RNA id: XM_021609332.2


Basic Information

Item Value
RNA id XM_021609332.2
length 1678
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110527808
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43027924 ~ 43035211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTCTATTTATGAGGCCCGGCAATACGCCTGATCACCACTGGACGTCAGTAGATTCCAGGTTGAAACTACAGTAGACTGTTTTTCCGTTGAAAAGTGAAACTATCAAGAAAACTTAGTTCAGACAGAAGTTTCTCAGACGGCGTGAagGATGTGTGCTGCTAAAATGACAGAAGGGAGCGTGCATGTGGAATCCTGCAAGGCCCCTATGTTTTACAGACAAGCTGAACCGGCCACAGGTGAAGTACATCTGTCTGTCCTGCTTCTGCACGGCATCCGTTTCTCATCTGAGAACTGGCTCAATATAGGAACACTGGAGACATTGGCCAAAGCTGGCTGTCGTGCAGTGGCCATCGACCTACCAGGTTTTGGCCAATCTAAGTCAGCAGTAGCCCCCTCTGCTGTAGGAGAGCTGGCCCCTGGTGGGTTCCTGAAACAGGTGTGTGAGGCACTGGGGATGGGGCCAGTGGTTGTGGTCAGTCCCTCCCTGAGTGGCATGTACTCCCTGCCCTTCCTCTTCCAGCACGAGGCTCTGGTCCGGGCTTACATCCCGGTGGCTCCCATCTGCACTGAGAAATTCACAGCAGAACAGTACAGCagcatacagACTCCATCTTTGATTGTCTATGGAGACCAGGATGCTCAGCTTGGAGAGGTTTCTCTGAACAACCTGAGGAGCCTGGCTAATCACAAGGTTGCGGTGATGAAAGGAGCAGGACATCCGTGCTACCTGGACGACCCGGCCACGTGGCACAGAGCTCTCACTGACTTTCTCAATACGTTGTGATGTTGTTCAGTGTCTTTGGGATATCTGTCCATGGATGCAGCACTATACGGCCATTCTTAATCCAACACTCCCAGCATTTAGTTATATAAACCAAAttgatactgtatgtttgttaattTGTCAAAAGCTAGTTtagattataatttttttaaatcaaagacTAGCGTGTGGTGTTTTGGAGACCTGTAACTGTGGTTCAGTACAATGCTCTTGCTGATATACTGTacttgtactgtgtgtgtgtgtgtggcctataCAGGATGTATGTACCTGACATGAGTCCTGGTATTACAAATGCAAAAACAAACACCACACAATGAAATGAAGTGAAAAATATGAACATTATTTAATaactgattctctgtaataaacaATTTGAAAATATTTTACAAGGAGTCACAGACACAATATTTTACAAATTTtgccctcttcttcttcttctttttttttagctTCATCAGTACAAAAGAATGGAGCGATGTGGACCAAtgcccagagagagggagctaaatcttccacgcacacacatacactcacacacaccaaaaatcaaatcaaaaacgGTTGATTTCAGATCTCAAACTTATCTTCACTTTATTCCTATTTTTTACTTCACTTAAAATTTGACAGattttactattttttttttcttttttgatatatatatatatattttacacatTTGGCAAACATGGTCACATAGCACCAGACTACAGAATCACATACGCGTCTTTCCCACAGAGACGCACCTACACGGACACAGCAAGGGTAAGGAAGGGCAGGGGAGGAGCCACGTGAAGACCCTCCCTTTGAGGCTGGCCGTAAAGTACACCACTTCCTCTCACCCCAAGCTgttcctattttttttatttttttgtgggggggggggggg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13706 ABHD14; abhydrolase domain-containing protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU693936 lncRNA upstream 7024 43017894 ~ 43020900 (+) True G609532
TU693937 lncRNA upstream 13262 43009544 ~ 43014662 (+) True G609533
TU693887 lncRNA upstream 32742 42991450 ~ 42995182 (+) True G609484
TU693890 lncRNA upstream 43779 42983706 ~ 42984145 (+) True G609487
TU693909 lncRNA upstream 65829 42960420 ~ 42962095 (+) True G609506
TU693947 lncRNA downstream 12666 43047877 ~ 43049711 (+) False G609542
TU693948 lncRNA downstream 13890 43049101 ~ 43049711 (+) True G609542
TU693993 lncRNA downstream 71704 43106915 ~ 43167294 (+) False G609573
TU693999 lncRNA downstream 71704 43106915 ~ 43122709 (+) False G609573
TU694014 lncRNA downstream 71704 43106915 ~ 43164196 (+) False G609573
XM_036983275.1 mRNA upstream 36560 42985660 ~ 42991364 (+) False LOC110527804
XM_036983276.1 mRNA upstream 36560 42985660 ~ 42991364 (+) False LOC110527804
XM_036983277.1 mRNA upstream 36560 42985660 ~ 42991364 (+) True LOC110527804
XM_021609317.2 mRNA upstream 92676 42932983 ~ 42935248 (+) True rbp7b
XM_021609316.2 mRNA upstream 97290 42923547 ~ 42930634 (+) True LOC110527799
LOC110527818 mRNA downstream 489476 43524687 ~ 43526668 (+) True LOC110527818
LOC110528952 mRNA downstream 491720 43526931 ~ 43529047 (+) True LOC110528952
XM_036983289.1 mRNA downstream 501786 43536997 ~ 43545817 (+) False mon1bb
XM_036983288.1 mRNA downstream 503372 43538583 ~ 43545817 (+) False mon1bb
XM_036983290.1 mRNA downstream 503443 43538654 ~ 43545817 (+) False mon1bb
TU693833 other upstream 206679 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 1197116 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 1564755 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 2393485 40634181 ~ 40634439 (+) True G606977
TU690810 other upstream 2587292 40439100 ~ 40440632 (+) True LOC110527751
TU694950 other downstream 375180 43410391 ~ 43410806 (+) True G610436
TU695128 other downstream 548809 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 793793 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 967413 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695458 other downstream 986638 44021849 ~ 44028228 (+) True si:dkey-264d12.5

Expression Profile