RNA id: XM_021609352.2


Basic Information

Item Value
RNA id XM_021609352.2
length 3713
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110527821
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43645370 ~ 43663650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGGTTGGAAACTTGATAAAATTACTGTTTAACATATTCCTTGAATTCTATAGCGACTATCATCGGAGGAAATACACACGTTAGTTAATACAGTTTTCAGAGCAGGATTACATTATGCATATTGGGGTGGCAAGATCGTCATCTTGAAAACACCTGCGATATATCAGGTATTGGAGGGAAGTCATTGGTCGTTGAGCGTTCACGACTGGAACAGGTTAGGACAAGTCTCCTCTCCCCAGTCTACAGTGTCGGGTGGTGGGACTCGGTGGGGGGGATGTGTACCAGTGGTGTTCCAGCCAGCTCCAGCCATGGGGTCAGCCGGTCGGGCTCCTCGTATGCCCTGTGTGCCCTTGGGGTGGGGCTCATAGCCCTGGGCATCGTCATGATTGTGTGGTCAATGGTTCCCGGGGATGCTACCCAGAAAATCAAGACTCCAGGCAACTCCAGTATAACAGTGCCAGCAGACCATGGTGAGGATGGGGATGGCGAGGAAGACAAGGAAGCAGCGAAGACCTTATCAATAGCCTATGTGCTGGTGGGGGCAGGggtggccatgctgctgctgtCTATCTGCCTGGGGGTGAGGAACAAGCGGAGGAATCACCAGAGAAGACAGGAGACACGGACCGTAGGAGTCCGCTTCGTGGACCATGTGGCTGGGGAGGCAGGAGAGAATTTAGATGAGCCAGTCCCAGTCTACAACGTGCCCAGCTATGAGGAGGCGGTCACCAGTGGCCAGTTCCCCATCCGCCAGAGCAACTTACGCGGGAGCAACTCCCAGCTGCCTTCCTACGAGGACCTCATCTGTGCTGTGGAAAACGAGGGGGAGGGACCAAGTGCTGACCCAGTTAAGGAGGCTCATCCTAGCAGTCCCACTCCTGAGCCCCAGCCCGCCGCTGCGGCCAACCCCCACAGCAGTAGCCGGGCCAGCCGGATACTACGGCCCAGCAGGGTACGCAGAATCAAGTCTGAGAAACTCCATCTGAAGGACTTTCGTTTTAACATTCGCAACCCTACTGATGCGAAGGTGACCATTGAACCAATCACTCCGCCACCACAGTACGATGGCAAGATACCTGAGTTCTGACAGCGCCCCCTATAGCCTGGGAGTACTAAACGCATTGTTTCAATGTTGAGGAAGACAACACTATTGCTGGATCAGatgtctaataataataatgaggccTAGCTGTTAGTGTTCCTCCTTCACCCTGAGGCAGACCCAGACATTGTTGCTTTGAATCAAGTTGTTTCTCAGCTCCATTTTGACTCGTTTATAGACTTATTTATTCAGGGGCTTATTTTCCTCTCTGTTTAGAACACGGTGGCTGTGTTTTTAACTATCGCCCTACAGAAGGCTTGACGGGGTGCTACGACGGGGTGCTACGCCACTGCTTATAACTATAGGTTAACTGTCGAAGATGTGCCAACTTAAATGATCCAGCTCAGGGAGCCAGCTATGCATTTTGTTTGCTAACTTGCTAAGTGGCTAGCTTGCAAGTTCAAGCTTCTTGGTTATAGCAGACAgtcaatcccctcctggatcaagatccctgctacctaaatttgttttgtgtgtcaaaTGTATATGATTTCAAATGACTTTTTTACGTTGGGAAAGAACTAGCACCCCTTGTGTGCACTGCCGGTAATACTGTATATCACGGTATGGTACAGGAATGGTGTGAAGGTAGGAACCTGGATACCGCACAACCCTGCCCTACAGGACACACTGCACCAAATACTCTCGTTTCACCAAATACTCTCGACTCCTAGTGATCCTTACACCTCTGAAGCCACTTCCATACCCATCAAAATAACTTATCTCTGAACTCTCAATAGCTGTTTTTCCACCAAGTTTTAGATAAGGGGAATAATGGGGTGTTAACACTAGAGATCCTGACCGCCAGTGtgacctccccccccccccttttctctgCATAAGCGTGCTTGGCCCTTCTTCTTCGGTCTGCTGATGCAATCAGGTCCTCAAACACAGGGGAGCGCCAGGGTGGGGAGGTTATTAAAAAGGCATCGGGGTCCTCTGGGTCTGTCGCCACATCAGACATGATGTCTTCAGTTGACCCCACAAATCAATGCTTCCTTTCAGCAGAGTTCTTTTGACCGACTGTCTTGAACACTTGAATCTCAaagctaaaaaaaataaaaataaaagcgcAAGTCTCAACTTTTAAAAACTCAGTACTGTATTTAAAATGTATGGATTGGTTCACATTTATAAACTAACCCGTCTCTGGCGATGCATTCTTCTCTTTTGTATGTTCCGTTCCTTTGCTCCGTCTGGGGTGTCTGACGACTTATGCATCTCTTTCAGTCCAACACCGATTTGCAGCTGCATCTGAGGTGACAGTGTGGTCTGTTAGCAATGGCTATATGCTTCAAAATCCTTGAAAAAATTATAAAATGTAGAATATTGTTGCAGTCAGTCCATGTCTTCGTAGGACTACTCACTTTCAAATTCTGCCATGCGCCACTCTCCATCTGTGTACCTTCATCTCAGCTGACTGACCAGCTGACTGACCAGCTGACTGACCAGCTGACTGACCAGCTGACTGACCAGCTGACTGACCAGCTGACAGTACACAGGTGTTGTGCTGGCGGTTGTTCCTGAGACATTAGTTGACAAAGAAAAGTTCATGCATGATATTTGCACTAAGACTTAATGTAACATATTTGAGAATGCTAAAATAACCATCATACAAGAACCTACCCTGATTGCTTGgttggactcccccccccccccccccaaaaaaaaaaaatattgtcaaATTCCAAGTCATAAGTGATCACATTTGTCTTCACTTTTCTTGCGGCTTATACTACATTTGTTCTCCTCACCAGCATTATTGTGTGCCTTACTGTCCGCTATTAAAACAGAAAAGAGCATCATTAGTAAATTAACATGATTCAAATATTCAATGTTAGCTACCACCAGTGTGCAAGTTGCAAAAGTAAACATTGAACTTACGGATAGCTCATTCCATTTTGCCTGACGAACGCCCGTCATCCTTTCAGGTGCAGTCGCTGCAGAAGTGCTTAGCTGTagctactgctgctgttgttggaATAGCTAGTTGAGCTACTTGTGTCATCAGTCTATTGTCCATATCAGCCACGAGTTGTAGACCGGCATCTAATTCAGCCTGGTTATGACATGAGTTGTTGGAAATCCATGCTCTCATTTGGCGATGCATCATTCCCTCGCACAAAGAGACTTCCGGCAGGTCCCAAAAACGAATTgtgtctatttttttttttaatcaatagcCGCTTGTCTCCTTTGCTGTATTTTACTAGgcttggttagctagctaacgttcaatagCTAGCTACCAAGCTATCCGTTCTTCCGCCAACGTTGGaaggctaacgttagccaactgCTTTGGAAGatttgtagctagctagttaattttACTTGCCAGCAAACAGTAGCTTGTTTTAGTCAACAAAAATCCATGTAACATGATCATGTTAATGTTAGTTATTGACTACATAGCTACAGTAGCAATCTCTGCCAATGTTATAGCTGCTACAGTGCCAGCTAGCAGAGATAGCTATGCTAGCTAGATTTATTTCAAATATaatatgttatttgtcacatgcgccgaatacaacaccaaaccgtgaaatgcttacttacaagcccttaaccaacaatgcagttcaagaaatagagttaagaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695818 lncRNA downstream 45252 43599887 ~ 43600118 (-) True G611167
TU695159 lncRNA downstream 167797 43477270 ~ 43477573 (-) True G610579
TU695043 lncRNA downstream 174130 43470962 ~ 43471240 (-) True G610502
TU695041 lncRNA downstream 175456 43469706 ~ 43469914 (-) True G610500
TU695036 lncRNA downstream 191964 43453115 ~ 43453406 (-) True G610495
TU695896 lncRNA upstream 3057 43666707 ~ 43667658 (-) True G611214
TU695898 lncRNA upstream 4763 43668413 ~ 43668921 (-) True G611215
TU695960 lncRNA upstream 104708 43768358 ~ 43768591 (-) True G611275
TU696122 lncRNA upstream 370846 44034496 ~ 44034844 (-) True G611423
TU696169 lncRNA upstream 472535 44136185 ~ 44178737 (-) True LOC110527840
XM_021609350.2 mRNA downstream 5733 43600549 ~ 43639637 (-) True skib
XM_036984431.1 mRNA downstream 48923 43582314 ~ 43596447 (-) True plch2b
XM_021609344.2 mRNA downstream 73047 43545876 ~ 43572323 (-) True brpf3a
XM_021609348.2 mRNA downstream 108333 43526702 ~ 43537037 (-) False LOC110527816
NM_001165230.2 mRNA downstream 130627 43511541 ~ 43514743 (-) True wdr82
XM_036983296.1 mRNA upstream 159 43663809 ~ 43697252 (-) False kaznb
XM_036983295.1 mRNA upstream 159 43663809 ~ 43708097 (-) False kaznb
XM_036983294.1 mRNA upstream 159 43663809 ~ 43751750 (-) False kaznb
XM_036983293.1 mRNA upstream 159 43663809 ~ 43823887 (-) False kaznb
XR_005052582.1 mRNA upstream 6732 43670382 ~ 43823859 (-) False kaznb
TU695139 other downstream 65406 43579093 ~ 43579964 (-) True G610570
TU695151 other downstream 108405 43526691 ~ 43536965 (-) False LOC110527816
TU696390 other upstream 821205 44484855 ~ 44485405 (-) False G611674
TU696391 other upstream 821205 44484855 ~ 44485752 (-) False G611674
TU698246 other upstream 2211315 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 3604673 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 4823397 48487047 ~ 48529168 (-) True G616880

Expression Profile