RNA id: XM_036984431.1


Basic Information

Item Value
RNA id XM_036984431.1
length 4383
RNA type mRNA
GC content 0.51
exon number 20
gene id plch2b
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43582314 ~ 43596447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCTGGATTATGGTAGGGAGTTTGAGTTGTCTTCAGGATATTACGTTTTGGTTTGAACCACAGTCCAACTGGAGAGACCAAGGCTGTGTGAGGGGCACATACACTGGGTAGAGGACATGAGCGGGAGGCAGGTGTGTAGCTAAATCAGCGGTACAGGAATGAACGTCAACTCAGCCATGGCACCGCTATCTCCAGGACTAAACCCCATCAACACCCCACCGATGACAGCTCCATCTCCAAGATCTTCAAGGCTGAGTCTCACCACCACCCCACCGATGGCAGCGATATTTCCAAGACTGAGCCTCACCTCTACCCCAGTGATGGCTACCTCGTCTACAGTGAAGAGTGGCTCTCCATCCTTTGCTTCATTGTCTCCTGGACTGttctccccctgtctgtcctctctgagCGCAGAGAGAAGGACCTCCTCCCCTTTCAGCAGGTCCTCTAGCAGGTCTCCCACCCCGTCCATCATGACGTCCCCAAAGCTGTGGCAGAAAACCTCCATCTCCAGACTGGCAGAGGAGTTCTTCTGGATTGGTGGAAGCGTCGTAGCACAGCCCAAATGGAGACTGGGTCAATATGTGGAGAGGTGTATGTGCACCATGCAGACTGGCACCCAGATGACCAAACTGAAAGGGAAGAAGAAGGGCCTGGTCAGGTTCTTCTACCTGGATGAACACAAGTCCTGCATCCGCTGGAGGCCCTCCAGGAAGCACGATAAAGCTAAAATAACCATCGACTCCATCCACGAGGTGTGTGAGGGCAAGAAGTCTGAGATCTTCCAGCGCTACGCAGACAGTTGCTTCGACCCCAACTGCTGCTTCAGTATTTACCATGGCGACCACGTGGAGTCTCTTGACCTGGTCTCCACTAACGGAGACGAGGCCCGTACCTGGATTACTGGCCTGAAATACCTCATGGCTGGCATCAGTGACGAGGACAGTCTGGCAAAGAGACAACGCAAAAGGGACCAATGGTTACAGCAGACCTTCTCAGAGGCAGACAAAAACGGGGATGGCAATTTGAGCCTGGGCGAGGTTCTTCAGTTACTCCACAAACTCAACGTGAACCTGCCCAGGCAGAAAGTCAGGGAGATGTTTAAGAAAGCAGACACAGATGACAACCAGGGTTCGTTAGCTTTTGAAGAATTCTGTACCTTCTATAAGATGATGTCTACACGCAGAGGCCTCTATCTCATCATGCTCTCCTACAGTAATAACAAAGAGTTCATGGACCTAAATGACCTGGTCCGTTTCATGGAAAATGAACAGAAGATGGCGGGTGTAACCAGAGAATATTGTCTGGAGATAGTGAGCCAGTTTGAGCCATGTTCTCAAAACCTACAGAATATGGTTCTGGGTATCGATGGTTTCACCAATTACATGCGAAGTCCAGCAGGAGACATCTTTAAACCAGACCACCATCGTGTGCACCAGGACATGACTCAGCCCCTGTGTAACTACTTCATAGCCTCGTCCCACAACACCTACCTGACAGGGGACCAGCTTCTGTCTGAGTCCAGGGTAGACATGTACGCCTATGTGCTCCAGGCTGGCTGTCGCTGTGTGGAAGtgGACTGCTGGGATGGACCAGACGGGGAGCCTATCGTCCATCATGGCTACACCCTGACATCCAAGATCCTCTTCAAAGACGTCATTGAAACCGTTAACAAATATGCCTTCACAAAGAATCAGTACCCGGTGATCCTATCCATAGAGAACCATTGCACAGTGCCCCAGCAGAAGAAGATGGCTGAGTATCTGTTGGAGGTGCTCCAGGATAAGGTGGACCTGTCCACGGTCAACATGAATGAATTCAGAAAGTTGCCCTCCCCAGAGCTCCTGAAAGGGAAAGTTCTAGTCAAGGGAAAGAAGCTTCCAGCGAACATTGATGGTGATGCAGAGGAGGGGGATGTGTCGGATGaagacagtgaggaagaggaggatgaagatgacACCCAGATAAACACAGATGTAAGGACATTACTACAGTTTAGCaggaaaaagaagaagaaaaagaagctaATGCTCAATTTAGACCATGCAGACCAAGAGAACCCCATCATGAGAGACAAAACACAAATTGTGTACCACAACAActctggccctcccCCATTCACCCTCAGGAAAGGGAAGACGATGAGGTTATCCCGAGCCCTGTCTGACCTCGTCAAGTACACCAAGTCTGTCCGGGTCCATGACATTGAAACACAAGGTGGGGATTGGCAAGTGTCTTCCCTCAATGAAAGCATTGTGAACCAGATCATGGCTCTGAAGCCAGCTCAGTTGGTGCGATTAAACCAGAGACAGCTACTGCGTGTTTACCCCTCCAACTACCGTGTGGACTCTAGCAACTTCAACCCACAGCCCTTTTGGAACGCAGGATGCCATATGGTTGCACTGAATTACCAGACAGAGGGCCGCATGCTTGAACTGAACAGAGCCAAGTTCTCAACCAATGGCAACTGTGGATACTTACTGAAGCCCAGGTGCATGAACAAAGGTTTCTTTAACCCTACGCTGGAGGACCCTCTGCCAGGACAGAGTAAGACTCAATTGGTGCTGAAGATTATCAGTGGGCAGCAGCTTCCAAAACCCAAAGACTCAATGCTGGGGGATAGAGGGGAGattATTGATCCTTTTGTAGAGGTGGAGATCATCGGTCTGCCTATTGATTGCTGTAAGCAGCAGACAAGGGTGGTGGATGACAATGGCTTCAATCCCATGTGGGAGGAGAGCTTGGTCTTCACCCTCCACATGACCCAGATTGCACTGGTGCGTTTCCAGGTGTGGGACCATGATCCGATAGGACAAAACTTCATTGGACAGAGGACCATAGCATTCGTCAGCATGATGCCAGGTTATCGCCATGTCTATCTTGAGGGCATGGAGGAGGCCTCCATCTTTGTTCATGTTGCTGTAAATGACATCACAGGAAAGGTTAAGCCAAGTAATGCTGTGAAGGGTTTTTTGAAAAAAGCCACGAAGAAAGGGTCGGCCAAGGAGCCAAAGGCGGTCTCCATGCACCTCTCCACTTACTCATCAGAGGACGTCCGTCAGCGGTACCGCAAGGACCTGGACTCCTACTCCCAGGAGAGCAGCGGGAACGGCAGCATGTTACTGACGCCTGCGGTCATAGACTACCTCCATAGAGGGACTCAGAGTGAACCACTGAAGCGAGCTCACACGGTGCAAATTCTGGAGGAGGAAATCCAGGGTGCTTCTCCGAAGGAGGAGAAAAAGAAGGAGGGGAAAAGGAAGGGCATCCTTGTCCGCATGTCCTCCACCTTCTCCAACTCTGGGGCGTCCATCCCGTGCATCACAGCAACAAGCCCAGATCTGGAGGACGTGTTTCAGTCGTCTCAGCCACAGAGTCCAGAACCAGAGAGCCAAACGCAGTCGTTTCAGGCAGCCTGGCCAGATCTGGAAGACCAGGTTCAGTCTTTCCATGCACACTGGCCGGGCCAGGACAACTCGGGTCGGTCATTTGAGCCAGACCCACCTGAGATTGAGGACATAGCAGGAGAACCACTGACAAAGCTTAACAGTAAGCCTGCACTCCAAACTGTATCAGAACATCTGaatcagccccaaccccagctcCATCCGCAGCCCCAGTCCCTACCCCAGGCCCAGCCCCAGTCTCATCCTGAGGTCATTCTCCGGAACCGACACCCACCATCCTCCCCTGTCAGAGTTAGACGGACCCTGGAGACCCCAGCCAGCCAACGCCCCTCCGATACATCACGAACAAAGGCCCGCTCTCGCAGTGTTCCACGAAAGCAGCATACCTCCCCCATCACCCCGGTAGTTAACCGCAGGGCTGCTGTGCACTGGCAGCCtcagactccttcccctccccccCAGAACCATTGCCGCTATGGCCACCAGCCTATACCCAACGGCCTCTACCTGTCTGACAGTGACTCCAGCAGTGGTGGCAGTATAGACAGTCTACGTCTGGAGCTCATGCCCTCGCGCGTGCCAGTCAGTGGGCAGAGGGAAGTGGGCACCCTGCAGAGAGAGATGAATGCCCTCTTTGACCAAAAGATGAAGGAGATTCGCTGTAAATCGCCACTCTTTTTTTACGATTACTCTACGCTATAGTAACCAGACGCTTACAAGGACCACAGCAGTGAGCAGCCAATTGGAATAAGCACGGGAGTAGGAAATACACTTGTAAACATATAGCGTTACCTTGTATGTATCTAGATGTATGTACAAATGTCATCACATTTTGAGACCGAACAAGTTTTATGTGTATAAGGTAATCACTTACTTTTTATGTGGATAGTGTAATTTTTGCATCACGATGCATCTTTTGTTAATACAACTGAATACCAAAGTGAATCGTTCTGAACGGAACAGAATGGAACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695159 lncRNA downstream 104741 43477270 ~ 43477573 (-) True G610579
TU695043 lncRNA downstream 111074 43470962 ~ 43471240 (-) True G610502
TU695041 lncRNA downstream 112400 43469706 ~ 43469914 (-) True G610500
TU695036 lncRNA downstream 128908 43453115 ~ 43453406 (-) True G610495
TU695033 lncRNA downstream 131827 43450201 ~ 43450487 (-) True G610492
TU695818 lncRNA upstream 3440 43599887 ~ 43600118 (-) True G611167
TU695896 lncRNA upstream 70260 43666707 ~ 43667658 (-) True G611214
TU695898 lncRNA upstream 71966 43668413 ~ 43668921 (-) True G611215
TU695960 lncRNA upstream 171911 43768358 ~ 43768591 (-) True G611275
TU696122 lncRNA upstream 438049 44034496 ~ 44034844 (-) True G611423
XM_021609344.2 mRNA downstream 9991 43545876 ~ 43572323 (-) True brpf3a
XM_021609348.2 mRNA downstream 45277 43526702 ~ 43537037 (-) False LOC110527816
NM_001165230.2 mRNA downstream 67571 43511541 ~ 43514743 (-) True wdr82
XM_036983285.1 mRNA downstream 75842 43492886 ~ 43506472 (-) False LOC110527813
XM_036983286.1 mRNA downstream 75842 43492886 ~ 43506472 (-) True LOC110527813
XM_021609350.2 mRNA upstream 4102 43600549 ~ 43639637 (-) True skib
XM_021609352.2 mRNA upstream 48923 43645370 ~ 43663650 (-) True LOC110527821
XM_036983296.1 mRNA upstream 67362 43663809 ~ 43697252 (-) False kaznb
XM_036983295.1 mRNA upstream 67362 43663809 ~ 43708097 (-) False kaznb
XM_036983294.1 mRNA upstream 67362 43663809 ~ 43751750 (-) False kaznb
TU695139 other downstream 2350 43579093 ~ 43579964 (-) True G610570
TU695150 other downstream 45349 43526691 ~ 43536965 (-) False LOC110527816
TU696390 other upstream 888408 44484855 ~ 44485405 (-) False G611674
TU696391 other upstream 888408 44484855 ~ 44485752 (-) False G611674
TU698246 other upstream 2278518 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 3671876 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 4890600 48487047 ~ 48529168 (-) True G616880

Expression Profile