RNA id: XM_036983270.1


Basic Information

Item Value
RNA id XM_036983270.1
length 5142
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110527789
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42685145 ~ 42759404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCACCTGCCAATGCGTCTCCCCTTCAGTAGcctacagagctgtctgtggTGTAGTGCGCCGCGTCAACTTTAGCAACTCCTCAATTTCAAGGAATAACAGATATTAACGAGAACAACAAAGTGGGATTGTACACTATTGACCGAGACAAGAGTAGAGAGCAGGAGACAAATATTGCAAGCTTAGGTGATTGCCAAGTTCATTTGGATCCATAGCTTTGTTGCTGGGGATTCGTGCAGGATCTCCGCGGCTTCATTCGTACACTGGGGACGGAGAAGGAGAATTTAGTAGGATTTTGTTATATGCCTTCTAAATGACTCTTATGACTGGAATCTGCGTAATTTCCACCGGGCAATAATAACCAGgTACCtggactctctctcctcttcttctctgtaaGCGGAGGGACCATGCTGTGGGACAAAATGTGGTGGCTGTCCACCATGCTGGCCCTTTCGGCCCAGGCACTGCCCACATTGCCCATTGAGCCCCTCTCTGCCCCTCGGGTTTTCCTCTCCTTCAAAGagctgCGATCTACTGGCACTGCCCACCACTTCTCCTTCCTGCTCAACTCAACAGACTACCGTATCCTGCGTATGGACGAGGACCACGACCGCATGTATGTGGGCAGCAAGGACTACATCCTGTCCCTGGACCTGCATGACATCAACAAGGAGCCGCTCATAaTTCACTGGCCTGTGGCTCctcagaggaagacagagtgtgTTTTGTCGGGGAAGGATACCAACGGGGAATGTGGGAACTTCATCCGTCTGATCGAGCCGTGGAACCGGACCCACCTATACGTGTGTGGAACAGGGGCCTACAACCCCGTCTGCACCTATGTGGACCGCGGACGCAGGTCCCAGGAATATATATTCCGTTTGGAGCCGGGCAAGGTGGATTCGGGTAAAGGCAAATGTCCTTACGACCCTAAACTCAACAGCGTCTCAGCTTTGATCAATGGGGAGCTCTACGCGGGGGTCTACATTGACTTCATGGGGACAGACGCGTCCATTTTCCGTACTCTGGGGAAGCAGACAGCCATGAGGACGGACCAATACAACTCCAAATGGTTAAATGATCCCACATTCATCAAGGCACACCTCATTCCAGACAGTGCTGAGAAGAACGATGACAAGCTCTACTTCTTCTTCCGGGAGAAGGCTTCAGAGATGGGCCAGAGCCCCATGGCCCAGTCCAGGATAGGCAGGATCTGTCTGaATGATGATGGTGGACACTGCTGTCTGGTCAACAAGTGGAGCACTTTCCTGAAGGCCAGACTCATTTGCTCGGTTCCTGGAGTGGACGGCATAGAGACCCACTTTGATGAGCTCCGGGACGTGTTCATCCAGCCAACTCAGGACACCAAGAATCCTGTCATCTATGGCGTGTTCTCAGTTTCAGGGTCAGTGTTTAAGGGCTCAGCAGTGTGTGTCTACTCCATGGCTGACATCCGTCAGGTCTTCAATGGACCCTATGCTCACAAGGAGGGGCCCAACTACCAGTGGGTGGCCTACACTGGGAAGATCCCTTACCCTCGGCCTGGGACGTGTCCCGGAGGTACGTTCACCCCCAACATGAAGTCCACTAAGGATTACCCAGACGAGGTGATTAACTTCATGCGGAACCACCCCACCATGTACCACGCTGTATACCCAATACACAAGCGCCCCCTGGTGGTCCGGAACAACGTGGACTATGAGTTCACCACCATCACCGTGGACCAGGTGGCCGCTGCCGATGGGAGCTACGAGGTCCTATTCCTGGGGACAGACAGGGGGACAGTTCAGAAGGTGATTGTCCTGCCCAGAGATGACCTGCAGACTGAAGAGCTGGTCCTGGAGGAGGTGGAAGTGTTCAGGGTGCCAACTCCCATAACCACCATGAAGATTTCATCCAAAAGGCAACAGCTGTACGTGGGTTCAGTGTTGGGTGTGACCCACCTGGCCCTCCATCGCTGTGACGTGTACGGGGAGGCGTGTGCTGACTGCTGCCTGGCCCGGGACCCTTACTGCGCCTGGGATGGCAAGTCCTGTACCCGCTACTCCGCCTCGCAGAAGAGGCGCAGCCGTCGACAGGATGTAAAGTATGGCAACCCAATCCGCCAGTGCAGAGGCTATAACTCTAACGCCAATAAGAACACGCTGGAGATGGTGCAGTATGGGGTGGAGGGCAGCACTACGTTCCTGGAGTGTCAGGCCCGGTCCCCTCATGtgtctctcaaatggcacctgcAGAGGGAGAACAGCGACAGGAAGAAAGAGATCCGCTCTGAGGGCCGGACTGTGAAAACAGAGCAAGGTCTGCTGCTGCGTTCCCTCCAATCGTCCGACAGCGGCGTCTACCAGTGCACGTCCACAGAGAAGAACTTCAAACACACGCTGGTCAAGCTGCAGCTGGTGGTCCTGTCCAGTCGCACGGTCAACAGTGTCCTGGTGGAGACGGGCAACCCGGCCCTGCCACCCCTCCAGTCCAGCGCCTGGACCCCCAGCGCGGGTCAGTACAAGGACCTGCTGACCATCCTGAGCCAGCCGGAGATGGGTCTGATCAACCAGTACTGTCAGGACTACTGGCAGCTGGGAGAGGGCAGTCCGGGGGACCCCATACTGGCCATCAGCAAGGCCCGGGGACTCAAGGAGCTGAAAGAGCAGAAGAAGCCCCGCAACCGCCGGCATCACAACGATGAGGATAAGCACGAGGACGACAAAGATGAGCACACCAACCTAGCCGAGACATGAGGCCCCTGGACTTACACCACATGCCGCACACTAACCCCCTACACCACGACACCCAATCCCTTGTCCcctccgctctctccctctctgcacagCCCTCCGAAAATGGGAAAGACTTCAATTGAAAGCATTCAAAAACTGAATAATCAAAAGCAACCAGAAAGAGAAACCACTACAAATAGCAAAAATAGTAAGCAACGAACAGATTCTTCttaactgttaaaaaaaaaaaaagatacacAGTATTTATTGTAGGTTGTACATAGTAAGATTCTGTGGATTTCTTTGTCCTTAAATAGAAAAACTAGgcttttttttttgtgaataGGTAGATCTGTGcaaatattattgttattatgatGCTATTATCGTTGTTAGTGTCATTGTTTATTACAACTTGTGTTATTATATGGCAAAGATCTTTGTGTTCTGTCTTTTGGAGGGAGCGCGGAGAAACGTTGAAAGGACATTTGAAGGTGTAAATACCTCCAGCTGTTTGGACTCAGAGGAATACCTTCAGAAAGGTTTTGGTATGTTGGCACCATGTTGGGTCCATTTGACTGCTGGCAGTATGTAGTCTTTGAGGTGGGACGAGTCAGATCACTGATGGAGTGACGACCCGGAACCTCCCCCAAAGCCATGATGGACAATTAATTCCCACAGCCAATGGACTATAAGGATGACACTTCATAGCATTTCATTGGACACGCAGAGAGACGAGGAAATTGACCGTAAGAGACTGCAGCTTCGAGTTGGTCCCACGGCCACAGAGAGACACTAGAGTGAAAAGTCTGGTGGGAAATTAACGCCCTCCTTCTCCGCTGAACTGACCCTGGGGTGAAACAACTGACCCTGGGGTGACCCCAAATCCCCTCAACCCCAAATCCCCTGTGTTCCACTCTTCTTGGGCCATGTGGTCCAATATGGCTTTCTGTCTATCCCATGTGTTACATTTGCTTTCATATTCCCAGTCTCCTCCAGAACTAGTTGATGTGGGCTGTTTGTGTAGAGTATCTGTAAATATAACACTCAATGTTGTACCCTTGAGGCCATGATGGTTAGAATAAGCtgttttgttttttggggggggggattgttTGTTGTTATGGGATTTAAATAGCATTGCCTTCTCTTTGTACACCATTGTTCAATTGAGATTAAAACGTCAAGCAGGCAGCTAAATCATTTGTGCCAATTTGATTATGCACAGTTATGACAAGAGATAGAGAACTTTTTCACTTCTTGTTGAATCTGATCCCATTCTCTGAGTTTCCAAACTAAGCCGTAAATATACTGGTTTGCATTCCAGCCATTACCCGGTCTCCTTATGGGTTCAGTTGTTTCATAGGAAATGTACATAACATTTCTCAACTCCTCCAATCGTCCCATGTAGTTTAATATCACAGCTCTCTTAGTAATGCACCGTTAGTCCACATCAACTAGCGGGAGGATTCCGCCCGCACTGATTTGTCAGTTGAGGGACTAGCATCGCGTAGGAGTGATGCCACCTGACGTACGACAACGGTTAGCCCATGTAAGTCACGAAAGCGAAAGTGCATGAAGACTGTTTGATTGGTTGGAGAGGGACACCGTAGGTTTCTCTGAGCTGTTATCCAGCTCCCACAGAAGGTAAACGTTACATAACTCTCACTAGAATTTAAGCAACTTCTCTGATCAGCCGGTGTTTCCGCCTGGAAAGGTGTCACATGCCACAAATGTGTATCGCGGAACGTCTCCATGTATATAGCTACAGTCACTAGAATGATCAGCTCTTGAAAACACACGCCAAACTCTTTGGGACGGTGGCTTTTCATTGTGCGCATGAAATGTATAATGTCCTGTTTGTGATACTAGTTCAACAAGCTACAGTATGTTGCTGCGGATGTCAGTGGATGTCTCTCTTGTTGCGGGAACATGGGAATAATGTCAGTGCAAGGAAAGGCAGATAGACTCATACCCTAGTGATGGAATAGTCAAAACACAGgagatgtacactgagtgtataaaatattaggaacaccttcctaatattgagttacaccccacccccttttgccctcagaacaggctcaattcgatgttcttaatgttttgtacactcagtgtaggcccctatgtctctccctctctttctctctccctctctcctcctctctctttctcgctctctttccctctcgcctctctctttctttatctctccctccaaAAAGGTACAATTGATTTGCATATtttaaatatatgcatatttggtTATTGTTTGGTATGGGTCAATGAGGAAAAATCAGTTCATATAACATAAAGCACAGTTGATGTTATTGTAATGACTTGTGTAAATTACTCTAACCTTTCTCGTTGATGTTGCTGACTAAAAAAAATTAAAGCTCTATATTTGATAAAAACA

Function

GO: NA

KEGG:

id description
K06840 SEMA3; semaphorin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU693600 lncRNA upstream 153621 42530872 ~ 42531524 (+) True G609226
TU693654 lncRNA upstream 173352 42511543 ~ 42511793 (+) True G609279
TU693652 lncRNA upstream 174820 42510044 ~ 42510325 (+) True G609277
TU693648 lncRNA upstream 183372 42501559 ~ 42501773 (+) True G609273
TU693588 lncRNA upstream 254407 42430520 ~ 42430738 (+) True G609223
TU693818 lncRNA downstream 36133 42795537 ~ 42795783 (+) True G609421
TU693820 lncRNA downstream 43111 42802515 ~ 42802747 (+) True G609423
TU693829 lncRNA downstream 56834 42816238 ~ 42816557 (+) True G609432
TU693834 lncRNA downstream 62356 42821760 ~ 42822004 (+) True G609437
TU693848 lncRNA downstream 77447 42836851 ~ 42837260 (+) True G609449
XM_021609299.2 mRNA upstream 154763 42513097 ~ 42530382 (+) False LOC110527788
XM_021609306.2 mRNA downstream 982 42760386 ~ 42767396 (+) True gnat1
XM_021609309.2 mRNA downstream 95516 42854920 ~ 42883680 (+) False LOC110527794
XM_021609310.2 mRNA downstream 95823 42855227 ~ 42881051 (+) True LOC110527794
XM_021609316.2 mRNA downstream 164143 42923547 ~ 42930634 (+) True LOC110527799
XM_021609317.2 mRNA downstream 173579 42932983 ~ 42935248 (+) True rbp7b
TU692673 other upstream 854337 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 1221976 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 2050706 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 2244513 40439100 ~ 40440632 (+) True LOC110527751
TU690594 other upstream 2453920 40230885 ~ 40231225 (+) True G606469
TU693833 other downstream 61552 42820956 ~ 42821245 (+) True G609436
TU694950 other downstream 650987 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 824616 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 1069600 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 1243220 44002624 ~ 44006907 (+) False si:dkey-264d12.5

Expression Profile