RNA id: XR_005052579.1


Basic Information

Item Value
RNA id XR_005052579.1
length 3064
RNA type mRNA
GC content 0.56
exon number 19
gene id LOC110527779
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41855223 ~ 41873805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACACAGCCACAatcacaaagtcaaaattgcctatatcgtaaaaaaaaaaaaacggcttTGGGGGTGTTAATATAGTTATAAGGCAGTGTGgttatgttaaaaaaaaatcggattgtaaaaaaatgtaagaaaatCAATTGTAGAAATATGCGGGGGTTTTGACTTggtggctgtgttaactagtgacaaCGGCTGTAGTGGGCTGCCCAGGCTTCCAGGCTTTGCGGGTGAAAACATGGCAGGCATGAGTGCGGCGGGTCCTCGGTCGGCCTCTGCCGGACTGGTTCAACAAGGACTTAAAGAAGCCCTGATTGATACGTTAACGGCTATCCTGTCCCCGGTTCAAGAAGTGCGAGCAGCCGCTGAGGAGCAAATACAAGTGTTGGAAGTGACAGAGGAGTTTGGAGTCCACCTTTCAGAGCTAACTGTGGATCCTCAGGGGGCTCTGGCCATTCGTCAGtTGGCCTCAGTCATCCTGAAGCAGTATGTGGAGACCCACTGGTGTTCCCTGTCTGAGAAGTTCAGGCCCCCAGAGACCACAGACCGGgccaaGGCAGCCATCAGGGAGCTTTTGCCTGGGGGTCTCAGGGAGGCCATCAGTAAGGTGCGGTCCAGCGTGGCCTACGCTGTGTCGGCCATCGCCCACTGGGACTGGCCCGAAGCCTGGCCTCAGCTCTTCACCCTTCTCATGGACTTGTTGGTCAGTGGCGACGTCAGCGCAGTGCACGGGGCCATGAGGGTCCTCACTGAGTTTACCCGTGAGGTGACAGATACTCAGATGCCTCTGGTGGCCCCAGTAATTCTGCCTGAGATGTACAAGATCTTCACCATGATTGAGATCTACAGCATCCGTACCCGCTCCAGAGCCGTGGAGATCTTCACCACCTGTGCCTACCTTATCTGTGCGATAGATGAGCTGGAGAAGGGTGCGGCCAAGGCCCTGATCTTCCCCGTAGTGCAGCAGTTCACGGAGGCATTCATTCAGGCCCTGCAGATGCCTGATGGACCCTCCTCAGACAGCGGCCTCAAGATGGAGGTCCTCAAGGCTGTGACTGCTCTAGTGAAGAACTTCCCCAAACCCATGGTTTTGTCCATGCAGCAGATCCTGCCCATCGTCTGGAACACCCTGACAGAGAGCGCTGCTTTTTATGTCAGAACAGAAGTCAACTACACAGAGGAGGTAGACGATCCCATTGACTCTGACGGTGAGGTTCTGGGCTTTGAGAACCTGGTGTTTAGTGTCTTTGAGTTCATCCACACGCTGCTGGAGAACAGCAAGTTCAAGAGCACAGTGAAGAGGGCTCTGCCTGAACTGATCTACTACATCATTGTCTACATGCAGATCACTGAGGATCAGATCAAGGTGTGGACGGCCAACCCCCAGCAGTTTGTAGAGGACGAGGATGACGATACCTTCTCCTACTCCGTCAGGATCTCAGCCCAGGACCTGCTGCTGGCTGTGGCGACAGAGTTCCAGAACGAGAGTGCGGCAGCGTTGGCGGCGGCAGCGACAAGACACCTGCAGGAAGCGGAGCAGGCCAAGAACAGTGGCAACGAACACTGGTGGAAGGTCCATGAGGCATGTTTGTTAGCTCTGGGCTCAGTGAAGACCATCATCACAGAGAACGTGAAGAACGGCCGGGTTCAATTTGATATGCACGGCTTCCTGGCTAACGTCATCCTGGCTGACCTCAACCTCGCAGCGGCCTCTCCGTTCCTGCTGGGCCGTGCCCTTTGGGCAGCCAGCCGCTTCACAGCAGCCATGACCCCTGAGCTCATCCAGCAGTTCCTCCAAGCCACCGTCAGCGGCCTGCACGACAGCCAACCCCCCTCGGTCCGCATCTCAGCTGTACGCGCCATCTGGGGGTACTGTGACCAGCTGAAGCTGTCACAGAGTACCCACGTGCTGCAGCCGTtcctgcctgctgttctggacGGGCTGGTGCAGCTGGCTGCCCAGTTCAACTCCGAGGTTCTCACCCTGGTCATGGAGACCCTGTGTATCGTCTCCACCGTGGACCCAGCCTTCACCACCAGCGCAGAGAACAAGATCTGCCCCCTCACCATCGCCATCTTCCTCAAGTATAGTAACGaCTCAGTGGTGGGGTCTCTGGCCCAGGACATCTTTAAGGAGCTGGCCCAAATCGAGGCTTGCCAGGGACCCATGCAGATGCGCCTCATCCCCACCCTGGTCAGCATTATGCAGGCCCCCCCTGACAAGATCCCCTTTGGCCTGTGTGCAACAGCCATAGACATCTTGACCACAGTGGTCAGATACACCAAACCCCCGCTCTCTGAGATGCTGGTCTGCCAGGCCTTCCCTGTGGTGGCCCAGTGTACCCTCCGCACAGATGACAACACCACCATGCAGAACGGTGGCGAGTGTCTGCGGGCGTACGTGTCGGTGGCCCTGGAGCAGGTGGGCCAATGGAGGGACATGGAGGGCCACAGTGGTCTGTGGTACGTGATGCAGGTGGTCAGCCAGCTACTTGACCCTAGGACATCAGAGTTCACTGCCGCCTTCGTGGGCCGCCTGGTCTCTACGCTGATCGCCCGCGCCAGCACCGAGCTGGGAGAGCAGCTGGACCAGATCCTCAGAGCCATCCTCAGCAAGATGCAGCAGGCCGAGACACTCAGTGTCATGCAGACTCTGCTAACATTGGACTCCTCTCCCCAGTCTCTGATCATCTCTCTCCTCGCCCCAGTCTCTGATCATGGTGTTTGCCCACCTGGTCCACTCTCAGCTGGAGCCTTTGTTGGAGTTCCTGTGCAGTCTGCCGGGCCCCACGGGGAAACCGGCCCTGGAGTTTGTCATGGCCGAGTGGATGAGCCGACAGCACCTCTTCTATGGACAGTATGAGGGAAAAGTCAGTACGGTAGCCCTGTGTAAGCTTCTGCAGCACGGCCTCAACACAAACGACAAGCGTCTCCAGGACATCGTCGTCAAGGATCCAGAGAAGTGGACCAACGTTCCGTTGCTAGTGAAGGTCTTTAAGTTGATTGTCAATGAGCTGTCATCAGTGGTGGAGGCCAACGCAATCAGAGCTGCCGCAGCAGACTGGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU693114 lncRNA downstream 36767 41819143 ~ 41821578 (-) True G608782
TU693064 lncRNA downstream 157837 41700297 ~ 41700508 (-) True G608748
TU693061 lncRNA downstream 159462 41698671 ~ 41698883 (-) True G608745
TU692996 lncRNA downstream 241635 41615585 ~ 41616710 (-) True G608681
TU692521 lncRNA downstream 348638 41509468 ~ 41509707 (-) True G608242
TU693228 lncRNA upstream 80369 41954174 ~ 41956189 (-) False G608887
TU693229 lncRNA upstream 80369 41954174 ~ 41956189 (-) False G608887
TU693227 lncRNA upstream 81693 41955498 ~ 41956189 (-) True G608887
TU693306 lncRNA upstream 182461 42056266 ~ 42059029 (-) True G608954
TU693308 lncRNA upstream 185420 42059225 ~ 42059315 (-) True G608956
XM_021609283.2 mRNA downstream 3683 41844336 ~ 41854662 (-) False LOC110527778
XM_021609282.2 mRNA downstream 14725 41835678 ~ 41843620 (-) True LOC110527777
XM_021609280.2 mRNA downstream 23966 41821741 ~ 41834379 (-) True LOC110527776
XM_036981862.1 mRNA downstream 40458 41798070 ~ 41817887 (-) False rap1b
LOC110527780 mRNA upstream 6369 41880174 ~ 41925608 (-) True LOC110527780
XM_021609305.2 mRNA upstream 894282 42768087 ~ 42773999 (-) True edem1
XM_021609307.2 mRNA upstream 901672 42775477 ~ 42793038 (-) True LOC110527792
XM_021608268.2 mRNA upstream 931537 42805342 ~ 42808088 (-) False LOC110527110
XM_036984482.1 mRNA upstream 931537 42805342 ~ 42815037 (-) True LOC110527110
TU692184 other downstream 509446 41156670 ~ 41348899 (-) False LOC110527764
TU693231 other upstream 70766 41944571 ~ 41951244 (-) True G608888
TU693245 other upstream 94764 41968569 ~ 42025704 (-) True G608900
TU694523 other upstream 961942 42835747 ~ 42836069 (-) True G610047
TU694690 other upstream 1233322 43107127 ~ 43162969 (-) False G610182
TU694686 other upstream 1234803 43108608 ~ 43112038 (-) False G610182

Expression Profile