RNA id: XM_036983287.1


Basic Information

Item Value
RNA id XM_036983287.1
length 3107
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110527813
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43492886 ~ 43506472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGTGCCAGACTGTGCATGTGTGAAACAGACCATGAGGCAACAGGACATTTCATGATGTACATCTGGGATGTTTACATCTTGTTTGGGACATCTTGTCTGGGCCTACTGACACTCTATCTGGGCCATTTGTCATATTGTAGTAATCTGAGACTTTCTGACTGATATGGATCTGGTGTCTGGCTCTTTTTTGGGTTGTCTCTGGGTAGTTTAAGGGCCGTGTCTAGACTCTGATGTCTGGGCCTGTTTCCAGGAGGCCTATGGGCCAACAGTCAGaacagctggtgcttggGGCATTCAGAGAGCCGACACAGAGCTGGGACCAGGACTATGACCACTTCCTACTTCCTCTGCTGGACGACCAGGAGCCTTGCTACATCCTGTACCGCCTCGACTCCCAGAATGCCCAGGGATACGAGTGGATCTTCATCTCCTGGTCTCCTGACCAATCTCCAGTGAGACAGAAGATGCTGTACGCTGCCACCCGTGCCACAGTGAAGAAAGAGTTTGGTGGTGGTCATGTGAAGGATGAGATGTTTGGAACAGTGGAGGAGGACATCTGTCTCGAGGGCTACCACCGTCACGTGTCCTCCAGCTCCGGCCCTGCCCCACTCACAGCTGCTGAACAGGAGCTGCGGAGAATCAAAATCAACGAGGGAAGGGTTAAGCAGGTGAAAACAGAGACCAGTGTGGAGAGTAAGCACCAAACACTGCAGGGCCTTGCTTTCCCATTGCAGGAGGAAGCCAAACATGCACTACAACAACTTGCACAGAAAGGCATCAACTACATACAGCTGAAGttggacacagagaaagagactatAGAGCTGGTCCATTCCGACCCGACAGAGACCCGTGAGCTGCCTTGCAGGGTTCCCACGGACACGCCCAGATATCACTTCTTCCTCTATAAACACTCTCACGAAGGGGACTACTTGGAATCTGTTGtGTTCATCTACTCCATGCCAGGGTACAGCTGTAGCATTAAGGAGCGGATGCTGTACTCCAGTTGTAAGAGTCGACTGCTGGATGAGGTGGAGAAGGATTACCATCTGGAGGTTGCCAAGAAGATGGAgattgacagtggggatgagtTGACAGAGGAGTTCCTGTATGATGAGGTCCATCCTAAGCAGCAGGCTTTCAAGCAGGCCTTCGCCAAGCCTCGTGGCCCAGCAGGGAAGAGAGGCAACAAGCGTCTCATCAAGGGCCCAGCGACTAGGGAGAGCAGGccggagagctagagagagggacagaggtcGTCTTGGCAGCCCTTCCCTGAATCCTCCTGCTGTTGCCATGTCCTCTGGCAGCTTGTTTGGCCACGAAGAAGGAAAAGGAGAAGAACATGGAGGGATTTCTGTCATTTTTTATTTCCCCCTGCCTTTGCTTGTGTTTTAACAATGTGTCAATAATGTACGTGCTATTCATGAACATCAACTATAGcaatggttcccaaactgtgggggaGCGAAAGGTCAGCATGGGGAAGAAGAGGGAACTCACTCCGGCTTTCAACTTACTCCAAACTTACTCTGCAGTTTCGATattgggtagtgcatcagcagaatgtgtagaattgcaggaaatttgtttTAAAATGGCAACATTTTCTCTGCATCCCAtaacaaaatgtatagaattatgGGAAATAAGCTTTAATCCTACAACATTTCATGAACattgcttgtgcccatagaaatagatgtgGCTTGCTTTTgcgatgaggggggggggggggggggggggggggtgggggatgtTACCCAGTAAAAAAGTTTGGAAAACCCTAAACTATAGGATAAAACTAAGGATTTCACTTGATTTTTCTCAATATCTTTCCGTGTCACTCTTAAACACAACatcctacacatacacacagatggATAGACAGATGGACTGACAGATGGACTGACAGAAATTAAAGACCAGTGGGTGGTCTTACAGATACCTCAGCCGAGTTTCTCTATTGCTAATGTCACATACAGGAGAAGCGTGTCTCTCTAATGTATTGTCCATACCTTGCTTGTTGCCACTAAATGTTTTGTATCAAACACGTTTTTATAAACAGATGATACTAATGAGAGGAATGCCaaataaaatatagtttttttctTCTGTATGTTGTGTCATAAAAAAACACAGCACAAATTGCATGGGCCAGATGATGCATTATAGCCTCTTGTTGCATCTACGGCCAcgcagaggggacagagaggacacgtCTCTAGCAGTGTTCCCGACAAGACTATTGCAGGCCGCAGCACTAGTCCGGCCTGTTGAGGCAGCGAATGGCCGTCCTTTAACATAAGCACAGGCGATCAACATGTGCAGGCAGTCATGTATAGTTACCACAGAGCAGATTCCCTGTCATTATGAGTTCCTTCATAATTGAATTCGCAAGTAGCCTATTAGTAATCTACACATGCCTTTGAGAGCACGCAAATTAAAAGACCTGCTGATAGCCGCTGTTTATACATTTACACTAGGTCAAGTTTCGTAAAGGCAACTCAAACATCTATATATCACATGATGACATATTGACCGATTACACATGACACGTGTTGGTTGTTAACATTACATCCTTGTTCTTCACTGGTCCTGGGGACACGCATTTCCAGTTcagtactaacacacctgattcaattagtAAGCCTTAGGTAAGACCAGGCAGGAAGAAGAACTCAATGACTGTTTACAACAGTTTGTTTCAAAGCTTACTCTACCGAACAAATAACCAACCAAATCACTGTGGTAAATTAATGTCAGGGCAAACCTAAAATcacatttgttttttttgttcttgTATTTCCAGCAGACGATGGGCAACTTTTTGGAACTCAGTTGAGGTCTCAACTTGCTGTTGAGAGTtaaaatagtagaatacacaaggtgcaatttcgaaatctGGTTGTGCATCAGGTCTGGCTGTGGGTATGCAGACCCACGAGCCACTGTGGCCCTTCATGATAAGCTCATATTTCTTGTGGCCCCCACCTCCATCaatgttgcccatccctgatctacaCTGAACATAAATAGAAACATATGTtaagtgttagtcccatgtttcatgaactgaaataaaagatcccagaaatgtgttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695159 lncRNA downstream 15313 43477270 ~ 43477573 (-) True G610579
TU695043 lncRNA downstream 21646 43470962 ~ 43471240 (-) True G610502
TU695041 lncRNA downstream 22972 43469706 ~ 43469914 (-) True G610500
TU695036 lncRNA downstream 39480 43453115 ~ 43453406 (-) True G610495
TU695033 lncRNA downstream 42399 43450201 ~ 43450487 (-) True G610492
TU695818 lncRNA upstream 95021 43599887 ~ 43600118 (-) True G611167
TU695896 lncRNA upstream 161841 43666707 ~ 43667658 (-) True G611214
TU695898 lncRNA upstream 163547 43668413 ~ 43668921 (-) True G611215
TU695960 lncRNA upstream 263492 43768358 ~ 43768591 (-) True G611275
TU696122 lncRNA upstream 529630 44034496 ~ 44034844 (-) True G611423
XM_021608249.2 mRNA downstream 1587 43487093 ~ 43491299 (-) False cish
XM_021608250.2 mRNA downstream 1857 43487093 ~ 43491029 (-) False cish
NM_001171853.1 mRNA downstream 2010 43487094 ~ 43490876 (-) True cish
XM_021609334.2 mRNA downstream 26601 43457395 ~ 43466285 (-) False zmynd10
XM_021609335.2 mRNA downstream 26601 43457395 ~ 43466285 (-) True zmynd10
NM_001165230.2 mRNA upstream 6675 43511541 ~ 43514743 (-) True wdr82
XM_021609348.2 mRNA upstream 21836 43526702 ~ 43537037 (-) False LOC110527816
XM_021609344.2 mRNA upstream 41010 43545876 ~ 43572323 (-) True brpf3a
XM_036984431.1 mRNA upstream 77448 43582314 ~ 43596447 (-) True plch2b
XM_021609350.2 mRNA upstream 95683 43600549 ~ 43639637 (-) True skib
TU695010 other downstream 53973 43436883 ~ 43438913 (-) False LOC110527812
TU695007 other downstream 54074 43436883 ~ 43438812 (-) False LOC110527812
TU695009 other downstream 54074 43436883 ~ 43438812 (-) False LOC110527812
TU695019 other downstream 54143 43435578 ~ 43438743 (-) False LOC110527812
TU695150 other upstream 21825 43526691 ~ 43536965 (-) False LOC110527816
TU695151 other upstream 21825 43526691 ~ 43536965 (-) False LOC110527816
TU695152 other upstream 21825 43526691 ~ 43536965 (-) False LOC110527816
TU695153 other upstream 21825 43526691 ~ 43536965 (-) False LOC110527816
TU695154 other upstream 21825 43526691 ~ 43536965 (-) True LOC110527816

Expression Profile