RNA id: XR_005052582.1


Basic Information

Item Value
RNA id XR_005052582.1
length 2320
RNA type mRNA
GC content 0.58
exon number 11
gene id kaznb
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43663809 ~ 43823887 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACCCATGCCCAGAATACAAGGCTCCTGCCTACTGCCAACacgcagggaggaagagagagaggggagggaggtgtgACTTTCACCTGCTGGAGAATCCAGCCtgtgtctgctctgctctctgcctTCAGCTACAGAACCTGCTGTCAACCTTGCACAGACATAGAGCAAGATCACAGCACTACTGGAACAGCTGCACTCAgggctctctctctgcttcttccTCCAACACTCCGGCACTCTCTCActcttaacacacacactcacaggcacgTCCAGAACTCTACCACGcaagcgctcacacacacacacacactcacacaggcacaccCCCTCTCTATCTGTGCAGTGAGAAGCTCTGCCCGTGTCGGTGTGAGCGGtggactgtttctctctctggcgGCAGCAGTACTAGCAGCAGGACTGGTCCAGTGGAGGGCAGTCAACTCGCTCTCTCCAGACTCCAGGACAGCTCACGCTCTGGACTTTGGAAGCCCTCAACaagcctctctccctttctttctttctttctttatttttttctttctctttctctcctctttttgcttctctttctctcccctctctctccgcctcgACGTGACGCAGTGTTTCTGACCTTCATCCCCCTCGTGTGCACAGCGTGGGCCAGTGGGACAGCCATGGAGGACACCCTCACCTGCAGCCCTGCCACCTTCTCCCAGGTGTTCGGACGTCAGGGACAGCTCATGCAGGCTAcGGTCCAGTCtctgaacagtctgaatgacCAGATAGTCCACTTCATGATGACCAGGCCCGGCACTCTGTCCCGGGAGGGTGAGGCCTTCATGCCCGGAGAGAGAGACACCTTGAAGAAGTCCATGGCCCTGATGAGGCACCTGCTCATGGACGCACAGGGGAAAATCCTTAAAATGATGGAAGACAACAAGCAGCTGGCTCAGAGGATCGATGGGGCCATCCAGTCTGCCAGTCAGGAGGTGACCAACCTGCGCTCAGAGCTGTCGGCCACCAGCCGTAGACTGGCAGAGCTGGGGGCCAGCAGCCCCCCCTCGCCCCTGGAGAACAACCACCAGCATCACCAGCACAACCACCATGATCATGACAGCCTCCGCTACCAGGATCATAGGCAGAAGTCGGTGGTGAGCGAGATCTGTTACCAGACAGAGATCTCCAGCCTCATGGACTTTGGCACCCCAGACTCCTCGCTCGACAAAGTGTTGCTGCGTGAGGAGGTCGCCCAGCTGCAGGAGGAGGTGCACCTGTTGAGGCAGATGAAGGACATGTTGAGTAAGGACCTGGAGGAGACCCAGGGCTGCTCCTCTCACCTCCTTTCAGCCACTGAGCTCCGTGTGCAGCTGGGAGACAAGGAGCAGGAGCTGGACCGCGCCAAGGAGGCCTTACAAGctaTGAAGTCTGACCGTAAGCGTCTGAAGGTGGAAAAGGCCGACTTGGTGAACCAGATGCAGCAGCTGTACACCACACTGGAGAGCCGGGAGGAGCAGCTCCGAGACTTCATACGCAACTACGACCAGCACCGTAAGGAGAGTGAGGATGCTGTGAAGGCCCTGGCTAAGGAGAAGGACCTgctggagagggagaaatgggATCTGAGGAGGCAGACCAAAGAAGCTACAGAGCAGGCCTGCATCCTGCGTTCTCACATGGACATGAAGGAGAACCGCATCAAAGAGCTCGAGGCTGAGCTCAcaatgGCGAAACAGTCCCTGGCCACGTTGACTAAGGATGTGCCGAAACGCCACTCCCTGGCCATGCCCTCAGAGCCGGTGGTGAACGGCAGTCAGGAGTGGGCGATGCAGGGAGACTTGCCCCTCACCGCTGCCATCCGCCAGAGCCAACAGACCCTCTACCACGGACACACTGTGGACCGCCAGGCGGTGGTCAGGGTCAGTCCCTGTCACTCCCGCCAGCCCTCCATCATCTCGGACGCGTCGGCGGCTGACGGGGATCGGTCGTCCACCCCAAGCGACATCAACTCCCCCCGCCACCGGACCCACTCCCTCTGCAATGTAAGAGCTGCCTGGCCTCCCCGACCAATCTATGGAGGACCTGGAGGACCAGAAGCGTAAGacaaagaagaaggagaagatgaGTCTGGGCTCCCTGTCCCGGGTGTTTGCTCGGGGAAAGCAGCGCAAGTCAATGGACCCGGGCCTGTTTGATGACTCTGACAGCCTCTCCAGCCTATCAACACAACAACCCAGCCTATCAGACGGAGAGGAGCAGCTGGACCGCCTCCAGCAGATGGAGCTCACTCGGAACACGCCCATGTCACTGTGGAAGGCAGGGGCGGTACAAGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695898 lncRNA downstream 1461 43668413 ~ 43668921 (-) True G611215
TU695896 lncRNA downstream 2724 43666707 ~ 43667658 (-) True G611214
TU695818 lncRNA downstream 70264 43599887 ~ 43600118 (-) True G611167
TU695159 lncRNA downstream 192809 43477270 ~ 43477573 (-) True G610579
TU695043 lncRNA downstream 199142 43470962 ~ 43471240 (-) True G610502
TU696122 lncRNA upstream 210637 44034496 ~ 44034844 (-) True G611423
TU696169 lncRNA upstream 312326 44136185 ~ 44178737 (-) True LOC110527840
TU696170 lncRNA upstream 364986 44188845 ~ 44191529 (-) True G611470
TU696186 lncRNA upstream 376689 44200548 ~ 44200845 (-) True G611486
TU696189 lncRNA upstream 381602 44205461 ~ 44205666 (-) True G611489
XM_021609352.2 mRNA downstream 6732 43645370 ~ 43663650 (-) True LOC110527821
XM_021609350.2 mRNA downstream 30745 43600549 ~ 43639637 (-) True skib
XM_036984431.1 mRNA downstream 73935 43582314 ~ 43596447 (-) True plch2b
XM_021609344.2 mRNA downstream 98059 43545876 ~ 43572323 (-) True brpf3a
XM_021609348.2 mRNA downstream 133345 43526702 ~ 43537037 (-) False LOC110527816
XM_021609354.2 mRNA upstream 7832 43831691 ~ 43849517 (-) True prdm2b
XM_021609355.2 mRNA upstream 44921 43868780 ~ 43960544 (-) True LOC110527824
XM_021609361.2 mRNA upstream 145049 43968908 ~ 43976968 (-) False utp3
XM_021609360.2 mRNA upstream 145049 43968908 ~ 43976969 (-) True utp3
XM_021609363.2 mRNA upstream 156022 43979881 ~ 43984460 (-) False fam83e
TU695139 other downstream 90418 43579093 ~ 43579964 (-) True G610570
TU695151 other downstream 133417 43526691 ~ 43536965 (-) False LOC110527816
TU696390 other upstream 660996 44484855 ~ 44485405 (-) False G611674
TU696391 other upstream 660996 44484855 ~ 44485752 (-) False G611674
TU698246 other upstream 2051106 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 3444464 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 4663188 48487047 ~ 48529168 (-) True G616880

Expression Profile