RNA id: TU695019


Basic Information

Item Value
RNA id TU695019
length 2285
RNA type TUCP
GC content 0.42
exon number 4
gene id LOC110527812
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43435578 ~ 43439076 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTCACAGTGTGTACTTGTCGTTTGGGAtctgtggctagctagctagacaaatTGGCTATATTTGAGAAAACACTACCGTAACGTTACGCAAAGGAGGGAGGAATCCAAATCCAAACCAATAGAAAACTGACTGGTTGGCCAGCTCATATAATCGTTGCCTAGGAGTTTTCTGTGACAAGGGATAATGTCCCACCACTGAAGATGGGAGGCAGTGGATCCAAGGTGAAAGGTGCTTGGCCATTTGCTGGTTCGGGAGCTGGAGGAGATTCGGGCAGTGAGGGGCAAGAAGATCACTCTGTTGCCCGGCTCAAAGGGACCAGAAAAGCAACCCCATTTATTTTCACAAGGAGGAGCTCTCTCTACTATGATGAGGATGGGGACCTGGCTCATGAGTTCTATGAAGAGACTGTAGTGACAAAAAATGGCCGGAAGAGGTCCAAGCTGAAGAGGATTCAGAAGAACCTCATACCTCAGGGAATTGTGAAGCTAAACCACCCCCGGATCCATGTAGATTTCCCTGTCATCCTCTTTGAGGTGTGAATCCCACTGGGGGGGTGGTCTAACGCAGAAAAGACATCACTACAACCGCTCCATCCTGAACGCTAGTGTTCCTCTGAGAGAATGGGTGGGATGTCTGACTACACTCAGAAGCTGTCGACAGACCACCAGAGTTATGTTGCGGACAAAAAGaaaggggaggaggagtagataGAGTTAAACGTTCTGCCTTCTGTGAtgtagagaagtgtgtgtgtgtgtgtgtgtgtgaaagaaagGTAGCAAGATCAGGGGAAGGTTTAGGAATtcccactgtactgtatatgttgaCCATTTTCATGTTGTAATGTTATCATATCTAAGTCTGCCTCTATGATTGGAGGCCAGACCTGCACTAGTCAACTTTTTTTaatgtaaacaaaaaaaaatacaaaagctGTCTGAGTTGGAAATACTTGAATAAATGGTTTACCAGGCTGAAAGACTGTGTTGAGGCATTCCCCTTCATTATCCAGTCCACATATGTTTCACATTCTGATGAAGAGTGTTGTTCCATAACAATGTGGTCACAGTAATGAGGTTTTCATGACTCAGACTAACATAATTTACTGGTCCATTCAAAAGTATTTTTCCATGTGTAGTTATCACAATCCTGTGAAGCTGTTTTTGGTGAATCTTGTTTTTCTGCTGTACCTCTGTTTTATCACCAGGGTGCAATGCTCTTGTACATGTGGGTCTTAAATGTTTGATTCTCTTAACGTTTTTGGGGCAATCATCAATGTTGCCAATTTGAATCATTATGACACATGACTTATGACATGTCTAGTTTTCTTTATGATCCAGTCATTTATTTATAGACATATTTTGAAGGTCAAGTGACAATGGTAATCCATTTGCACAGTATCTAATGGTCCACGAgcatgattatattatatatatatatatattatcagtTTCAGTGTTGTTTTATTGCTCTCCAATAGCATACGGTAGGCAACAGGCATGTCTGGCCCCTGTAATTGTGTTTCTGGGCTAGAGGTCAGACACTTTTTAGGTATTTCCTCCTTGCTTCCTTTGTTCTGCGGAGTTACTCTAAAATGGGTGAGGCTTGTATATGACCATAAATGCATaaggtgtgtttttgtgtttaagCTTCACTGATGAAGTAAGCGTGCATAACAATATAGGGAAGTGTTAGAGCAGAATAGAGAACGGTAAGTAATGTACAATGTGTGATGGAAAAAGGTGTGTGAGGGTGTATGTATGGGTGTGGATGTAAATATGCACATAAAACATGCGCTGTTACctcatattttatttaaccaggaagtccTATTGAGTTAGGAAGAATGCTTTCCCAAGTGAGACCTTGATCTGGCACACTTTGGACTGCTATAGGCAGTTTGTGTAAAGTATGTGAATGAATGGGTTTGTTTGAGTAAAAATAGATGTTCATACATCTGAGATTAAATATCATTTTATAAAGCAGTTTCTCATGATCTGCAATTCAAATTGTAATCTGTGTGGGTTAGATACAATTATACAGTACAGCCCTATGGTCCCTCTTCTAAAGTGATTGTGGTTGAGGTGATAGTGTGTGTTTCCAGTTCCCCACATTGTTATCATTTCCTAGTCGTGCCTGAAGGTTGATGATGTAATGTCCAAGAGATATGGGTCAAAGGGAAGCACACAAGATGGAGGGAAACCACACATCTCTTCCCTCACTCCAGAAGAATCACCCAATTTAGCTCAGCCCTCGATTTGTACGTGTCTCGAAGCTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU694967 lncRNA downstream 11596 43423639 ~ 43423982 (-) True G610453
TU694962 lncRNA downstream 13554 43421810 ~ 43422024 (-) True G610448
TU694953 lncRNA downstream 22973 43412365 ~ 43412605 (-) True G610439
TU694942 lncRNA downstream 28680 43405983 ~ 43406898 (-) True G610428
TU694917 lncRNA downstream 48269 43387084 ~ 43387309 (-) True G610403
TU695033 lncRNA upstream 11458 43450201 ~ 43450487 (-) True G610492
TU695036 lncRNA upstream 14372 43453115 ~ 43453406 (-) True G610495
TU695041 lncRNA upstream 30963 43469706 ~ 43469914 (-) True G610500
TU695043 lncRNA upstream 32219 43470962 ~ 43471240 (-) True G610502
TU695159 lncRNA upstream 38527 43477270 ~ 43477573 (-) True G610579
XM_021609333.2 mRNA downstream 1896 43428379 ~ 43433682 (-) True LOC110527809
XM_036983280.1 mRNA downstream 106011 43034642 ~ 43329567 (-) False LOC110527806
XM_036983281.1 mRNA downstream 106011 43034642 ~ 43329567 (-) False LOC110527806
XM_036983283.1 mRNA downstream 106011 43034642 ~ 43329567 (-) True LOC110527806
XM_036983282.1 mRNA downstream 106012 43034642 ~ 43329566 (-) False LOC110527806
XM_021609337.2 mRNA upstream 471 43439214 ~ 43449075 (-) False LOC110527811
XM_021609336.2 mRNA upstream 471 43439214 ~ 43458193 (-) True LOC110527811
XM_021609334.2 mRNA upstream 18652 43457395 ~ 43466285 (-) False zmynd10
XM_021609335.2 mRNA upstream 18652 43457395 ~ 43466285 (-) True zmynd10
XM_021608250.2 mRNA upstream 48350 43487093 ~ 43491029 (-) False cish
TU694691 other downstream 268258 43147500 ~ 43167320 (-) True G610183
TU694690 other downstream 272609 43107127 ~ 43162969 (-) False G610182
TU694680 other downstream 272609 43154349 ~ 43162969 (-) False G610182
TU694689 other downstream 272609 43154349 ~ 43162969 (-) True G610182
TU694697 other downstream 278489 43151570 ~ 43157089 (-) True G610185
TU695150 other upstream 87948 43526691 ~ 43536965 (-) False LOC110527816
TU695151 other upstream 87948 43526691 ~ 43536965 (-) False LOC110527816
TU695152 other upstream 87948 43526691 ~ 43536965 (-) False LOC110527816
TU695153 other upstream 87948 43526691 ~ 43536965 (-) False LOC110527816
TU695154 other upstream 87948 43526691 ~ 43536965 (-) True LOC110527816

Expression Profile