RNA id: XM_021609309.2


Basic Information

Item Value
RNA id XM_021609309.2
length 4305
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110527794
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42854920 ~ 42883680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGACAGCGTCTCGTCTGCCGGAAATTCACACGAAGAAGAAGAATACGTCAATGAGAAACATAGGCTAGTTAACAGTATTTGATAAGACACAGCAGTCTGTGGTGTATgtacctagctagctactatCCGTGAATACTTCAATATGTCATATTAAATTGTCTTTGTTGAGCGTTTGACTGAAACAGAAGTTTGTGCGTTCACAACGATACTGACATTATAGCCACGGAAAATTTGCTAACACGCTAGCTAGTGTCAACAAACTGCAAGTGACTAGCGGGTTCAAGTGACCCTCCCCAAAAGCGCGATGCTGGTAACCGTTTTCTGCGCCCCGAATGACCGCTCGGAAATCACATTTTCTCTCGATGTGTCTCCAGAAATTGAACTTAGAGATTTTGTTGCTCTGTGTGAACTAGAATCAGGAATCCCTGCTGGGGAAATTCAGATCACATATGCAGAGCAGCCTCTGAAAGACCTGACCCGTGCTTTAGGGACCTATGGACTTAAGGATGGAGATGTGGTGGTGCTTAGACAGGCAGACCGAAGGCCACCACCAGCACAATCGGCCTTCCCAGGTCTCCCACGTATTGACTTCAGTTCCATCGCAGTCCCCGGCACTTCTTCTGGTTCCAGTCAACGGTTCACCCGTAGACAGCAGCAACAGGCCCCAACCTCACAACAGCAGCGCTCTCCACCCCCTGCTGCACCCCCATCCCTACCGGGCTCCGCCTCCTCTCCTCAGGGTCTGGATGACCCCGCCTTACTGCAGCAGATGCTCTTGGCCAATCCACACGAGCTGTCCCTGCTCAAGGAGCGCAATCCACCCTTGGCTGAAGCATTATTGAGTGGAGACCTGGAGCGTTTCACCAAAGTGCTGTTGGAGCAGCAGCAGGATCGGGCTcgcagagagcaggagaggatccGACTTCTGACTGCGGACCCATTTGACATGGAGGCCCAGGCCAAGATAGAGGAGGACATCAGGCAGCACAACGTAGAGGAGAACATGACCATTGCAATGGAGGAGGCCCCAGAGAGCTTTGGCCAGGTGGTTATGCTCTACATCAACTGTATAGTCAACGGGTACCATGTGAAAGCTTTTGTTGACTCAGGGGCCCAGATGACCATCATGAGTCAGGCGTGTGCCAAGCGCTGTAACATCATGCGTCTGGTGGACCGACGGTGGGCTGGCATCGCCAAGGGAGTGGGCACCCAGAAGATCATTGGCAGAGTCCACTTGGCTCAGGTCCAGATAGAAGGGGACTTCCTGCCTTGTTCCTTTTCCATCCTGGAGGACCAACCTATGGACATGCTGCTTGGACTGGACATGCTCAAGAGACATCAGTGTTCCATTGACCTGAAAAAGAACACGTTGCTGATCGGGACAACGGGCACTGAGACCCGCTTCCTGCCTGAGGCGGAGCTGCCAGAGTGTGCCCGGCTGGCATACGGGCCCGAGGGGCGCGAGGACGCCCAGCCAGATGAGATCGCAGACCGAGAGCTGGCAGAGGCACTTCAGAGATCTGTACAGGAGAGCGGTGGACAAACTACCTCACCGGAATCCCCACCATTCCCAACACTCAAACCCCCAAACAACATGCCCCTGTCCTCCCCCCTTTCCCCCGGTCACCCCCGGAGCCTTGCCCTGGACCgttctcagtctgctccagcctaCATGCGCCAGGCCGGGGCCCCAACACCAGGGCAGAGCCAAACCCAGCCTGGTTTCCTGGGTCTCCCCATCCCTGGGCCCTCATCCCAGAACATAGCACCTACAGCCCAACAGTCTCCTCTCTCAGACCCAAGCCCTACCAACCCCACCCAGCGACTCCTACCCACCATCCCCACTCCCCCGGCTCAGGATCTGTCCACATGCACCCCTCCTGCAGACAAGTCTGTGACTGGCACTCCCACCCTGGGATGTTCAGACAGTCAGATCCCTCCAGAGATGTGTGTCTCTGAGAAGGCAAATAATGGCTCCCTGTCCCCCCTCCCAGAGGAAAGCCTCCCAATTCAGCCCATGGAGCAGGAGGACATGTCAGTCAACACCACAGATCACCGGACATGTCTGAGTAACCCAAGTCAGCAGAGTGGAGAAGGGGGTTCCCACCGTCCCATCTCTAATCCCCCATCACTCACCCTGGAGCCCTGTCTTTCTGGATCCACATCTGCAGAGATGGAgtctccccctgcctcctcccAGAGCACTGTGCAATCAGAGAGGGACCAGCCAGAGGGGGAGCGCTGTCCCAACTCAGACCAGATCCCGTCTCTGGCCCAGGCCCTGCGGGAGCTCCATGAGCTGCTGGTGTCCAACAGCTGTGGCCTGTCCCCCCAGGACCGCAGTGTTTCCTGCTCCCCCTCACACAGACAGGACGCTGACGGACTGAACGACAACCACAACCCCACCGCAGAGCCCCAAACCCTGACGCCTGAAAACACCACACAACCCTCCCCCTTTACTGCCCTTATAGCTGGTGCAGAACCATGCGATGCCAAAGCCAACCATGCTGCTGCTATGTCTGACGGAGGGCCTCCTCCTGACTGTGTCCTGCCAGGCACCTCTGGCCAGGAGCAGAGTCTGGAGACTAGGGACAGGGCAGAGGCTGAACCAGGAGCGGGTCAGGGAGAACTAGAACCACAGTGTCCAGACAACTCCAGGGGGGGAAAGAGGGCTGACGGGTATGGGCTAGATGCCAGTAAAAACAGAGGGACTGTGTCTGAGGTCCAGAGTCCCTCACCCTCTTCACTCCAAGCAGACCTGGAGTTCAGGGAGCCCCCGGAGGGGCAGCAAGGGAGGGGCGTGGCAGACGGGAGAGCCTCTGCCATTGACAACCCAGACACTCCCGGCCTCCATCCTGAGCCAACACAGCGGAGCCCTCTGTCCATGGCTGTGGGTTCACCTGAGGATGACTCCGGCCTTTCGCCCCGCACTTCACCTCCTCAGGCCCTGGGCCCCCAACACCCCTCCTCTCCAgcccctctcttctctgctccACATCCCGTTACTGAACAGTTTCCGGTTGAGCACATCCAGAGGATCCAGACAGCTGGCTTCTCTGCCAGGGAGGCTGCAGAggcactggaacaggcccagggCTGTGTGGAGCTGGCTCTGCTGGCTCTGCTGGCCCGCAAGATCACTGTGCCCACCTAGACACTCACGACATTACAATCATATGGGAGACCCAGGCTCTTGTCAACATGGGTTTCATGTGTACTCTTGTCTTATTGTTGATGGTGACATCTGAACCCCCCTGGCCTCGCAGCCACTACATGCTAAAGGGGAAATGCTTTTTGTCTCTTGGTTTCTCACAGACCATACAACAACTTATTTGTTCCTAGATTGAGCCAATATGATCGGAGTTGTGTTTGCATGCAGCAGTAGTTGGTGCCTATTTCATGGATTTTATAGATTGGTAGATTGATTTCcttaattcccccccccccccctcgtttaACCCTGTATATACGTATTTTATTCTAAACTCAATTGAACTGCCCCATTGACGAGACAATGTTGGTAAATGTTTACATTTGTATGTGAAATGGCATTTGTTTAAAGGGCTGAAGATGAACCTAAAATACTATGTTAAAATGTCCGATTTGTCAGCAGTATTATTGCTCCGCTAAACAAttaatttgtttttaaattgaTGTTTGATTTTAACTCCGATTCTGATAAAacccaccagacagttaacatatTACACTGTGGAAATGACTGCATTTAAGAAGCATTGCTAACTGCTGATCTTTTGTCTTTTTCTGCCGATTGTTAGCATTTTGTAATATGACATTCTCTCAGTCATATGATTATTGCCAATGCTGGGGAACCTGGGTGTTTTCATGTTTAAAACAGCTTGCACAAGAAAATAAATCAAGCAGCACTCTTTTTACTTTCAGCACGACTTTGTTGATAGAGGAACATCAACATAGCCAAGGAGTTAAGAGTATTGAATATTTCTGGGGATGCAGGTAAAGGATGAGGTCTTCAAATATAACAGCATGTATAACATCTTTGGAAATGTGATATGGTCATTAATAGAGGGGGTTTGGTAGTTCATGTTCACTTTGAGACATCTATCATACATGTAAAACTGGAAACCTCTCCCACAGTCCAAGTCTACCCTAGCCAGCTGTCAGATCATTCATTCATATATCCAttatcaactttttttttttttttaattgcattATCTGGATCATATTCATATACCAACAACATCGTGGCAGGTTTAATTATTTAGATTTGATCTTGTACTCAATTTAAACTCCCAAATAAAGTAAAACTGGTTCtttgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU693859 lncRNA upstream 7026 42847466 ~ 42847894 (+) True G609457
TU693848 lncRNA upstream 17660 42836851 ~ 42837260 (+) True G609449
TU693834 lncRNA upstream 32916 42821760 ~ 42822004 (+) True G609437
TU693829 lncRNA upstream 38363 42816238 ~ 42816557 (+) True G609432
TU693820 lncRNA upstream 52173 42802515 ~ 42802747 (+) True G609423
TU693892 lncRNA downstream 6346 42890026 ~ 42890568 (+) True G609489
TU693907 lncRNA downstream 32151 42915831 ~ 42916504 (+) True G609504
TU693889 lncRNA downstream 35538 42919218 ~ 42919522 (+) True G609486
TU693885 lncRNA downstream 36274 42919954 ~ 42922980 (+) True G609482
TU693915 lncRNA downstream 59051 42942731 ~ 42943096 (+) True G609511
XM_021609306.2 mRNA upstream 87524 42760386 ~ 42767396 (+) True gnat1
XM_036983267.1 mRNA upstream 95516 42685145 ~ 42759404 (+) False LOC110527789
XM_036983268.1 mRNA upstream 95516 42685145 ~ 42759404 (+) False LOC110527789
XM_036983269.1 mRNA upstream 95516 42685145 ~ 42759404 (+) False LOC110527789
XM_036983270.1 mRNA upstream 95516 42685145 ~ 42759404 (+) True LOC110527789
XM_021609316.2 mRNA downstream 39867 42923547 ~ 42930634 (+) True LOC110527799
XM_021609317.2 mRNA downstream 49303 42932983 ~ 42935248 (+) True rbp7b
XM_036983275.1 mRNA downstream 101980 42985660 ~ 42991364 (+) False LOC110527804
XM_036983276.1 mRNA downstream 101980 42985660 ~ 42991364 (+) False LOC110527804
XM_036983277.1 mRNA downstream 101980 42985660 ~ 42991364 (+) True LOC110527804
TU693833 other upstream 33675 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 1024112 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 1391751 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 2220481 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 2414288 40439100 ~ 40440632 (+) True LOC110527751
TU694950 other downstream 526711 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 700340 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 945324 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 1118944 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695458 other downstream 1138169 44021849 ~ 44028228 (+) True si:dkey-264d12.5

Expression Profile