RNA id: XM_021609288.2


Basic Information

Item Value
RNA id XM_021609288.2
length 4742
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC110527782
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42000923 ~ 42059047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aAGCATATGGTGAGTGTACAAttgtgtgtatgttttgtgtgcacgtgtgtgtatgtgtgttcgtgTTACAGGCAGAACATGAAAGCAAAGTGATGAGCGAAATGAGAGCCAATTTTCCGTAGTCCACCGTCGGTATCATTTTCTCACCGGGCGCAGAGAGTGGGAAGCATGAACGAACAGTATCTAGGGAAGGAGGCGGAACTTAAACGAGCCCCACAGCTCAGCCATACAGTAGACCATGTACAAATGCAGTTAATATCTCAATCGACAATTTTCTGTTAGGCTACTACGAGAGATAATTGAGTGCGCGCGTTTACCGAAGAGCGTATACAGAGAAGAGACCTAGGAGTCAAGAAACAGAAGAGGAAAGTATCGAGATAAAGTAAATGTCTCATTAATCGCGGAATTCATTCGAAACCAGCGTGGCACTCGACTCAACTGatacagtatctgagggagcagactgagaggaccACACCCAGTGAACAGACACCACACGAGCCAAACAGACTTCCGGGATAACTGCTGACTAGAGTATGGAGCCGGCACAATCAGAGATGAGCATCTTGGGATGCTCGACCAATGGGAAAGGTCACAACCTAGGAGATGACAAGTATGTGCCTATGAAGACCTTGCCAGAGGAATTAGACACGTTTGATGATCCCGATGGCATCCTGGAGAGTGAGGAGTTTCTGCCCAACGGAGATGGGACGAAGCCCATGCGCTTCACAGACTTTGAGGGAAAGACATCTTTCGGCATGTCTGTGTTCAACCTGGGGAATGCTATCATGGGCAGTGGAATCCTGGGACTGGCTTATGCCATGGCCAACACTGGCATACTCCTCTTCCTGTTTCTTCTGACTGTTGTGGCGGTCCTCTCCTGCTATTCCATTCACCTGCTGCTCAAATCCTCTGGCATTGTGGGAATCCGAGCCTATGAACAGCTTGGCTACAGGGCCTTTGGTACCCCAGGCAAGATGGCCGCTGgcatcgccatcacactgcagaACATCGGAGCCATGTCCAGCTACCTGTACATCGTCAAGTCTGAGTTCCCATTGGTCATCCAGGCCTTCAGTAGGGCGGACCCCACCGCTGATTTGTGGTACTTGAATGGGAACTACTTGGTGGTCATGGTCTCTATTGGCGTTATCCTACCATTGGCCCTAATGAAGCAGCTCGGCTACCTGGGCTACACCAGTGGTTTCTCCCTTAGCTGCATGGTCTTCTTCCTCAGTGCGGTGATCTATAAGAAGTTTCAGATCCCCTGTCCCTTCGAGGAGTTCTCAGCAGCCAATCACACAGTGTCTCACCTCAACATTCACCTAAACATCACTGACAACCATGCTACCCATGATAATGGTCTGGTACATGAGATGGATGACTCCCACTGCGGTGCCCGTATGTTCACCATGAACTCTCAGACCGCGTACACCATCCCCATCCTGGCCTTTGCCTTTGTGTGTCATCCTGAGGTTCTGCCTATCTACACTGAGCTCCGCAAcCCTACTCAGAGGAGGATGCAGCACGTCTCCAACCTCTCGATCCTGGTGATGTACACCATGTACTTCCTGGCTGCTCTCTTCGGCTACCTGACCTTTTACGGTAAGACTGAGACAGAGCTGCTGCACACATACAGCAGGATCGACCCTTATGACACGCTGATCCTGTGCGTGCGATTGGCTGTCCTCACCGCTGTCACACTGACCGTCCCCATTGTGCTCTTCCCAGTGCGGAGGGCTCTGAATCAGATGTTCTTCGCCAGTAAGTCGTTTAACTGGCTTCGTCACGTGGCCATTGCCGTCACTCTACTCTCCTTCATCAACATGTTGGTCATCTTCGCCCCCAACATCCTGGGAATCTTCGGCGTTATCGgtGCCACATCTGCCCCGTGTCTGATCTTCATCTTCCCTGCTATCTTCTACATCCGCATTGTGCCTAAGGAGCAGGAACCCATGCACTCCATCCCCAAGATACTGGCCGCCTGTTTCGCTGGTCTGGGGGTCGCCTTCATGATCATGAGTTTGAGCTTCATCATCATTGATTGGACAACGGGGAGCAGCAACTCTGGCGGTGGCCACTAGAGGCTGCCCTCTGCACTGAGCAGGCCGGGGTCGGCAAGGGGCTGGCAGGGGCTTTGAGGGGATgcctaggagtgtgtgtgtgttttttagaACTGTTTCATGTAATTGATGCACTATCCCCTCTGTGGTAGAGCAAAGGTTAGAGGTTAAGGGACAAAGATGATTGGGGTAGGGAGGGGAAGACAGAATCAACTTGCTGGGCAAAACCATACTGAGCATTTCAGTCTTCTTGAGACTAAAGACTCCGAAAAAACAGTCTGTACTACAGTAATGCAGTATGTAGACCTGCACAGAGGAGGGCTTTTttggtatttttttaaatcattatcATGTGTATTATTTATGAGTGGGATAGTGCATCCTAGTCAATCCATAATGGAAAATCCTGAAGAAACTCATGATGGCTTCCcttcctttcccccctccctcccttcatccatcctcccatccttATTTATCTATTTTCCATCTGCCTGTTTCTTTCCCTCCGACGCCTTAATTCATGTCAACTGCAGCTAGTACTGTACAGAAGAAGCACAGATGGAGATATGGTTGAATCGCTATGtaaaggaaggaaaggaaagcACATGTTCTATACATTACATGTCATTTGGCATCTTTGTATGAGAAAATCTGACATTTTGTCAATAGAAGAAATAGCTACATCTATAGATTAGGTGAGTGCTGTAAAACAAAGAGTCTGTGGCTGTCTTTGTATCCTGTCTATCACTTTGTGCCAGTAGCACTCAACTTAACCATCAAAGGGTAGTAGGCGTTTCCTAATATTCTATTGGCACGAGCACACAAAGATACAGTATATGTTTTCTCACAAGAGTGCATTTAGCCTGAGCTGTTTTATGTGCCAAAGCTAAGGTTGAATGTGGTTTGTGGTTGTTGGGCTTAGTCCCATGATGCATTATGGTGTTTAACTCTTGCTGCATCCctggtacatacagtacactcagATAATGGAGGCGTGGCGTTCAACCAACCACACACATAGCCTTTTCGTTGAAACAGTaatgtatatttatttaactagctatatccatgttttttttaaatttcacaaGTGAGCTAATGGACCTCAGAACAAAGTATTTAACTATATGATCAGGTATCTTGATAGACCTTATAGATGGTATGCGCAGTCTATATTCGATGATTTTGCATATTGGAGGGTTTTGATGACAGTTGAATGTGTAGGAGGTGAGCTATAGGGCACTGAGCTGATTAAGAAGAAAAAACATATAGAGCCTTTTACATTCATGTTAGTTAGATGATCAACTGACATCCTAGATACAGAATTGACTGATTTTTATGATCAATTGTGTTTTAAATTAAGATCAACAACTTAAACTAGCCTTTTTAACACTAATAGCACATATTTCACTCATACTTATATTTCTACAATTCATTTGTAAACCCTCGTTTAAATTCAGTACAGTTCAGGTGAACCCTTTCAGTTACTACGAATGGTTAAGCTTACTGTTTTTGGCATGACAAAATATGTAGGAAACGTGTTTTAGTTATGTGTTAGTTGTGACATACGGTCCGTCCATGTTGTTGAACTACTCTATATTGTATTTTAATATCTCTTTTCCACTTGTTTTGTGATTGATCTTGTGGTTGGAAGTTTTAGTGAAGGAAAGCTGATGTGTCACCTGTCCAGTCTGTCTGGTGATTGGCTGATTTAATTCATTAATTTACCGTAACTACTGTGATATTCAATCCATAATACGTTGATGTTTGGGCTCTATTTCCAAAACGTATCTGGTCTCTAACAGTGAGCTCTTGTGATCAAGTACAGTTTGACAATTAAGTGAATTGTGATTGTTAGATTTAGTTTGATTCGATAGCCCAATGCCCCTTCTTAAGGCTTCTCAATTGTGTAGTGCAACATTCAACACTGTGACGTCGTATCTCTCAAAAAACATAAATAGCATTGTAATAACATTGTTACCAATATATCCTGGCAAGTCCTACGTAATGTATGTAAGACGATTGTTCCTTTCTTATTTTATTCTAAAACACTGTAGCCGGTGTTGCTTTCTCTTGTGTACATTAATTGAtttgtaatttgtaatcaatagAATGTTATTGAGCTGTTTCTTTTACTCATCAACGGCTAAAAGGTTATTGCATGTATCTGACTCAACCCTATATTTCTCCTGGTCTTGCTGAGGCAGTGGTTGTGGTAAAAATGAATGCCTGGTCAAGACCAGTCAAGGAGGCAACAGTTTGCCATAGACTGGGATTAGGCCTCTTCTGTCTGGGATTGTGTCTACATATCTAGCTACTACCTAACTGTTTCTCTCTGAGAGGCCTTGCTCTTCAACTTTAGAGCTTTGCTACCCCTATTATAATGTCAGAGGCGACATTCTCAACATTTTGCCTCTTTCTCTTATACCCAAACTATGCCAGCCAGttaacctgttgttgtagctcttGTTTTACCTTTGCAATTTATTTCTAAGGAAATTAAAGGACTGAGTGAATAACAAGTTATATATGAATTTTGGGCTTATAAAGCGGCTTATATAAATAATGTATATAAATGTAAACCCTTTATATTCTTGATGCATATCTAGCTTGTATAGTGTAAATAGCTGGGACAGTTTTAGTCTGACAATTAAAAAACAATTGTAGAAGTTTTTA

Function

GO: NA

KEGG:

id description
K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU692731 lncRNA upstream 123693 41875209 ~ 41877230 (+) True G608446
TU692745 lncRNA upstream 154061 41844374 ~ 41846862 (+) True G608456
TU692672 lncRNA upstream 183209 41808153 ~ 41817714 (+) True G608389
TU692665 lncRNA upstream 284836 41715848 ~ 41716087 (+) True G608383
TU692653 lncRNA upstream 304518 41696202 ~ 41696405 (+) True G608371
TU693457 lncRNA downstream 205389 42264436 ~ 42264667 (+) True G609098
TU693458 lncRNA downstream 206234 42265281 ~ 42265618 (+) True G609099
TU693467 lncRNA downstream 214770 42273817 ~ 42274036 (+) True G609108
TU693472 lncRNA downstream 216779 42275826 ~ 42276063 (+) True G609113
TU693588 lncRNA downstream 371473 42430520 ~ 42430738 (+) True G609223
XM_036983262.1 mRNA upstream 44591 41944537 ~ 41956332 (+) False LOC110527781
XM_021609289.2 mRNA downstream 1281 42060328 ~ 42225672 (+) True LOC110527783
XM_021609290.2 mRNA downstream 167761 42226808 ~ 42232599 (+) True LOC110527785
XM_021609291.2 mRNA downstream 304583 42363630 ~ 42384059 (+) True mst1ra
XM_021609292.2 mRNA downstream 402920 42461967 ~ 42500915 (+) False camkva
XM_021609294.2 mRNA downstream 408357 42467404 ~ 42500915 (+) False camkva
TU692673 other upstream 170115 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 537754 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 1366484 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 1560291 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 1769698 40230885 ~ 40231225 (+) True G606469
TU693833 other downstream 761909 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 1351344 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 1524973 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 1769957 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 1943577 44002624 ~ 44006907 (+) False si:dkey-264d12.5

Expression Profile