779
TU692184 other downstream 495437 41156670 ~ 41348899 (-) False LOC110527764
TU693231 other upstream 89909 41944571 ~ 41951244 (-) True G608888
TU693245 other upstream 113907 41968569 ~ 42025704 (-) True G608900
TU694523 other upstream 981085 42835747 ~ 42836069 (-) True G610047
TU694690 other upstream 1252465 43107127 ~ 43162969 (-) False G610182
TU694686 other upstream 1253946 43108608 ~ 43112038 (-) False G610182

Expression Profile