RNA id: TU695154


Basic Information

Item Value
RNA id TU695154
length 2741
RNA type TUCP
GC content 0.46
exon number 2
gene id LOC110527816
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43526691 ~ 43537037 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTGATATAAGTAGCTAACACTAAAAGCAAATATTTACATCTGTGAGTTCACTCAAATATTTTTGACGAATTGTAACAGTCAGCCATAACGTTAGCTGGTTTaggtaaggcatgtttttttGACAAAATCATACACGTTGGGTGGCGTTTTATAAAATGGAAGAGCCGTGGGATTTCGAGTTTTTATCCCGTATTGTGGACGGGTTTGTGTCGTTTCTTTCCGAGTTTGTGGATGACTGGTTGGCTAATGATATGAGAGTGTCAATATTCAAGATCCTGTTTAGCTGGCTTGTTGTCAGTCTCATTGCCATCCACTTCGCTTGGAGAGTTTACGGAAACACTGTGAACGATATGTATTAccgacaagGGAGCGTGCTGCAGGGGACACCATCAAGACACACCGTGAGTGACAGACGGGACATAACAAGTTGGACTACATTCTACTTGTTCTCGGTCGAATCAGACAGTGCTGCTGAGTGGACACAGACTTGATATGTTGTGCCTTTTCAAATGGGCTGGAGTTCATCGATGAGGTGGGCCTGCAGACGCTTCCTTACTCTACGCTGAAAAATTACTTTTTCCCGGACGGTTGTCATGAAGGGGTAACTAATCAGGCTCAGTTTACATCCAGACAGCCACACCATGCGATAAGCGAAGATATTCTCTCATATGTCATATCTTTTTAAATCTCATATTTTAAAATGAAGCTTATGTACATTTTTTACCGCCTTTGATTGGTGAGCCATTAAAATATCTATCCAAGTCTATGTCCTCTGATTGGTTGTAGATTGAACTGAAATGTTATTCTAATCTACCGGTAGACAGAATCTGAAAAGACTTGACAACTGCTGTGAGTTGTGACTGCTGTTATGTCCATAACATATTATTGTATGAATAAGGAGCGGTTTTTATTTCCACTGGAGCAAGGCTACATAGTAATCCACGAAGAGTGCGCTGGAGCAAGACTACTGTGGAGAAAGTGGTCAGAGATAGAAGCCTTACATCAAATGGCAGCTCCCCTCGAACTCTTGATTTCTTTTTCTAGACAGACTCACCTTATTATAGTCGTTGTACACCCCTCTATGGCTGGAACCTCCATACTGAGAAGGAGCAAATGCATGAGGCCTCTGGCTGTCTTCTGATTAAAGTCacatttagtttaaaaaaaaaaaaatcattctcTAATACGATGTCCAGCACACAACCCACGATTGCTCTGTACAAGAACACTCTCCACAAATAACCAAAAAGTAAGCAATTTACGCTATTCATTAGACATAGCTGACTGCGACTTTTTTAAATTAAACGTGGACTTCCAGAAGGGCTTGCTGGAAAGGGGTATAATTGGCAAGGTCAACTTTGAAAAGCTGAGCTCTGAATATATTTAAGTCTACTCAGTATGGATTCATACTGAAATGTGTGCTTAGCTGCTTTCAGGCCCTCGTCTTCACCAGACACGACTATGGGGATTGGTGGGATGAGCAGGATGTACACATCCCTCACATTGGTACCCATTAACCCTGGTAGGAGCAGTCACTGCCCACCAGACAGGTGTGAAAAGGTGAAGAAATCATTGTTAATGAGGATGCCTCAGTGTCCAGCCCCTGTGCTCGTGCTTCTTCTCCAAGCCCTGCGTCTATGACCGCCCCTGCTGCCTCAGTTGGTCGTCTTGACCATCTGTCCCACCACGCAGGAACAGGGGACCCTTCGGAGGGAGTGCCAAGcctcccagctccagccccacTCGCAGGGCTAGCTCTTGGTTCTGCCCACCACGCCCCTTGCCTGTCAACTGCGCAGTGGGCTCTCCCCCAGCCAGCATACGGTGgctccccatccctccccacGCCAAGCACCTGCATAGCACGGCACAAATCCCAACTCACCACGCCCATCTCGGGCCCCAGCTTCAGAATCTCAACAGGCAACTCAGGAGGGGGCTCGTCACGGGAGCAGGCAAAGTGAGCCAGTAGACCATAAAGGCGAGACAGACTGTACGTCCCCACAACAGCACAACTGGACGGAATCCAAGCTCCCCTGCACGTCGCCCTGCGCATTCCAGAGCAATACTGTTGGAGCCAATCACAGCATTGAGAACATATGCCACCCTGTCTGACTGCTCTCCAGCCTCCTCCCACCGGGGAGCTGAGTGTCCAGGGACCTGCTTGActgaggtggggagagaggctgCGATTAGCCCATAGCGGTCCAGCACCGACCAAATCTCCTGAGGCCACGCCTCAGTCTACAATATGGGGCCGCTGGGCTTTTAAGTCCAGGGGATCTCAGATTACATCAGACAGAACCAGGGCCACCACCTGTTTTGAAAATGTTAACAGGGATATTGTATTTGACCAAATATGGCCACAATATAAAAGTTAATGTGCAAGAAGTAAAAATGTTGGGGTGAAAGCTCTATAATGAGCTAGTAGAGTTGGAGACTTATTTGAGCAGGGTGAGCGCAGTGTGCAAGTCCTCCTCCCTTCAATAACGAGGGCATGGCGTACAGAGTTAAGCTCCTGAATGGTAGCCCCAACTACAAGACAGTCAGTCTGAGTGTAACATTCTGTTTTTCTTGAAGAGAGATGAGTGTGACTGGGGCAGGCAAGAGTGCAGACCCTCCTACATGTGTGTTAAATGTCCAATGCAGCAGAATGTATCTATCAAATCAtttttgggtaacaattaagtcttactgtgattgtttaaTTAAACTgatgtaataaaataaaaaatgtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695159 lncRNA downstream 49118 43477270 ~ 43477573 (-) True G610579
TU695043 lncRNA downstream 55451 43470962 ~ 43471240 (-) True G610502
TU695041 lncRNA downstream 56777 43469706 ~ 43469914 (-) True G610500
TU695036 lncRNA downstream 73285 43453115 ~ 43453406 (-) True G610495
TU695033 lncRNA downstream 76204 43450201 ~ 43450487 (-) True G610492
TU695818 lncRNA upstream 62922 43599887 ~ 43600118 (-) True G611167
TU695896 lncRNA upstream 129742 43666707 ~ 43667658 (-) True G611214
TU695898 lncRNA upstream 131448 43668413 ~ 43668921 (-) True G611215
TU695960 lncRNA upstream 231393 43768358 ~ 43768591 (-) True G611275
TU696122 lncRNA upstream 497531 44034496 ~ 44034844 (-) True G611423
NM_001165230.2 mRNA downstream 11948 43511541 ~ 43514743 (-) True wdr82
XM_036983285.1 mRNA downstream 20219 43492886 ~ 43506472 (-) False LOC110527813
XM_036983286.1 mRNA downstream 20219 43492886 ~ 43506472 (-) True LOC110527813
XM_036983287.1 mRNA downstream 21825 43492886 ~ 43504866 (-) False LOC110527813
NM_001171853.1 mRNA downstream 35815 43487094 ~ 43490876 (-) True cish
XM_021609344.2 mRNA upstream 8911 43545876 ~ 43572323 (-) True brpf3a
XM_036984431.1 mRNA upstream 45349 43582314 ~ 43596447 (-) True plch2b
XM_021609350.2 mRNA upstream 63584 43600549 ~ 43639637 (-) True skib
XM_021609352.2 mRNA upstream 108405 43645370 ~ 43663650 (-) True LOC110527821
XM_036983296.1 mRNA upstream 126844 43663809 ~ 43697252 (-) False kaznb
TU695010 other downstream 87778 43436883 ~ 43438913 (-) False LOC110527812
TU695007 other downstream 87879 43436883 ~ 43438812 (-) False LOC110527812
TU695009 other downstream 87879 43436883 ~ 43438812 (-) False LOC110527812
TU695019 other downstream 87948 43435578 ~ 43438743 (-) False LOC110527812
TU695139 other upstream 42128 43579093 ~ 43579964 (-) True G610570
TU696390 other upstream 947890 44484855 ~ 44485405 (-) False G611674
TU696391 other upstream 947890 44484855 ~ 44485752 (-) False G611674
TU698246 other upstream 2338000 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 3731358 47268323 ~ 47270071 (-) True LOC110527888

Expression Profile