RNA id: XM_036983278.1


Basic Information

Item Value
RNA id XM_036983278.1
length 4479
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110527805
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42991447 ~ 43001777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAAAGTATGCAATGTTCATATATGCTGCAGCTCCAACCCCCATCAAACTTCAACTGGGGTATTCGTGACCAAACGGGGATACGGCAGACAAACGTAAGggatcacacacaaacagagtgagatagaggaaaggagggaggggaagagggagagaaagaaagagggaagaaagTAAGGAGGCAGTGTCAGTTTATTCCAAGGTAAACTTTATTAAAGGCGACTGTCTGTAATAGAAGGACATTTTAagaataatatacacactgaaTAGTAGGCTAAACTGTCCTGCAATTCCATTGCGGTTTTTATTAAGTAGGCTGACAGGAAAACCAACTGGTGGGAGCAAGGTACCAATCACGGCTAAGTCtgcccctccctaaccctctccccTGAGGCCTGAGCTCTGGGCATCCAAGCCCACACCCCCATTTCACTTCGCTGGTGGACAGACACAGGGATGAGCAACAGTGGGACCAAGGAGCCGTCACCACAGCCAGGAGTGGCCCAATCACCTGCCTCCACACCTCCACGCAGGGGCCGGGGACGCCCACGGAAACAACAGCAGGAGCCCACTGGCCCCCCAACCCCAAAGAGACCCAGAGGACGACCCAGAGGAAGCAAGAACAAGGGGCCTCGTGCCACCCCCAAGGAAGTAGAGCCAGTCGGGGAGAGAAGACCTCGGGGCCGGCCAAGGAAATGGCCCCAGAAAGTAGTTCAAGAGGTGATCCAGGAACAGCAGAGTCCTTCAGAAGAAACTGAGGGCCCCTCACAGTCTCTGTCCGCTGAGGCTTCGCCATCTCAGGCTCCAGCCCAGGAAGTGGCAGAGGGGGAGTAGACAATGTGCCACAAAACTACCTCAAGGTTTGGGCAGAGACAAAGAGGTGTACAATCTAACCTCCATTGTCATGAGGATTCCAAAAACAACAGATAATAGCCCTGCTTTGTAGAACAGTAGGCCTGATGGTGGTATTGTGACTGGAGTCTGTCCAGCACTGAGGCTGGGTCAATGATGGACATAGCTTTGGTCAGTTGATTGATTACTTAGGATTCGGTCAGTGGGTGGGGCTGTTCACTGATTGGTTgacgtgtgcgtgtgcatgcgtgcgtgtgtgtatgcgtttgTGGTGTTAATGGTGGGGAGggtttaaaaatacaaataaaagatgCAGTTGCTGTCATCAAATGTGACTGACATTTCAAAACACATTACCTGGACAAAATTCATGACCCATTTGACCCTATTGTCACACAGGAGCTCGGCTCAAACGTAATTGTCTGTCCTGATTGTGAAGAAACACAGGGATATTTTGTTAGATATACGTTGGAATGGGAATACATGATCGTGAACAGAATTCAGAAGTCTGAACTCAACAGTGACATGACTTCACATCACACATCAGGTTTTGTTTTTACTACATTGCTCTAACCACACTCAATAAAACCTTAGGGGGCCATACTTGCGAACGTTAGAACAAGTTTTTGTTCAAGCTTAAGCATCTGCCAATTTAAATTGTTGACATAGTTGGATATGATCAAATGCTACACGTTGGCTGTTCCCATTAAATAACCTGGCACAtttagccctatgctaacctcACCAGGTGGCAGTGATTATTTCCTGTAACAAATCCTGCATCTGCCTATCAAAGATCTTAAACTTTTTCTACACAAACCAATGGCATTTCTTAAAATATATGCCCAGAGGGATATATTTAAACCTCCTGGTGGAGCGCTGTTCTGGCACTGGCAGCACTACACCCCATGAGTAGCAGTAGCCTACGTGTCGGTCTGCAAGAGGGACACCAAAAAGTTCCTCATTAAAGATATTTGTAAATCTTAATTTACAAGGTTCTGGCTGCACTACACACTATCACAATAAATGTCATTCTTTCATTTCAAAGGAAAAAACATTATCTCCCCTGGGATTCAAGCTTGCCGCAAACGGCAAATGGTACCAGGAACCAGGCTGGCGACACTGTGAGCTAATTGTCCACTTGAGGTTGCTTGTGTTGATCCAGCAACTTTGAATAGCAGATCCTGCCATTTGACTTCTGTTAAGGGCGCTTCCATGGACAAGTGTTGGATAATGTCCAAATACGTATTTTGATTAGCTGATACAGAATTTCAACCAGatataaatacacatatataCAGCCACCTGGTGAGCTTAGCATGTGTCAGGTTATGTAATGGGAACAGCTAACATGTAGCCTTTGATCACGTACAACTACATCAAcgattttaattggctgatgcTTAAACTAAAACTTCAACCTGTTCTATTGTTCACAAGTATGGCCCCCGGGTATTGTTTGACTTAATATGGCTATGTGCATAGCTATTCAGGTGTGATTCATGTGTTATTCTACTCAGTTATGATATTATTCCATTTTTATTGTGTATTTCTGATCTGTTTTTGACATTCACAATATTACTTGACACACATAAACCTCATTAAGACCATAACTCACCTCAGTTCCTTTGCCTTTCAGTCTACCTCAGTCACAGAAAAGCAGAGAACTCTTTATAGCCTCTCCCCAtaccaaaaaaaacaaacaaagacacacacacacacacacacacacacacacacacacacacacacacacctactcaggACAATCCCATACACACTGTACCCACTAGCCTCACACTCTCACTTCCACTTCCATGCTGACTGACTCTTTAAGCGGGTCCCAGCAGCAGCCTTTAGTGGTAATGCTCTGATGAAATATCTGAGATAAGACTTGGGTCTAGATTCTATCAGATCCGTGCTAGATTCACATTGCGGTTGTTTTTGGAGGTGGAACtgcgttggagctgtcaaatccacaagcggctccCTGAGTTACCTTATCGCGGACACTGCCATTAGATGGAACGAAACCACACCCGACATTATATCCAACAGATCTATCATGGATCATTTCTATCATGGATAGAGCCTACACTTTCTATCGCCTTTTTGGGCTAACGCAGGGATAGGGATAATAAGGAAGGGAAGGGTTGGTGACACACATGATTAGTTAGCTCCTACCGTAGTAATACTGGACCTCTAACACTGCCAAAACATCCCCTATGCGGATGTCGGCTAACGTGGGGTAACACTCGATCTGATTGAATCGAGGCCTTGGTCTATCTACCTGGGTTCAAAATGACCCAATATTTTACTGTTTACTGTAGTTGGTTACTTACTCATGACTTTCTTTTTTATTGTTTTATCACGACCTCTGTGAGCCCTTACATTTTTCCCTCTCTTCACTTTTTACGTAAGATACCATGCGATCATTACTTCATTTCAAGCTTTCACTTTCACACTACAGATGTGTTGCATTAACAATCCTAACATTAGTTGAACTGATGTCAGTGAAGTGACGTGAAATAGTGAGTTAACACTTTGTTTTGGATCTTACTGTAATGTATTTCTGGAGTGCGTGGACTTATCCACGTGCAATCTTTTTCTAGGGAAGGTTCAAGCGTTTAGTTTTCTGTCAGTTGCAAGTTAGTATGTCTGTGAGTCTTTTCCAACCTATACTTTTTCTCTTGTTACTTCACCTCTTTGGATGGCATCACTGTTTGCGCTGTGGACTACCTCTGAAACTAGTCTGCTTTGGCCCTCAGAGGGGTGACTGGCTGGTTTTAGCTTTGCTTGTCCCCTGCAGTCTTACCATAGCTATGGGACAACTATATCAGAGGTCCACTCACCTCACTTTGTCCGTAAcagcatactgtatatagatgtaggatcttaattttatCATATTTTTGTTGCTGAGATTTTTTCCTGCACTGCAAACTTGTAGTATATGAGATTGAAAAAGGCTTCTAAGGTTGTgaattccactttgaaatttcagacttgatttgccctaatgaaaaatgtatcaaacctTACAAAAatgtaatccacataataattcacatttcttgttgctgcaggattatgtttctgctgtagcaaactggatcaaattaagatcctacatctgtaggtaaATAAACCCAAAGTACTGTACTATGATGTCAGTAAGAGTGCCTCCTAACCTAACCACAGTCATACCTCAGCAATGTCAGGATAGCCACTATCTATATTTTAATCACAGTGTTGCTCTAAATGAGCTGACTGATATTGATATATTCAGTATAAATATTTTAGGAGTTTATTTCATGTACTTGTTGTTATGCTTTATgtatgagtttaaaaaaaatattgaatagaGTAGTTAGGTTTTCTTATCTTGTAACATCTCCAGTTGTAATCTTTTTTTGTGTTTGCGATCGATGAAAAGGTCTCCCTTTTTTATTTTAGTCTTTCATATATTGTTTGATTTATTTTAGATTTCAATCCATTTGAACTTGAATACACAACTCAAATGGCTGTTTTCTAATTTGACTCTGATCTGTCTCGCTTCATTGTGTGTTTGCATGAGTTTAGAGGTGCTACTTGGTCTTTCTGTTACCAATAAAAAGGTTCACATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU694620 lncRNA downstream 5964 42984725 ~ 42985483 (-) True G610132
TU694597 lncRNA downstream 48922 42942126 ~ 42942525 (-) True G610109
TU694591 lncRNA downstream 54826 42936397 ~ 42936621 (-) True G610103
TU694590 lncRNA downstream 55189 42935956 ~ 42936258 (-) True G610102
TU694589 lncRNA downstream 55677 42935531 ~ 42935770 (-) True G610101
TU694676 lncRNA upstream 104296 43106030 ~ 43122712 (-) False G610180
TU694679 lncRNA upstream 109119 43110853 ~ 43114307 (-) False G610182
TU694677 lncRNA upstream 116190 43117924 ~ 43122712 (-) True G610180
TU694767 lncRNA upstream 241465 43243199 ~ 43243449 (-) True G610254
TU694870 lncRNA upstream 352068 43353802 ~ 43354039 (-) True G610356
XM_021609319.2 mRNA downstream 8611 42960419 ~ 42982836 (-) True LOC110527803
XM_036983274.1 mRNA downstream 39171 42945197 ~ 42952276 (-) False LOC110527802
XR_005052581.1 mRNA downstream 39171 42945197 ~ 42952276 (-) True LOC110527802
XM_036983273.1 mRNA downstream 58415 42929249 ~ 42933032 (-) True LOC110527801
XM_036983272.1 mRNA downstream 80318 42891310 ~ 42911129 (-) True LOC110527798
XM_036983284.1 mRNA upstream 1580 43003314 ~ 43027816 (-) True LOC110527807
XM_036983282.1 mRNA upstream 32908 43034642 ~ 43329566 (-) False LOC110527806
XM_036983280.1 mRNA upstream 32908 43034642 ~ 43329567 (-) False LOC110527806
XM_036983281.1 mRNA upstream 32908 43034642 ~ 43329567 (-) False LOC110527806
XM_036983283.1 mRNA upstream 32908 43034642 ~ 43329567 (-) True LOC110527806
TU694523 other downstream 155378 42835747 ~ 42836069 (-) True G610047
TU693245 other downstream 965743 41968569 ~ 42025704 (-) True G608900
TU693231 other downstream 1040203 41944571 ~ 41951244 (-) True G608888
TU692189 other downstream 1642548 41156670 ~ 41348899 (-) True LOC110527764
TU694690 other upstream 105393 43107127 ~ 43162969 (-) False G610182
TU694686 other upstream 106874 43108608 ~ 43112038 (-) False G610182
TU694702 other upstream 111414 43113148 ~ 43116144 (-) True G610190
TU694694 other upstream 126077 43127811 ~ 43149026 (-) False G610183
TU694691 other upstream 145766 43147500 ~ 43167320 (-) True G610183

Expression Profile