RNA id: XM_021609349.2


Basic Information

Item Value
RNA id XM_021609349.2
length 2321
RNA type mRNA
GC content 0.47
exon number 10
gene id si:dkey-183j2.10
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43567660 ~ 43582311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCACCCACAAAAAAGTCCATTGGCTGTTTTAGCAGCTCTGTTGTGCTGGGATGAATTTTTCTCATCATCATTTGCCCTCGTTCATCAGGATCAGTCTATAGCTGGAAGCCTCAACACAGCCGACTCACTTTACAGCTAACAATCTTATCAGTTTGTGAAATCACGTTGATACCACGACATCATTAGGATCAGAGGTGAAACCATGAGGGTGCTGTTGGGTGTCATCCTGTGCACCATGGTGCTTCTACTGCCCCTAAGGAGCTGTGCTGCGGCAATGCGACCAGACTTGACAATCACTACAATAAAGCAAGATCCATACACCATGTCCAAAGGCTCTCAGATGGAAGGTTACTGCATGGACCTGCTGTCTGAACTGGCCAAGAAACTGGACTTCAAGTACAACGTGCACCTGGTGAAAGATGGGTCCTATGGCAGGCAGGATGAGACTGGGGCCTGGAACGGGATGATCGGAGAGGTGGTGAGAAAGGAGGCAGACCTGGCGATTGCTCCTCTGACCCTCACTGCTGCCCGGGAGAAGGTTGTGGGGATGACCAAACCCTTCATGCAGACAGGAATCAGCATTCTCCTGAGGAAAGACATCTCAGAAGAGGCTGGCATCTTTGACTTCCTGACCCCCTTCTCAGTAGAGACCTGGGTGGGGATCCTCGCTGCGTACCTGGGGACTGCTGTCTCCATCTGTGTAGTAGCCAGACTCAGCCCATGTGAGTGGAGTCAACCCCAGACTGAGGAAAACAGCTTTACTTTCAGCCACAGTTTGTGGTACACTGCTGGAGCCCTCACTCTACAGGGTGCCGGTCCACACCCCAAAGCTTTATCAGGACGCATAATATGCTGCACCTGGTGGTTGTTTGGTCTGGTCCTCTTGGCTTGCTATTTCTCCAACCTCAGCACATCTCAGGGCTCAGACTCCAATCAGCTGATGGTGAAAGGGTTTGAGGACTTGGCCAACCAGCAAGGGATTGAGTATGGGACCCTGTCTGGCTCCTCCACACTTGCCTTCTTCAAGAACTCTAATAACCCAACCTACCGCAGGATCTACGAGCACATGGAGAGAGCCAAGAGTTTTGTGTCATCAATGGATGAGGGTGTTCGCCGGGCAAAGGAGGGCAACTTTGCCTTCATTGGAGAGTCTGTGTCACTGGACTTGGTGGCGGCTCGTCACTGTGAGCTGGTCCGTGTCCATGAGGTCATCGGCATGAGAGGGTACAGCATCGCAGGCACCCTGGGCTCTCCCATGCTGAAGAACCTCAGTGTGGCCATCCTGGAGCTGAGTGAGGCAGGAGAGCTGGCTTACCTGCGCAGTAAGTGGTGGGCCAGCAGCTGCATGGCAGACGCAGCCAAGGCCTCCCCCTTCCAGCCCCACAGCCTGAAGGGCATGTTCCTGGTGCTTGCTCTGGGCCTGGGGCTAGGGGTGCTGCTGGCTGTCCTGGAGCTCACCACCAAGTCCCGGAGCAATGCCAGGGAGCAGAGGAAATCCTATTGCACAGTGTTGTCTGATGAACTGAGTCAGCGCTTGAGGACCACCGCCACCAACCAGAAGAGGAGCCAGGAAACCACAGACAAAGACAAAGCATGAGTAGAAATGATAGTAGATACTCCATTATATATGGCCTAACAAAGCATTTGTCACTATGCAGGTCTTGACATGAGTTTTGTTCtagatactttttttttttaaccacaaAGAAACACTGTGTATCAGATATGCTTGCAGACTATTTCCAGGCTGTTATATGACATGTGTTAGTTAACAGAGTAATAAATAGCGTACTGGAGAGGTGGAGTAAATTAACAATTCTACAGTATTATTATGTTGAAGATATtttattgagaaaaaaaacatgtatatCTACTGTTACAAATAatttcatgtgtagtgatttagaAAGATTTAAGAGCGGTGCAAAAATAGAAATGAAACCTGAAGGTCCAAGTCAAGTCATCTTGTAAATTAGGAAAAATCATCACTTTCAAAGAGTTTACATTTCAGTACTTTTGGTCAGCACAAATACTGAGAGCAATATATTACTGTTATTAATGAAATTATGCAGTACATTCGTTTTAAAGTAGatcatacatatacatattataGATACCAAGTATACTGAACTGTTTTTGTACAATTGGCAGCACACATTTCGCACATTCGTTTCAAACCTATAAAACCGTCTGTTCACTTACATAACATGTTTTGTCATTATAGAActcaacacatttttttaaaaagcatTATGTCATAGAACGATGTTGATGTAAAAGTTACGGCATATCTTTCAATAAAACCAGTCTAGTAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695106 lncRNA upstream 16165 43552330 ~ 43560669 (+) True G610545
TU695074 lncRNA upstream 62091 43513765 ~ 43514743 (+) True G610528
TU695062 lncRNA upstream 79109 43495012 ~ 43497725 (+) True G610517
TU695056 lncRNA upstream 87850 43486861 ~ 43488984 (+) True G610512
TU694993 lncRNA upstream 121231 43455337 ~ 43455603 (+) True G610477
TU695132 lncRNA downstream 2937 43585248 ~ 43586231 (+) True G610564
TU695217 lncRNA downstream 41285 43623596 ~ 43673775 (+) False G610627
TU695216 lncRNA downstream 89420 43671731 ~ 43673775 (+) True G610627
TU695209 lncRNA downstream 247527 43829838 ~ 43831880 (+) False G610622
TU695210 lncRNA downstream 248549 43830860 ~ 43831880 (+) True G610622
XM_036983289.1 mRNA upstream 31017 43536997 ~ 43545817 (+) False mon1bb
XM_036983288.1 mRNA upstream 31017 43538583 ~ 43545817 (+) False mon1bb
XM_036983290.1 mRNA upstream 31017 43538654 ~ 43545817 (+) False mon1bb
XM_036983291.1 mRNA upstream 31017 43538675 ~ 43545817 (+) True mon1bb
LOC110528952 mRNA upstream 47787 43526931 ~ 43529047 (+) True LOC110528952
XM_021609357.2 mRNA downstream 382166 43964477 ~ 43966869 (+) False ppcs
XM_021609356.2 mRNA downstream 382199 43964510 ~ 43966869 (+) False ppcs
XM_036983299.1 mRNA downstream 382333 43964644 ~ 43966869 (+) True ppcs
XR_002474165.2 mRNA downstream 420245 44002556 ~ 44028120 (+) False si:dkey-264d12.5
XM_021609372.2 mRNA downstream 420245 44002556 ~ 44035143 (+) False si:dkey-264d12.5
TU694950 other upstream 166028 43410391 ~ 43410806 (+) True G610436
TU693833 other upstream 755589 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 1746026 41827211 ~ 41830808 (+) True G608390
TU692153 other upstream 2113665 41462824 ~ 41463169 (+) True G607904
TU691186 other upstream 2942395 40634181 ~ 40634439 (+) True G606977
TU695128 other downstream 1709 43584020 ~ 43584896 (+) True G610563
TU695211 other downstream 246693 43829004 ~ 43831880 (+) False G610622
TU695454 other downstream 420313 44002624 ~ 44006907 (+) False si:dkey-264d12.5
TU695458 other downstream 439538 44021849 ~ 44028228 (+) True si:dkey-264d12.5
TU698525 other downstream 2696423 46278734 ~ 46279333 (+) True G613664

Expression Profile