RNA id: XM_021609301.2


Basic Information

Item Value
RNA id XM_021609301.2
length 3299
RNA type mRNA
GC content 0.54
exon number 17
gene id LOC110527788
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42513096 ~ 42530382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCAGGATTACAGGAGTGCGACTGTGAAGGACAAGGTTACTCATACAATTTGCATAACTGGAATTCCTAAGACAGCCACAATGGAACAGATTCTTGGTGCCTTTGCAGTCCGTGATGGTGTCCCAATGCAGGGCATGAAGATAAAGAATGTTGTGCCAGGGATCGCTGATGGTTGGCACTAAAACGGCTCTCATGAGATACGTCCAGCCGGACAGAAGTGTCAAGGAAGCTCAAGAACCAGGCCCTCCGGCCCAGGAACCCCTGCTGCCAAGCCCGGGCCAGCTCCTGGTCAACAAGGCCAAGAGCGACCACTACGGCCAGAATGGCTCACAGGCCAAGGCCCCAGTGGACCCCCTATCTCAGCAGGGCTCGTGGCAGCGCAGCTCAGACCTCACCCCAGAGGCCTGGCAGCAGCAGGTCGACCAGCAGCTCAGACAGCAAGAGGCTGAGCAGCAGGCAGAGTCCTGGGCCAGCCGCAACCCCCCTCGCCAAGCTCCTGGTCCTCATCAGCTGGACCCCATCTTTAAGGAGAGCAAGACCATGATCATAAAGAATGTGAAGCCCACCACAACAGTGGAGACCATCCTGAAAGCCCTGGACCCCTTCGCCTACCTGGATGAGAGGAACGTCCGTCTGGTTAGAGGCAAACCACCGGGTGCCAAATGCTTCTGCTTCATTGACATGGACTCTCATGAGCAAGTGACCCGTCTAGTTGACCTTCTCACCAAGcccaggcctctctctatcgACGGGGTCCGGGTTTACGCCGAGGTCGCCAAGCCGTTGAAGAATCAAAACTACAGAAGAGAGTTTGATAAATCCAACACTTCTCTCCTGGGGTTCCCACCTGAGTCCAGTATGATGGAGCCGCAGCAGTACTATTCATCCCAACCTCACAAGCAGCCACCAGGCGCTCCCCCACCTAACATGCAAGGAGACCGTTTGGGTGGCTCAATGGGTGGGCCGATGAGCTCAGACATCCCTCACTCCCATTCATCCGTCTCTCACTTGAACTCCAGCATGGCTCAGGGAGGTGGCTATGGTGAACCTCCATTAGTTGTTCCCTACCAACAGGCTCTGCACCCCCAGGTCTCCTCTGCGGGAGTAATGTCAGCTACAGGAGACCACAGCACTGATGGCTACAGCTATGCTACTGAAACTCCTGACGTGACTAACTACCTGTATGATGCCACTTCCGGGTTCTACTACGATCCCCAAACTACCTTGTACTATGACCCTGCCTCTAGGtaTTTCTACAATGCCCAGACCCAGGAGTACCTTTACTGGGACAGTGCGTCCAAGACGTACATCCCCGTGCCTGGAGGACACTCCACAGACACCCAGCCCCCCATGGCCCAATTTAATGTTGCCCTGGCACCTGACGTACAGGCCATTCTGGCCAATCCAGTAGCAGACGCTCCACTGGACATAAAGAAACCAGAGCCAACCCCTCACGTCGACCCTCCCCCAGTCCTGAACCCTACTCCTGCCCTGAACACCatgcctaaccccaacccttccccagagaggagagaggaggaggacactgCACCTCACAGCCTTGACAAGAAAGACGGCAAAGACAAaccaggagagaaagaggagaaacccAGGAGCCTAGCCGCCGTCAAAGTCATGAAGGATATGGAGCGCTGGGCTAAGATCCAGAACCGCCAGAAGGACAGCGTCCGTTGCCCGTCCCCCATACTGAAGACCTCCGTGGGCGGACTGGACGACAGGAAGACCTCCAAGGCAGCTGATGCGGCCTTCGCCATCTTCGAGAGGAAGGGTGGAGATGACCCCTTCAAGAAGCCTATGGCTCCTCCCAAGAAAGAGGGGAAGGGCTCAAAGCAGCCCATTGGCTCTCTGGGCCTGCTGGCGTCAGACTATGCAGCTACAGGCagtgacgaggaggaggaggtgcagcACGAGGCGCCTCAGGTTTCTAGGAGCCAGTCCCAGGACGAGGAGGACAAGCTAACAGACTGGAAGAAGATGGCCTGCCTGCTGTGTAGGAGACAGTTCCCCAATAAGGACGGTCTGGTGCGCCACCAGCAGCTCTCTGACCTCCACAAGCAAAACATGGAGATCCACATGAAGATCAAAAGGTCAAAGAAGGAGCTGGAGGCTTTGGAGAACCAGGAGAAAGAGTCTGTCCCACAGCTGAGTGCTGTCGAGTCCAACGGCTCCCCAGAACAGAAGAGAAGGAAGCACCAACATCAACACCAGAATAGCTGGGCTGGTGGCTCCAGGGACATGCACAAAGGCAGCGAGAGACCTGGGTTAGGCTCTGAACCTGTTGAGaggaagaagaaggagcCTGTCGTCTGGAACCATGCCACCTACAAACAAGCTGTGCGCAAGTCCATGTTCGCACGCTTCAAAGAGCTGGACTGACCTCTTCCTGTGAACACCAGGGGTGCGTTCAGTTCACTGTATGTTTTGTGCTCACCATTCTTCAACAGTCTGAGGTTTGTTTGCTGGTGGTGGTTGGTGGCCTGATCAATATGGATGTAACCTTTCGAAATCACAAAACTAATGCAGCACAACGTACGCAATCTTCCTCCGTTACCATAATCACAACGCTCTTCAGCTGGTCGTTCAGAAGGGCGCTGTTTCCGTTGAATCAAACGTTGCACACCGCTCTGTTCTACTTAACACACCCAAGATCACCCACTcttgtgtgtttgtctatggGGAGTGTTGGTCAACATAATGGACTTGCCATGCCCCAGCGGAGCTTTTTGACTGAGCTCACCTCTTACTGTACCTGGTGGCCCCAATTCACTGTACTACAAGGACTTTGACTCCCCAGCAATGAAATCAGGCTGTAGCCTGCCCACTCAGCTCAACTGTTGAGACCATGGCGCTGTCGGGAGACCGCTAGGGCCTccacatttctgcagtattttctATGCTTGTTGGAGGGCCCGTTCACCCATCCCTATCCCACCGCTGTACTGACTCCAGGAGCGAGGCAGAACCAGTGGCGTTGGGGCTAAGCTACTCCACAGACTCACCCCAAACATCAAGCTGGCTTTGACGGGCTCCTAATCAATCCTTTTTATGGATGTAGCTTTGTTTTGCCTTGTGTTGTGTATGGCTGATGTGTAGTATTATTGTGACGTGTACtcagcagccagatctgccattGTAGAATATCTGTATGCTACCAGCTGGATCCAGCTACACACCGTTTATTTTAAGATGTTTTTATATGGACTTATTCCTTTCCTTGTTTGGGTTATACTCTGTATGTGTACACGTTTACATTTTTAAGTAAACAACAAACAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU693654 lncRNA upstream 4933 42511543 ~ 42511793 (+) True G609279
TU693652 lncRNA upstream 6401 42510044 ~ 42510325 (+) True G609277
TU693648 lncRNA upstream 14953 42501559 ~ 42501773 (+) True G609273
TU693588 lncRNA upstream 85988 42430520 ~ 42430738 (+) True G609223
TU693472 lncRNA upstream 240663 42275826 ~ 42276063 (+) True G609113
TU693600 lncRNA downstream 490 42530872 ~ 42531524 (+) True G609226
TU693818 lncRNA downstream 265155 42795537 ~ 42795783 (+) True G609421
TU693820 lncRNA downstream 272133 42802515 ~ 42802747 (+) True G609423
TU693829 lncRNA downstream 285856 42816238 ~ 42816557 (+) True G609432
TU693834 lncRNA downstream 291378 42821760 ~ 42822004 (+) True G609437
XM_021609292.2 mRNA upstream 15811 42461967 ~ 42500915 (+) False camkva
XM_021609294.2 mRNA upstream 15811 42467404 ~ 42500915 (+) False camkva
XM_021609295.2 mRNA upstream 15811 42491488 ~ 42500915 (+) True camkva
XM_021609291.2 mRNA upstream 132667 42363630 ~ 42384059 (+) True mst1ra
XM_021609290.2 mRNA upstream 284127 42226808 ~ 42232599 (+) True LOC110527785
XM_036983267.1 mRNA downstream 154763 42685145 ~ 42759404 (+) False LOC110527789
XM_036983268.1 mRNA downstream 154763 42685145 ~ 42759404 (+) False LOC110527789
XM_036983269.1 mRNA downstream 154763 42685145 ~ 42759404 (+) False LOC110527789
XM_036983270.1 mRNA downstream 154763 42685145 ~ 42759404 (+) True LOC110527789
XM_021609306.2 mRNA downstream 230004 42760386 ~ 42767396 (+) True gnat1
TU692673 other upstream 685918 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 1053557 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 1882287 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 2076094 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 2285501 40230885 ~ 40231225 (+) True G606469
TU693833 other downstream 290574 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 880009 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 1053638 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 1298622 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 1472242 44002624 ~ 44006907 (+) False si:dkey-264d12.5

Expression Profile