RNA id: XM_036983265.1


Basic Information

Item Value
RNA id XM_036983265.1
length 3940
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC110527781
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41944537 ~ 41956332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaaaaaaaaaatctgaaatcgTTATGAATTAATGTCAAAAGCGAAGAAACAATCTTTTACGTTCTGTTAAGATGTGGAGCGAAAAGGTAAGTAAAGAGCATCAGCCAGTCAAGTGCTGTTTcaaatgaaataataaaataatacatataGGCACACAGAGGGTGCACGTTCCAGTGTCATCCTGCAGGATTTCTTGCTATGGCAAAACCCAAAATGAAGGGCCCACTGTTTGCCATATTGGGTCCTGAAGCAGTTTGTGACAGAGTTTGAATGTTGTGCCCATGGACTCTGACTAACACTCCTCCCGTCTATATTTGAATGCTGTCTCTAGGTATAAGCAGAGGTTTCGCCTTCGTGGAGTTTTATCACTTGCAAGATGCTACCCGATGGATGGAGACCAATCAGGTTGCTTCACAATCGCCAAGTCTAGTTTTTACCTTGGAGAtctgggagagaaaaaaaaagagaaccAAATGGCAACCAAAGTGAACTGAATAAGAACCAAAAATGATTTGAAGGAAATGTAGATTTAAGTTGGAATTTAGTTGGAGAATACTATATTTGAATCTTAATATGGTATCCATAAAGACTGCATGGTTTTAGGGGTTTATGTAACCTTTCACTGATAATTCTTTAATCTCACCGCCCCTCCCCCCATATTTTCAGGGTGTAAGACTAAGGTTTTAAGACGTTCGACGTCAATAGAATTGAGCCATGTAGCCTAATTTAACGGAAATTTACCTTAAAACACTTTGAGATTATAGTACCTTGCAATCTGACTGGTAAGATAACTCAGGAATACATTTTTCTGATAAAAGATAGTCATAGGCCATCGGGGAAAATAAGGAATTCTGGCTCCTAGCCTACTGTCCTCCAAATTTGAGCACTTACTTGTCagttgatgtttttttttctttttagtGATTGATTCATGCTGTACTTCTTAGCAAATTTAATTTGTCTGTTGGAAGCACATCCCTGGTTCTAGGGAAGCCGATCAAAGTATCTCTATCATGTTAGCATACACTCTGCTCCGGCTCAGTCTGGACACTCGGGTCCCAAACACCTTAAGATCCCTCTGTACACAAGCTCACATACACATCCTTCCGTCTGTCTTTGACACAAGCGCCAACCGGGGGTCCCTTTCCCCCTTCCCTCCTTGCCAACACTGCTTGTATTTTGGGTGCAGCTAGAGTGAGACCTGCACCAGCCAAGAAACCTTGAAATGACCAACATTTTGTCCCCCCTCTTACAGAAACTCCTGGTCATCCAAGGCAAGAGTGTGGCCATGCACTACAGCAACCCCCGGCACAAGTTTGAAGACTGGCTCTGCAACACTTGCGGCCTGTACAATTTCCGGAGGAGGCTGAAGTGCTTCAGGTGCGGAGCATCCAAAGCTGAGTGTGAAACCAACACCACTGGAGTCCGAGAGACCCAGCAGAGCGGAGACTACTACGGCGACACGATCATCCTTAGGAACATCGCCCCCCTTACCACTGTGGAGGCCATAATGACTGCCCTGGCCCCCTACGCCAACCTGTCAACCAGCAACATCCGTCTCATCAAGGACAAGCAGACGGGCCAGAACAGAGGCTTCACCTTCGTACAGCTTTCCTCCCCTCTGGAGGCTTCTCAGCTCCTAACTATCTTACAAGGACTGCAGCCCCCTCTCAAGCTGGATGGGAAGACCATCGGTGTGGACTATGCCAAGAGTGCCAGGAAGGATCTCTTGCTCCCAGACTGTAACCGGATCAGTGCCTTCTCTGTGGCCAGCACAGCCATCGCTGCTGCCCAGTGGTCCTCCAGCCAGCCACAGCAGGGTGCTGAAGGACAGCTGTCGGAGTACAGCTACCTAGAGGAGGGCTACGTTCCCTACACACAGGACTACCAGGCCTACTACCAGCAGGCAGCAGGAGACCTTTCCCAGGGGAACGGAATACTGGGAGCGGCCCCAGCTGCTACAGGAGTGGTGATCTCACAGGTTGCACAGGTCTACCAACCCCGCCTTATCAGTCACACTGCCACACAGGCACTGCAATTGGCCCAGCAACTGGAAGCAAAACAGACCGGAGTTCACTCTGCAGCTGCAACCATTACAGCGCCGGTTTCCACAGCAACAGCGACACTCTCTGGACTGGCCACAGACACTGCTGTTCCCGACACCTCCACCTACCAGTATGACGAGTCCTCGGGCTACTACTTCGACCCTGAAACTGGCCTCTACTACGACCCAAATACCCATTACTACTATAATTCCCAAACACAGCAGTACCTGTACTGGGACAGCGAGAAGCAGACGTACGTCCCTGCCTCAGCCGCCGACCAAACTGAGCAGACGGCAAACGCAGCAGCAGCTAGCAAAGAGGCTAAGGAATCCAAGGAGAGGAAACAAGAGAAGCCCAAGAGCAAGACGGCTCAACAGATTGCTAAGGACATGGAGCGCTGGGCGAAGAGTCTGAACAAGCAGAAGGAGAACTTCAAAAGCAGCTTCCAGCCCGTCagccaggaggagaggaaagaggccGCGGCCGCCGACGCAGGCTTCACACTCTTCGAGAAGAAGCAGGCTGGAAGCTTGGAAATGCTCATGTCAGAAGCAGTGCAGCGCCCAGAGGAGCAGGCCCCAACCAACTCAGCCAAGGTTGGTCTGGTGGCAGCCTACAGTGGGGACAGTGACCCAGAGGAGGGGGGTGCAGCAGAGCCGGAGCGCGATGGTGGTGAGCAGGGCCAGGATCAGCTGACAGACTGGAAGAAGATGGCCTGCCTGCTGTGTAGGAGACAGTTCCCCAATAAGGACGGCCTGGTGCGCCACCAGCAGCTCTCTGACCTTCACAAGCAAAACCTGGAGGTCCACCGCAGATCTAAGCTGAGTGAGGCTGAGCTGGAAGAGCTGGAGAGGAAAGAGACCGAGATGAAGTACAGAGACCGGGctgcggagaggagagagaaatacgGCATCCCTGAACCCCCAGCACCCAAAAAGAAGAAATTCACAGCACAGCCAGCACCAGTCGTTAACTATGAGCAACCCACCAAAGACGGTCTGAACAGTGACAACATTGGGAACAAGATGCTGCAGGCCATGGGATGGCAGGAAGGCAGAGGTCTGGGCCGCAACCAGCAGGGCATCACTGCACCTATTGAGGCCCAGCTGAGGGCGAAGGGAGCTGGTCTGGGAACCAAAGGCAGCAGCTACGGCCTGTCTGCCTCAGACACTTACAAAGACGCTGTCCGCAAAGCCATGTTTGCCCGCTTCACTGAAATGGAGTGATTTGCCAAATATACCTGCCTCCCAAGAACAACCATATCCTACTGACCTGGTGCTATGTTCCCTGGGTTTCTGTGTGGGGGAAATCACCGTCCCCGGGCATCTTAACATCTCTCCCTACATTCATCCATAAACGGACCCCTTGAGATAAAGGGATTGTAATGGCAGCATGGGGAAGTTGCAGAGATTACATGCTTTATTAAGGGGGATTGGAGGGAGGGCCTTCCTTTGCTAAAAGATGTGCGTTTCTTTGGATGAATTTCTGAGTGCAGTCACGTCATCAGTCTGCTAGGGAATAGGAAAACGGAGAAAGGACTTGTCTATTGGAGAAATGTGAAACTATGAATTATGTAGGTTATgatttgtatatattttattgtGTAAGAATTTGAAGATGGGCACATTCTTTCCCCACCCCCCCTTTTTGCTGTGGCAATAGTATTTTGTTGGCATGTTATAAATGTACAGTTTGTATGGTATGCGTTCTCATTTTGTACAGAAATTAATTAAATGAGATTGATCAACCAATTCATGTGGACTTCATTGTGAATGCTGAGCATAATTCCATGATTTGTACAAAAGCTGTTCAATTGCAGACTTTGCTTTAGCTCGCCCTCATACCAAACTTGGGTGTCGgtcagcaaaaaataaataacattgagAAACTCA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13094 RBM5_10; RNA-binding protein 5/10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU692731 lncRNA upstream 71748 41875209 ~ 41877230 (+) True G608446
TU692745 lncRNA upstream 102116 41844374 ~ 41846862 (+) True G608456
TU692672 lncRNA upstream 131264 41808153 ~ 41817714 (+) True G608389
TU692665 lncRNA upstream 232891 41715848 ~ 41716087 (+) True G608383
TU692653 lncRNA upstream 252573 41696202 ~ 41696405 (+) True G608371
TU693457 lncRNA downstream 308104 42264436 ~ 42264667 (+) True G609098
TU693458 lncRNA downstream 308949 42265281 ~ 42265618 (+) True G609099
TU693467 lncRNA downstream 317485 42273817 ~ 42274036 (+) True G609108
TU693472 lncRNA downstream 319494 42275826 ~ 42276063 (+) True G609113
TU693588 lncRNA downstream 474188 42430520 ~ 42430738 (+) True G609223
XM_021609277.2 mRNA upstream 194101 41742561 ~ 41754877 (+) False LOC110527774
XM_021609278.2 mRNA upstream 194101 41750593 ~ 41754877 (+) False LOC110527774
XM_036983257.1 mRNA upstream 194101 41750598 ~ 41754877 (+) True LOC110527774
XM_036983255.1 mRNA upstream 220205 41661534 ~ 41728773 (+) True LOC110527773
XM_036984430.1 mRNA upstream 332249 41615584 ~ 41616729 (+) True LOC118965355
XM_021609287.2 mRNA downstream 44591 42000923 ~ 42059047 (+) False LOC110527782
XM_021609288.2 mRNA downstream 44591 42000923 ~ 42059047 (+) True LOC110527782
XM_021609289.2 mRNA downstream 103996 42060328 ~ 42225672 (+) True LOC110527783
XM_021609290.2 mRNA downstream 270476 42226808 ~ 42232599 (+) True LOC110527785
XM_021609291.2 mRNA downstream 407298 42363630 ~ 42384059 (+) True mst1ra
TU692673 other upstream 118170 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 485809 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 1314539 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 1508346 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 1717753 40230885 ~ 40231225 (+) True G606469
TU693833 other downstream 864624 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 1454059 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 1627688 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 1872672 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 2046292 44002624 ~ 44006907 (+) False si:dkey-264d12.5

Expression Profile