RNA id: XM_036983284.1


Basic Information

Item Value
RNA id XM_036983284.1
length 2605
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110527807
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43003314 ~ 43027816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGGGTGGACGGGATGCAGTCATTACATTCACACTTATTTTGTAACTCTGGCTTTTCCCGTCCAAAAAAACACCacaatatatctttttttttttataggctTCTTAATTGTTCACCTTGCTCTAGTCTAGCCTAATCAATTTCGTAAAAACACGCCAGCCAGAGGAACTCCAGAATTGTCAAAAACATTATTAAGTCCTTGGATCTGCTTCCATCCAGCACTGGTCTGTCTTATTCTCTTCTGTAACCATGAAACTCATTATTTCCTGTGTTCTCCTGGCATTTTGGAGGGGATTGGTCAGTGGGTCCCGCAGTCCTCTGAATGACTTCCAGCGTTCTGAGGGAAGGGAGCTTGTTCCGACCTCCTGGAACTCTGCACGGGTGCTGATGCTGCCAGGGCTGACGCTGGAGGACTGTGCCAGACGCtgttcacacacactggactgcaGAGCCTTCAACTACGAGACGCGCCGCTCCATCACCTGTAAACAGCTGCCATGGGTGGAGGATGGCAGCAACGCAGAGGTCAAGAGGAACGTCAACTGTGACCTGTATGAGAAGAAGGTGTACGTAAGGAAGTGCATTGTGGGTAAAGGAGAAGACTATCGAGGCAAGGTGTTCACGACGAAAAATGGCCATACTTGTCAACAGTGGTGGTCAAAGTTCCCACACGATCACAGATGGACACCCACAGCCACTAATGGTTTGGAGCTGAACTACTGCAGGAACCCAGATAGGGACCCCATCGGGCCATGGTGCTACACCAATGACCCAGAACGCCGCTATGAGAGCTGCAATATCCCCCACTGCAAAGACgAGGTGTGTATCACATGTAACGGGGAAGACTACAGGGGCCAGGTTGACCACACAGTGAGTGGCAGAGAGTGTCAACGTTGGGACCAGCAGTACCCACAACAACACATCTATCAGCCTGAGAAGTATCCAGATAAGAGCTTGGATGATAACTACTGCCGTAACCCAGACTCCTCCCCTGTTCCTTGGTGCTACACCACAGACcctgatatggagagagagagttgccaGATCAGCAAGTGCCCTGCGGTTCCAAAGAGACACCTCCGGTCCAGCTACACCACAAACTGTTTCCGTGGTCGCGGGGAGGATTACCGTGGCAAAGTGAACGAGACGACCGGCGGTATTGCCTGTCAGCGGTGGGACTCCCAGTACCCTCACGAGCACCCCTTCTACCCAAACACCTACGAATGCAAGGGCTTGGAAGAGAACTACTGTCGTAACCCAGATGGATCCGAGGCTCCCTGGTGCTTCACGTCTGTGCCTGAGATGAGGACGGCTCTCTGCTTGCATATCAAACGCTGTGCAGACGACATCGAAGCTGAGGATTGCTACCATGAAAATGGTAAAAACTACAGGGGTGTGGTCCGAAAGACGCGGAAGGGCGTCACCTGCCAGAAGTGGAGTGTCAACATGCCTCACAAAACAAAGATAAACCCAGGGACCCACCCTGAGGGCAACCTGACAGAGAACTACTGCCGGAACCCAGATGGGGACCAACACGGACCCTGGTGCTACACCACTGACCCCAAAACAGAGTTTGACTACTGCGCCATCAAGCAGTGCGCTGGGGAGAAAGTGTCCATCATTGAGCCAGCCGAGAAAGTGGAGTTTAATGAGTGTGGGAAGAGAGATGATCGTTTCGTCAAGAGCATACTCCGTATTGTTGGTGGGCGTCCTGGAAACTCTCCCTGGACAGTCAGCCTCAGAGACAGGAAAGGAAACCATTTCTGTGGAGGCTCCCTGGTTAGCTCAAAATGGGTGATCAGCACTAAGCAGTGTTTCTCCTCTTGTTATGTGGACCTTCCAGGGTACTCTGCCATGATGGGGACTTTGTTCCGTAACCCCAGTGAAGGCGAGCCCGACCGACAGACTATCCCTCTCACCAAGATCGTCTGTGGACCCTCTGAGTCCCAGCTTGTCATGCTACAACTGGAATActCAGCCCAGTTTAATGAGCGTGTGTCTCAGATCTGCCTGCCTCCCGAACGCTACATAGTTCGAAACGGAACCTACTGCGAGATCGCAGGCTGGGGGGAAACTAAAGGCACTTCTACAGATGACTCTGTGCTCAATGTGGCTCAAATACCAGTTATAAGCAACAAGGACTGTAACAAATACTTTCGGGGTCGTGTTCGGGAGAACGAGATGTGCACCAACTCCTTCCAGGGCGGGGTGGGTGCCTGTGAGAGAGACTATGGGGGACCTCTGGCCTGTCAGAACAGTGACTGCTGGGTGCTGGAAGGCGTGATCATCCCCATGAGGCGCTGTGGACACCCAGGCCAGCCCAGCATCTTCATCCGCGTCTCCATCTATGTGGACTGGATTAAGAAGGTCATGGAGATGGCTTAGTAACAGATACAGTATGTCACCAACCAGTGACTGGCCCTATGTTCTAATGGACAACTTTCAACCCCTCTACCCATAGCGCACAATCCACAACGGCCTAATTGTTATCCGTGACCATCTACATAGAATTGTTGTAATATCTGTCATTATGTCCATAATACTCTGTTGTTGTGTAGTATTCTATGTTGTTATGACACAAATATAAGATGTAAATAACCCTG

Function

GO: NA

KEGG:

id description
K23441 MST1; hepatocyte growth factor-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU694620 lncRNA downstream 17831 42984725 ~ 42985483 (-) True G610132
TU694597 lncRNA downstream 60789 42942126 ~ 42942525 (-) True G610109
TU694591 lncRNA downstream 66693 42936397 ~ 42936621 (-) True G610103
TU694590 lncRNA downstream 67056 42935956 ~ 42936258 (-) True G610102
TU694589 lncRNA downstream 67544 42935531 ~ 42935770 (-) True G610101
TU694676 lncRNA upstream 78214 43106030 ~ 43122712 (-) False G610180
TU694679 lncRNA upstream 83037 43110853 ~ 43114307 (-) False G610182
TU694677 lncRNA upstream 90108 43117924 ~ 43122712 (-) True G610180
TU694767 lncRNA upstream 215383 43243199 ~ 43243449 (-) True G610254
TU694870 lncRNA upstream 325986 43353802 ~ 43354039 (-) True G610356
XM_036983279.1 mRNA downstream 1537 42991447 ~ 43001777 (-) True LOC110527805
XM_036983278.1 mRNA downstream 1580 42991447 ~ 43001734 (-) False LOC110527805
XM_021609319.2 mRNA downstream 20478 42960419 ~ 42982836 (-) True LOC110527803
XM_036983274.1 mRNA downstream 51038 42945197 ~ 42952276 (-) False LOC110527802
XR_005052581.1 mRNA downstream 51038 42945197 ~ 42952276 (-) True LOC110527802
XM_036983282.1 mRNA upstream 6826 43034642 ~ 43329566 (-) False LOC110527806
XM_036983280.1 mRNA upstream 6826 43034642 ~ 43329567 (-) False LOC110527806
XM_036983281.1 mRNA upstream 6826 43034642 ~ 43329567 (-) False LOC110527806
XM_036983283.1 mRNA upstream 6826 43034642 ~ 43329567 (-) True LOC110527806
XM_021609333.2 mRNA upstream 400563 43428379 ~ 43433682 (-) True LOC110527809
TU694523 other downstream 167245 42835747 ~ 42836069 (-) True G610047
TU693245 other downstream 977610 41968569 ~ 42025704 (-) True G608900
TU693231 other downstream 1052070 41944571 ~ 41951244 (-) True G608888
TU692189 other downstream 1654415 41156670 ~ 41348899 (-) True LOC110527764
TU694690 other upstream 79311 43107127 ~ 43162969 (-) False G610182
TU694686 other upstream 80792 43108608 ~ 43112038 (-) False G610182
TU694702 other upstream 85332 43113148 ~ 43116144 (-) True G610190
TU694694 other upstream 99995 43127811 ~ 43149026 (-) False G610183
TU694691 other upstream 119684 43147500 ~ 43167320 (-) True G610183

Expression Profile