RNA id: XM_036984482.1


Basic Information

Item Value
RNA id XM_036984482.1
length 1901
RNA type mRNA
GC content 0.39
exon number 7
gene id LOC110527110
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42805342 ~ 42815037 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttttttttttttaaatcacgtagtagaactgcataagtgttgctctccactttctggaggaccaagttttagagtatgatagctaaggagatggagaaaattctgatGTTTGATTTCAAATATGCAGACGGattcgaaaagagaacacactgtTGTATCAAACATTGGTCCCCGGATCACATCTTAAAAcaaagggcaaccatggcatctgtgacagagagggagaagtgtccatccatgtttacagGCAAATTTTTGAAGAAGCACTGCACCACTCATGCCAAAACCGACTGTGGTGACTGCCCAGCGGACTCCTACTCTGAGTTCAGTGACCGCGTAGAGAACTGTCAACCATGCCTCAAATGCCAACAGGTCTATGCAAGAGCATGCACCTCAACTGCAAACGCAATCTGTTTGTGTGGCTCTGGTTTCCTGTGCTCAGACCATGTCTGCTCAAATTGTGAAAAGGAAAAGAAATGCCGCAAGGGAGAGGAACTGAAGAGAACAGGTTCCAGGGAATACACTTGGAAATGTGTCCCATGTCCTAATAACACATACTCTGACACCGAACAGGGTCACTGCAAACCATTGACACAGTGTGATacacatggatttattgtgatctTCCCTGGGAACAAGACCCATAACTCTAAATGTGGTATACATGAGCAAGGAAACAAAGAGGACGGGCATTACATTCTGGCCATTGGCTTCTTCTTCTTTGCTGTCGTCCTCTTGGTGTTCCTCACTTATGCCTGCATCAGGAGAATCAGGCACAAGCCTAACGCTAATATACATGGCTTCCCACTGTCAAAAGAGGAGAGTGGAAGCCAGCTCATCCAGCAGGCTGAAACCAAGGACAATGCCAGCCAGATTCTGCTGTCAATGGCAAGCATCTCCACTGTGTGATATCTTACATCTGCTTGCAGGAGTGCTTTGACTTCAGGGTAGCATGTCAGCTAGTCCTGAATGACCAAATGTTACTTCTACAATTTGTTTTGCAGTTAGCCTGCTATAATTTCCTTGTCTTTTGTAATCTTGTTTGTTGCTATTTAGTGTATTTGTGCAGTCTTTCATCAATACTAAGTATTATTTTATATAACTTTCTTACTTTTTTTGCACAATTAATACTGTTTTTACTCTTTCTAAAGAATcctaacatttttatttttttatttaacctttattttttacaggTTTTTTCACATTAAgataaaaatctatttttcaagagagacctggtccaacagCTACAGGGGGGACAAAGTTTCAGGCAAAACATCTTACAACATTTAACAAAAcattaaacacacatacagtaacacaatTACATATTACATAAAAAAACACGTCATAACTAAAAAACAGCTGTCCTAACGACAATTACACTTTATGATATTTACATCGaccaagtgtttaaactccaccaacgtgACTAGATCAtctcattttaaaatgttcaggagaTAATTCCAGGACAATGGAGAtgagtaactaaaactatttAGACCATGATCTGTTCTAATTCTTGGTACTGCAAGAAAGCAAATGAGAATAGGACCGTAATCTATATTTATTTACTGACCTGAttaaaaaagaacagagatagTGACATTATACCCAATATGGCCttttaaatcagtgtataccTGTGTTTAAGACtacgcaaggtcaatgacgaccTGCCAACGGCGCAGTAGAGATCACAATGACATGTTAGACATTTTTGATTGGTAATGAACCTGAGGGCCTCATGATATGCTGAATGAAGTGCTCTCAGGGTAGTAGTTGAGgcctgtatatatacacagtaccagtcaaaagtttggacacaccaactcattcaaaggtttttctttacttttctattttcaacattgtggaataaaagtgaagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU694500 lncRNA downstream 1574 42803477 ~ 42803768 (-) True G610025
TU694499 lncRNA downstream 5813 42799328 ~ 42799529 (-) True G610024
TU694455 lncRNA downstream 37951 42760566 ~ 42767391 (-) True G609980
TU694289 lncRNA downstream 274968 42528854 ~ 42530374 (-) True G609825
TU694345 lncRNA downstream 292514 42512451 ~ 42512828 (-) True G609873
TU694516 lncRNA upstream 13652 42828689 ~ 42828929 (-) True G610040
TU694522 lncRNA upstream 18540 42833577 ~ 42834270 (-) True G610046
TU694525 lncRNA upstream 26021 42841058 ~ 42841287 (-) True G610049
TU694535 lncRNA upstream 37405 42852442 ~ 42852781 (-) True G610058
TU694572 lncRNA upstream 75090 42890127 ~ 42890427 (-) True G610084
XM_021609307.2 mRNA downstream 12304 42775477 ~ 42793038 (-) True LOC110527792
XM_021609305.2 mRNA downstream 31343 42768087 ~ 42773999 (-) True edem1
LOC110527780 mRNA downstream 879734 41880174 ~ 41925608 (-) True LOC110527780
XR_005052578.1 mRNA downstream 931537 41856525 ~ 41873805 (-) False LOC110527779
XM_021609308.2 mRNA upstream 27676 42842713 ~ 42845808 (-) True si:ch73-361p23.3
XM_021609311.2 mRNA upstream 69919 42884956 ~ 42887226 (-) True cplane2
XM_021609312.2 mRNA upstream 73581 42888618 ~ 42889492 (-) True LOC110527797
XM_021609313.2 mRNA upstream 76273 42891310 ~ 42906626 (-) False LOC110527798
XM_021609314.2 mRNA upstream 76273 42891310 ~ 42906626 (-) False LOC110527798
TU693245 other downstream 779638 41968569 ~ 42025704 (-) True G608900
TU693231 other downstream 854098 41944571 ~ 41951244 (-) True G608888
TU692187 other downstream 1456443 41156670 ~ 41348899 (-) False LOC110527764
TU694523 other upstream 20710 42835747 ~ 42836069 (-) True G610047
TU694690 other upstream 292090 43107127 ~ 43162969 (-) False G610182
TU694686 other upstream 293571 43108608 ~ 43112038 (-) False G610182
TU694702 other upstream 298111 43113148 ~ 43116144 (-) True G610190
TU694694 other upstream 312774 43127811 ~ 43149026 (-) False G610183

Expression Profile