RNA id: XM_036983272.1


Basic Information

Item Value
RNA id XM_036983272.1
length 4559
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110527798
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42891310 ~ 42911129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGTTTTGAGGGGTGGTGAGAAACTTAAGAGGACATTGTAAGACTAACAAAGCTCCTCTCATTCTTAGAGAATACATTGGGCTCTTATTGACAGAGGTGCTGCTGGATATGAAAGCTTCTGGGGGAGAGTTGGGCTGGTTGCCCTGGCCACATGAAGAAGGGtggGAGATAGTTCAGACAGTGGTGAACGGCTCCCTCCTGTACACCTACAGTGTGTGTAACATCGACGCGGGGGAGCAGGACAACTGGCTCCGAACCACCTTCATCCAGCGGCGCCCAGGGACCACCCGCGTCTCTGTGGAGCTGCGCTTTGTCATGCGGGACTGCAACACCTTCGACGGCGCCTCGCTCGCCTGCAAAGAGACcttcaacctgcacatgtccgaGGCCGATGCCGACGTGGGCACCATCTTCCGCAAGGGCCAGTTCCGCAAAGTGGCCACCATCGCGCCGGACGAAATCACGCGAGGCCGCGGGGCGCTGAAGGTCAACGTGGAGACACGGGCAGTGGCCCCTCTATCCAGGAAGGGCTTCTACCTGGCCTTTCAGGACATGGGAGCGTGCGTGGCACTGCTCTCCGTCAGAGTGTACTACAAGACGTGCCCGTCCACCGTGCAGAGCCTGGCCGCCTTCCCAGAGACGGTGGCGGACGCcctgagggaggtggagggaacATGTGTTGAGAACGCAGTGAGCCAGGCCACCCCACGCATCTACTGCACAGCTGAGGGAGAGTGGGTGGTGCCCGTGGGACAGTGCCAATGTCGCGCAGGATACGAAGCTGTTGGAGACTCCTGCCAAGCGTGTACGCCAGGCTCCTTTAAAGCGTCCTTGTTCAGTGAATCCTGTGAGGTTTGTCCGGAGAATACTGTGCCATCTACAGCCGGCGCCTCCCTGTGTCCATGTACGGAGGGATTCTACCGCTCCCCATCAGACCCTCTTACGTCAGCCTGCTCTGcCCCGCCCAGCGCCCCTCGTGACCTGGCCTCCACCACTCTGTCAGCGGACGGCAGGCTGCAGCTGTCCTGGAGCCCGCCGCTGGTGACAGGAGGCCGCCGGGACATTTGCTACAGCGTGGTGTGCGAGCGCTGCGCCGGGGCCCTGTGTGTGCCGTGTGGGGAGAAGGTCCGCTTTCAGCCCGACCCCACGGACCTCCAGGACACCGTGGTGACAGTCAGCGAGCTGGAGCCCCATCTCAACTACACGTTCACTGTAGAGGCCCGCAGCGGAGTGTCTCAGTACAGCAGCCAGAGACCCAGCAGCACCATCACCACCGCTCTGCACTTCACTGATCCCCCCAAGGTGACGTCCATCCGTCTGGACGAGCGAAGCACCaccagtctgtctctgtcctgggcTCTGTCCCGCCGAGCACCATCCCACGTCAACCACCGCTATGAACTCATGTACCGCAGGAAGGAGGACGACAGTGAGCGTGATGTCACCACATACACAGTTCTGGTTCTTGAGAAGAGTTTGGTGCAGATCAGTGACCTCTCCCCTGGCACGGCCTACATGTTCAGAGTCCAGGCTCTTAGCCCAGAGGGGAAACCAGGGAGTTACAGCATGGAGCATGAGTTCAAGACCCTGCCCATGGCGGAGTCTCAGATCCAGAGCAACTCCACGGTGGTCATGGGAGctgtagtaggaggaggaatcATGCTGCTGGTTGTTGTAGTCGTTCTACTACTACACAAACGGAGACTGAACTTCCGTCACCGACAGCGATCAGAGGACCCCTACTTCTCCAGTTCAGATCAACTGAAGCCCCTGAAGACCTACGTTGACCCACACACGTACGAGGACCCCAACACGGCTATCCTGAAGTTTGCCAGCGAGATTAATCCCAGTCTGGTCAATAAGCAAAAAGTCATTGGAGCCGGTGAGTTCGGTGAGGTGTACCGCGGTCTGATGAAGGctccagggagaggagaggtggcggTGGCCATCAAGACGTTGAAGCCAGGCTACACAGAGAAGCAGAGGCAGGACTTCCTAAGTGAAGCCAGCATCATGGGCCAGTTCTCCCACCAGAACATAATTCGCCTGGAGGGAGTCGTCACCAAGTCAGTCAAGCATGCCATGATTGTGACGGAATACATGGAGAATGGGGCACTTGACAACTATCTAAAGGACCACGATGGGGAGATTTCCTCGTACCAGCTGGTGGGCATGCTGCGTGGCATCGCGGCGGGCATGAAGTACCTCTCTGACATGAGCTACGTGCACCGAGACCTGGCTGCCCGCAACGTTCTGGTCAACAGCAACCTGGAGTGCAAGGTGTCTGACTTCGGCCTGTCCCGCGTGCTGGAAGACGATCCCGAGGGCACCTACACCACCAGCGGAGGGAAGATCCCCATCCGCTGGACCGCCCCTGAGGCCATCGCCTACAGGAAGTTCACCTCGGCCAGCGACGTATGGAGCTTCGGCATCGTCATGTGGGAAGTCATGGCCTTCGGAGAGCGACCCTACTGGGACATGAGTAACCATGAGgtgATGAAGGCAATTAACGAGGCCTTCCGGCTGCCTGCGCCAATGGACTGTCCATCCACCGTTTACCAGCTAATGCTGCAGTGTTGGCTCCAGGATCGCTCCAAACGACCCCGGTTCCCTGACATCGTTAACATCCTGGACAAACTGCTCCGGAGCCCAGAGTCTCTGAAAACCATCGCTGACTTTGATCCCCGTGTGTCCATCCGCCTCCCCAGCACCAGTGGCTGTGACGGCTCCCCCTTCAGGTCTGTGCCGGAATGGCTGGAGTCCATCAAGATGAGCCAGTACACTGAGAGCTTTGCCTGCGCTGGAATCACAACCATGGAGCAGGTGCTGGCCATGAAGCATGATGACATCAGGAACATTGGCGTGAGGTTACCAGGTCACATGAAGAGAATCGCCTACAGCATCCTTGGACTTAAAGACCAGATCAGCTCACTTAGTGCTTGCAGTACAGTGTTTGCCGTGTGAGACCCCCCCCAGCCTGAGATTCCCCAGAATAGGACTGCACTGAACATCTCATTTCACTGTCACACTTAATGGAGCAAGTTGGGTTGAGCATGGGTGTACTAATGTCAGAACTACGCTGCTTTAGACTGATCAGCGGCATGATTGAAAAGGACCccgccagccagccaatcagaaatGGCGTGTAAAAACGTTGAAGTACCCCATGACAAGAGACACTGAGACATCTGGTTACAGGTTACAGAAAAAGTCATGTATCAAGAACGTTTTATATAATCAAGTGTGGAAATACTGTATAATGGCAGTTAGGAAACCACAGCCTTTTGAAATGGCCGTGTGATGACTCGGGAACAGGAAGGATGGCCCCACTTTGTATTTTTCTCTGAACTCGAAGTCTGGCAAACAAGAGACATTCAAGCTAAGGCATTCCAGGACCAGGGCTCCCTCCTCCTCAAGCAGTCACTTATTCCACCAGTGACTTCTGGACTCATATTAGTTTTTTTTATAAAGATTTGAGGCTCTGAAATAACAGATGGATAGATGAGAATGCCTGTCTGCTCAAAATGACAGGTTTATTGGTCTTTGGAATATTTCCGCTCAGGGCAAGAGATCCGATACTCTTTATCTTTTCCGTTTGATTTTATAGGTTCCATTCCGACCGCAATCCACCTCATATACTTTTCTCTTACATTTTCAAAtcgtttttttttcatttttcattcattTCTCTAGTTTACAGTTTGCCTCCATCTAGTCTTATAGTGGTTCTTCCATTATTATttaatatttattgtattttgtatttattatatttgttttattaaaaAAAGACACTGATCTGGCACATGTttgtaaatatgtatttttcaGTCCAACAACATCAGCGTTGCCTTGGGACTGAATCGCTTGTCTGAATTCAATCAACGAGCAGAAAATACATTTTGGTACATGAAACACGTTAAAAAGAGGCAAGAATGTTTGATTGAAATAGATGAATTGAAATTGAGTTTTCCTTGACACCCACCCTCCAAATCAAAGTTGGTTGTGTGCACAGTTTACCAGATGTTATAGCAGGTGCAGTGCAATGCTTGTTTGACTAGCTCCTAACAGTGCGGTAAAACgtcaaacaagcacacacataaTCCAGAACTAAAATCAAGAAACGTCAGAATGAATCCAATTAACAATCTCAAATAACACAGTTAGCTAATACGGTTGTCGAAGCAGAGTCCGCTTCGATGTCAATTGGTGACTGTACCATGGTAGTCTGAAATGTCACATCTCCACTCTACTGTACTTCATCAAATATGCATCACGGGCTACTGAGCCCCTGCTACATTCCCTGTATCTGGGGCTTCGCGTTCATTCCTCTTCAATGAACAATTGACTCATCATTTTGAGTTGGACAACAATTATAGAACGTTTCTAAATGTAATACTTATTATTAACACATAGTGTGTTTATCCATTTCAACGTTTCACATCCACCATGTTTATGTTGCATgaatctacagtggggcaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcaca

Function

GO: NA

KEGG:

id description
K05103 EPHA2, ECK; Eph receptor A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU694572 lncRNA downstream 883 42890127 ~ 42890427 (-) True G610084
TU694535 lncRNA downstream 38529 42852442 ~ 42852781 (-) True G610058
TU694525 lncRNA downstream 50023 42841058 ~ 42841287 (-) True G610049
TU694522 lncRNA downstream 57040 42833577 ~ 42834270 (-) True G610046
TU694516 lncRNA downstream 62381 42828689 ~ 42828929 (-) True G610040
TU694581 lncRNA upstream 1965 42913094 ~ 42913334 (-) True G610093
TU694584 lncRNA upstream 5160 42916289 ~ 42916538 (-) True G610096
TU694587 lncRNA upstream 8084 42919213 ~ 42919535 (-) True G610099
TU694589 lncRNA upstream 24402 42935531 ~ 42935770 (-) True G610101
TU694590 lncRNA upstream 24827 42935956 ~ 42936258 (-) True G610102
XM_021609312.2 mRNA downstream 1818 42888618 ~ 42889492 (-) True LOC110527797
XM_021609311.2 mRNA downstream 4084 42884956 ~ 42887226 (-) True cplane2
XM_021609308.2 mRNA downstream 45502 42842713 ~ 42845808 (-) True si:ch73-361p23.3
XM_036984482.1 mRNA downstream 76273 42805342 ~ 42815037 (-) True LOC110527110
XM_021608268.2 mRNA downstream 83222 42805342 ~ 42808088 (-) False LOC110527110
XM_036983273.1 mRNA upstream 18120 42929249 ~ 42933032 (-) True LOC110527801
XM_036983274.1 mRNA upstream 34068 42945197 ~ 42952276 (-) False LOC110527802
XR_005052581.1 mRNA upstream 34068 42945197 ~ 42952276 (-) True LOC110527802
XM_021609319.2 mRNA upstream 49290 42960419 ~ 42982836 (-) True LOC110527803
XM_036983278.1 mRNA upstream 80318 42991447 ~ 43001734 (-) False LOC110527805
TU694523 other downstream 55241 42835747 ~ 42836069 (-) True G610047
TU693245 other downstream 865606 41968569 ~ 42025704 (-) True G608900
TU693231 other downstream 940066 41944571 ~ 41951244 (-) True G608888
TU692189 other downstream 1542411 41156670 ~ 41348899 (-) True LOC110527764
TU694690 other upstream 195998 43107127 ~ 43162969 (-) False G610182
TU694686 other upstream 197479 43108608 ~ 43112038 (-) False G610182
TU694702 other upstream 202019 43113148 ~ 43116144 (-) True G610190
TU694694 other upstream 216682 43127811 ~ 43149026 (-) False G610183
TU694691 other upstream 236371 43147500 ~ 43167320 (-) True G610183

Expression Profile