RNA id: XM_021609333.2


Basic Information

Item Value
RNA id XM_021609333.2
length 2622
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110527809
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43428379 ~ 43433682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACTCGCACTAGGGAGGATTTGTTTAAAATTAACCCACTAGGGTAGGAATAGGCGTTGGGTGCAACTGAATTGACACCAGTACAGGGGGGTACGGTACATTCACTGTCGGTTCAAGTTGTAAAGTACAGTAATAATACATTCAAGTGACCAATGAAGTACCAGTGTTTTTACCTATTGTTGCAGGGATCACTTAACCAGGTAGTTATTGGGAGAAGTTTGTTTCAATCACCTTTCTCCATCTTGAAAGACAAACGTGGCTTAATTGGAATATAGGGGTCTCTAGTATTTGGGTATGCTTCCTCATTCTGCTGTACAAGgacaggagagcagagagtaaAAAACACATTCATTCACCACAAAAGTCATGTTGTACTGGACTGCACTGCCTGATTGGAAAGTATTGCTGTTGGTGACACTTCTATGGGACTACCTCTGTGCTGAGGAACTGAAACCCACGAGATGGCCACTGTATCCCCAAAAGCCTCTGGTCATGGCCTGGAATGCTCCGACGGAGGACTGCGGCCCGCGGCACGGTATTCACTTTCAGCTGGAGCAGTTCCAGATTGTGGCATCGCCCAGCAAGGGCTTTGTCCGCCAAAACCTCACCATCTTTTACAAGGACCGCTTGGGGTTGTACCCCTATTATAAGGAGCACGATGGTGCTGTCATGAACGGTGGGCTCCCGCAGGTTGCCAGTCTCACTCAGCACCTGGAGAAGATGCCGGAGGGTATTCAGTATTACATACGCGAAGCAGGGGCCAAGGGACTGGCAGTTATTGACTGGGAGGAGTGGAGACCACTGTGGATCCGCAACTGGGACGTCAAGAATGTGTACCGCAACCAGTCAAGGCAGCTGGTGGCCCAGAAGAACCCAGCCTGGCCCGCAGAGCGTGTGGCTAAGGTGGCCCAGCAGGAGTTTGAGATGTCAGCCCGGAAGTTCATGCTGGAGACCCTGAGGCTGGCTAAGAGCCTGCGGCCCAACCAGCTGTGGGGGTTCTACTTGTTCCCAGACTGCTACAACCACGACTACAGGAACACTCTGGAGAACTACACGGGCCGCTGCCCTGACGTGGAGGTGGCCCGGAATGAAATGCTCAAATGGCTGTGGATGGAGAGCACAGCCCTCTTCCCCTCGGTCTACATGGGCACGGTGCTGCGCTCTTCGCCCTCGGGGCGGCAGTTTGTCCGGAACCGGGTGAAGGAGGGGATGCGTCTGGCGTCAGGGGGAGACGGGCTGGCACGTCCTGTCTTTGTGTACGCCCGGCCCACCTATTCCAACGTACTGGAGCTGCTCACAGAGACGGACCTGGTCTCCACCATCGGGGAGAGTGTGGCTCTTGGGGCCGCAGGCATCATCCTCTGGGGAGATCACGcttatgccagcagcaagGCCAGTTGCTCTAGTCTGAATGAGTACCTACGGGGTCCGCTGGGCCGGTACCTGCTCAACGTTACCACGGCAGCAGAGCTGTGCAGCCAGACGCTGTGCGATTCCCTTGGACGCTGCCTGCGTAAACACCCTGACACTGATGCCTACCTGCACCTCAGCACCCGCACCCACAGAATAGAGCCCCTAGCAAATGGAAAACTCAAGGTTCAAGGTCAGCTTGGGGAAGACGACATATTGGGCTTTCAGAGGGAGTTTCAGTGCCAGTGCTATAGTGGCTACCAGGGAGAGGGCTGTGGCCAGAGAGACCCCCAACAACAACGAGGCGTCGCAGCTCCAATCATGGCGTCATGGGTGCACTGTTTGCTCCTGCTACTCATCACACTCCTGCTCTGAGTGCAAACAGTACATCCACAGGCATACAGCTACATTCAAATAATTGGACGTGTACTGGTATACACATGACATTATCTACACACATGCGCAAACATTATAGAAATACACTTTGGGGCAAATGTATTCACTGTGGTCCAGATTGCTGTAAGGTTGGTGGGTCTATGTGGAACACTGAGTTATGTGGCTGTTTGTGTGTTGATTTGTTTCCCATACATTGGAGGGCTCGCTGGAAATAACTTTGTTTACATTGATCTCTTTCTCAGTCTCCTTCCCACAATAtatctctctcaacccctcccccctctttcaaGGTGTCATTTTCTCATGATCCCAAAGTTGATGTTTTTGTGTGGAAATGTGTGTTGTTTTCAGATGTGCTTCTGATGTATGTACGGTTTTGTGTTATGTGTGAGCCAAAATGGGGCCGATGCACTTGATTCTTGGAATAGCACAAAATAGTTCTTATCGCCTGACCTCTGACATTTTATCTTTAGGTTTCAATATTTATATTAATGTATTTTCACATTTGTTAAAAAGCTTTTATTTTATGGCAAAAACAAGACTACTATTTTCGCTCTAAAATTGTGCTTCTCCCTTACTGTGTACAATGTTTCAATCACTCAAAATAAATCAAAGCTGTAATTAAGTGATACTGCCAGAGAAGcctgtgtttggaggatatattggcacaggtgtTGTTCCATCAAGGGCctgcaaaccgtgccaatatatcctccaaacaccagcttcgagggcattatcacttttatacaacgggttaccaacatattcaaataatgagtgacatattttaattaaaaatgttattttgatgaa

Function

GO: NA

KEGG:

id description
K01197 hya; hyaluronoglucosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU694967 lncRNA downstream 4397 43423639 ~ 43423982 (-) True G610453
TU694962 lncRNA downstream 6355 43421810 ~ 43422024 (-) True G610448
TU694953 lncRNA downstream 15774 43412365 ~ 43412605 (-) True G610439
TU694942 lncRNA downstream 21481 43405983 ~ 43406898 (-) True G610428
TU694917 lncRNA downstream 41070 43387084 ~ 43387309 (-) True G610403
TU695016 lncRNA upstream 3201 43436883 ~ 43438743 (-) False LOC110527812
TU695033 lncRNA upstream 16519 43450201 ~ 43450487 (-) True G610492
TU695036 lncRNA upstream 19433 43453115 ~ 43453406 (-) True G610495
TU695041 lncRNA upstream 36024 43469706 ~ 43469914 (-) True G610500
TU695043 lncRNA upstream 37280 43470962 ~ 43471240 (-) True G610502
XM_036983280.1 mRNA downstream 98812 43034642 ~ 43329567 (-) False LOC110527806
XM_036983281.1 mRNA downstream 98812 43034642 ~ 43329567 (-) False LOC110527806
XM_036983283.1 mRNA downstream 98812 43034642 ~ 43329567 (-) True LOC110527806
XM_036983282.1 mRNA downstream 98813 43034642 ~ 43329566 (-) False LOC110527806
XM_036983284.1 mRNA downstream 400563 43003314 ~ 43027816 (-) True LOC110527807
XM_021609339.2 mRNA upstream 3198 43436880 ~ 43438762 (-) False LOC110527812
XM_021609338.2 mRNA upstream 3198 43436880 ~ 43438771 (-) False LOC110527812
XM_021609341.2 mRNA upstream 3198 43436880 ~ 43439076 (-) False LOC110527812
XM_021609337.2 mRNA upstream 5532 43439214 ~ 43449075 (-) False LOC110527811
XM_021609336.2 mRNA upstream 5532 43439214 ~ 43458193 (-) True LOC110527811
TU694691 other downstream 261059 43147500 ~ 43167320 (-) True G610183
TU694690 other downstream 265410 43107127 ~ 43162969 (-) False G610182
TU694680 other downstream 265410 43154349 ~ 43162969 (-) False G610182
TU694689 other downstream 265410 43154349 ~ 43162969 (-) True G610182
TU694697 other downstream 271290 43151570 ~ 43157089 (-) True G610185
TU695019 other upstream 1896 43435578 ~ 43438743 (-) False LOC110527812
TU695015 other upstream 2207 43435889 ~ 43438743 (-) False LOC110527812
TU695007 other upstream 3201 43436883 ~ 43438812 (-) False LOC110527812
TU695009 other upstream 3201 43436883 ~ 43438812 (-) False LOC110527812
TU695010 other upstream 3201 43436883 ~ 43438913 (-) False LOC110527812

Expression Profile