RNA id: LOC110527818


Basic Information

Item Value
RNA id LOC110527818
length 1907
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110527818
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43524687 ~ 43526668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actagctagttagcgatACCGTCTTCTAGCTAGCATGCAAGTTAGCTAGCACACGGGTGTCACCACAGATTTGGTGTCGCTTCCCACCTGCTGTGTACAGGACTAGCTGGCTAAGCTAGCACAGTGTCCTTCGGTCCACCTGCCTTTGCCGTCGTTAACAGATCTGTAGGAAAACAGTGCCCGACATGCGGGGACGAAGGACACTGTCCACCAGCGtacggctagctagctaccattgtCACCTCGCCCCTTCTTCAGTGGGGTTTATTGGTGGCTGGCATCCAACGTTATTGTGCAACGTtaacgccacctactgtactggagcacCCCCGCCTCCCACAGCTTAAATAAATGACCAATAGATGTATAAAGAGGGGTTCCTGCAGATGCAGGAATGCCCCAAATTGCAGGCCGCAATTGCACCATTCTCGCCCCTCTTGATGTTAGAGTTATAAGTGAAAGAGGTTTGAACATTAACCACTCATTCACACCACAAGGTGGCACAGGTGGCCCTGTCCTCATTACAAAGCCAATATTTTATACCAATTAGCTCAAACTGAGCAGCACTGCTGTTGGGTTGACCCTGTATAGTCCCTGATTGTACAAAATCATCTGAAGACAAACACAGCCTGCTCACTTTTTTCTGCCTTATGGTCAAGCTTGAGTCAATCATTACACGGAGGGTACACATTCAACTTGAGTTGAGCTCTTTACAGATTTTGCGACACTGCCTTAGTGCTGATCCTGACTCTGCAAGTACACAGCTCTCACACAGAGGAAATCCAGAGGTTCCCCATACCCTGTGTAGGCAACCTCACTAGGATTCTCTCATAATGACTTGAGTCTTGTCAACTAAATGCTGAGTGAATATGTGGTTATCTGATGTGGTGTGTGGGCATCTCAAGGTAAGGGACAGAAGGTCAACTAGTAGGCCCCTTTGTCTCTATCTGGAATCTCTTGGGTGTGTCTTTTGGTGTGCACATACAAAAAATGACCAGTAAAATCACAACAGCAGAAACATCAAAGGGGGCCCTGTGATCCATAAACTTAGTTTTGGCTTTGTTCTCCCTGATAGGACAGCCTGATGGCTCGTGTTCTGTCCCTGCATCGGCCTTTGTCTTTACTGGCCCTTGTGGGGGTAAGGGGATCCACGGTTTTCAGACATGCGGGCACGGGAGATGTTTGCTACAGGTGTGCAACCAGACATTGTGGTGCGGCGGAGTCTGGAGCGTACAGGGGACACCTTCCTAGTGAATGGCCACAGCTTCACGCTCAGAAACAACCTTCACCTTGTGGGCTTTGGCAAAAAATGTTTTAGGTATGGCTGCAGAGGCAGAGAGGATTGTGGGAAACCACTTGGTGATAGTGAGTGCCACACGGGATAAAGGAGACATTACAGCAGCATGGGAAAGAGTAAGCAACTCAAACAAGTGTTTGTGGGATGGAAGTCGGATCACAGTGATGGAGGGAGCTAAACACAACCTGCCAGATGCTGATACTGATGCCCAGGGAGCAGCCAAATGTATCAAGAGGCTGGCCAGCACACTGACAGAATGAGCTGTTGCTTGTACTAATTTCAGGTAAATTGATACCTAACTCCTACCACAATTTAATTGTTGAACAAACTATATAATTATTACTTAATTTGAATCACTGAAGCTACAGGGTGTCCATAAATATCTTTgaagcccagtgcagtcaaacacttgattttactgtattttatacaTATTTCACACTATGAACTTGGAGTAATACTGTTAAATTGTGAAAATAGCATAATGCccatttagtgtaagagctgtttgaaaagactgccttaAATGTCCACCTGTTTTGACCGATGGTGACATCACTGTGCAATAAATTAGCTAGACCAATGAGAAATAGTTCAAAACTATGCCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695074 lncRNA upstream 9944 43513765 ~ 43514743 (+) True G610528
TU695062 lncRNA upstream 26962 43495012 ~ 43497725 (+) True G610517
TU695056 lncRNA upstream 35703 43486861 ~ 43488984 (+) True G610512
TU694993 lncRNA upstream 69084 43455337 ~ 43455603 (+) True G610477
TU694992 lncRNA upstream 69696 43454628 ~ 43454991 (+) True G610476
TU695106 lncRNA downstream 25662 43552330 ~ 43560669 (+) True G610545
TU695132 lncRNA downstream 58580 43585248 ~ 43586231 (+) True G610564
TU695217 lncRNA downstream 96928 43623596 ~ 43673775 (+) False G610627
TU695216 lncRNA downstream 145063 43671731 ~ 43673775 (+) True G610627
TU695209 lncRNA downstream 303170 43829838 ~ 43831880 (+) False G610622
XM_021609332.2 mRNA upstream 489476 43027924 ~ 43035211 (+) True LOC110527808
XM_036983275.1 mRNA upstream 533323 42985660 ~ 42991364 (+) False LOC110527804
XM_036983276.1 mRNA upstream 533323 42985660 ~ 42991364 (+) False LOC110527804
XM_036983277.1 mRNA upstream 533323 42985660 ~ 42991364 (+) True LOC110527804
XM_021609317.2 mRNA upstream 589439 42932983 ~ 42935248 (+) True rbp7b
LOC110528952 mRNA downstream 263 43526931 ~ 43529047 (+) True LOC110528952
XM_036983289.1 mRNA downstream 10329 43536997 ~ 43545817 (+) False mon1bb
XM_036983288.1 mRNA downstream 11915 43538583 ~ 43545817 (+) False mon1bb
XM_036983290.1 mRNA downstream 11986 43538654 ~ 43545817 (+) False mon1bb
XM_036983291.1 mRNA downstream 12007 43538675 ~ 43545817 (+) True mon1bb
TU694950 other upstream 113881 43410391 ~ 43410806 (+) True G610436
TU693833 other upstream 703442 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 1693879 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 2061518 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 2890248 40634181 ~ 40634439 (+) True G606977
TU695128 other downstream 57352 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 302336 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 475956 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695458 other downstream 495181 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU698525 other downstream 2752066 46278734 ~ 46279333 (+) True G613664

Expression Profile