RNA id: XM_021609355.2


Basic Information

Item Value
RNA id XM_021609355.2
length 6300
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110527824
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43868780 ~ 43960544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAATGTCTTGCTGATAAATATAACCTCGAGTGGTACTGTAGTACGAGTATTACTAGCTAAgaaacaacattttttaaatcacGTATGTTGTTGTAATTATAATGATTGAGTAAATatgtgttgttattattattgtgaaCGTAGTTctagcagaggcagagagagagaggggacagtgaagtAGAGGACTAGTTTTTGTGGCTGTGTACATCGCCGAGTGCAGTAATGTAGCCAGTGCAGTTTGTAATTTGCGTCGTTCTCTGAATTGTATTGAAAGTAGTTCcgggtattttttttttgttgtagccTGTGTAGAAAACGAGTCCCGGATGTTGGCTGTCGAGACTGGACTCGAGAGAAAGGCGAACGGGAAAAGGCAGAGAAGCCGAATAGGGACGACACTGGCGAGAGTTCAACGGGTCTTACCTAGGACAAACTCCAAGAGCATAGGCACCTGAGGGACTTTCTTGTTGAAGAAGAGGTGAAAGGGGAGGGGGCAGATACTTCAATACTGCCCTGGACCAAGGTAACGACCTGACATACCCAGGGCCTCACTCAGAGACCGCTAGACAGCTGAGCTGGGGGAGCCTTGCCCTCAGCCTCCACTCACCTCACCTGGCCTGCTTTCCACCCATCAacacccccccgccccccccccagcCTAGCCCAGCCTGCCGTCGCTATGACGTCGGAGCTGGAGAGTAGTCTGACCTCCATGGATTGGCTGCCTCAGCTGACCATGCGGGCTGCCATCCAGAAGGCGGATGCCCAGGGGGGCCACGGGGGGCAGGGCATGGGCAAGAAGAACGCCATGCTGGACCCCAACACCACGCTGGACCAGGAGGAGGTCCAGCAACACAAAGATGGCAAGCCGCCCTACAGCTACGCCAGCCTCATCACCTTCGCCATCAACAGCTCGCCAAAGAAGAAGATGACTCTGAGCGAGATCTACCAGTGGATCTGTGACAACTTCCCTTACTACCGGGAGGCAGGCAGCGGCTGGAAGaaCTCAATACGGCACAATCTGTCATTGAACAAGTGTTTTCTCAAAGTGCCTCGCTCCAAAGACGACCCGGGAAAGggcTCCTACTGGGCCATCGACACCAACCCAAAGGAAGACGCCTTGCCCACACGGCCGAAGAAGAGGCCACGGTCCGGAGAGAGGgcTTCCACACCGTACAGCCTGGAGTCGGAGTCTTTGGGAATGGACTGTATGATCTCTGGAAGTGCCTCTCCAACGCTGGCAATCAACACTGTGACGAACAAGGTGGCATTATACAACCCAGATCAGGATGGGAGTGACAGCCCAAGAAGCAGCCTTAACAACAGCCTGTCTGACCAGAGTCTGGCCTCAGTCAATCTAAACAGTGTTGGCAGCGTGCACAGCTACACACCGgtGACTAACCATCAAGAGTCGGTGTCTCAGTCCATGAGCCTCCAGCAGCCGCCCCAGCCCCAGTACAGTATGCCAGAGAGGGACAAGCAACTCCTCTTCTCCGACTTTGAAGATCTCAGTGCCTCCTTCCGCAGCCTTTACAAGTCTGTCTTTGAGCAGTCCTTCAGCCAACAGGGTTTGATGGGCATGCCGACGGAGTCGTCCCAGCAGACCCATACCGCCTGCTCCTATCAGCACTCCCCCAGTGGCACAATCAGCACCCAGAACAGCCTGACAAACAACCACTCCAGCAGTGGTGGCCAGGTGCCCCTGTCCCACCCTCCCCAGCTCCCTGGCCAGAACACCCACCCGGGCCACGGCTCGCCCCACACACAGCACCTCTCCCAGCACGGCCAGCATGGCCCACACAACCAACATGGCCAACACGGCCAACACACCCAGCACCCACAGCACCCTCCACACTCTCAGCATGGGCAGCACCCCTCACATGCCCAGCACCCGCAGCAGCACACGCCGCACCCCTCCCAACACGCACAGCACACCCCGCATCCCTCCCAACATGCCCAGCAGCACGGCCAGCACCCCTCCCAGCAGCACGGCCAGCACCCCTCCCAGCAGCAGCACCAGAGCCTGGCTCACCAGCCCCATCCTGCCCAGCAACAGATGGCCTGCAACACAGGTCTGCCCTCTGACTGGTACCCCAATCTGGACGCACTGAAAGAGAGCTGCCGTATTGCCAGCAGTTATAACTGGGCTGATGTCGACCTCTCACCTTTTCAAGGACTGAAGGAGAGCATGAGACAAGCGGAGCTGAACAACTGGTCTCTGGAGCCCACGCAGATCGCTGACCTCTGCTCGTCTATCAACCAGTTCTTCACCCGCACTGGTGTCATTCAGCCACAGGGGGCAGTGCAGCCGCCGCCCGTACCCGTATGCCATGGCTCCATGCACCCCAACAAGCCCAGCCAGCACATCACCACAGGAAATCTCTACATGGACTCCAGACAGAGCATGTCTATGATGGGGCCCCCAGGGTACCCCCACATGACAGgACCCCATGCGCAGATGAACCAGCAGCACATGATCCCTCCCAGAAACTTCCAGATGCACCGCATGCCAGCAGATGACATCCAGGATGACTTTGACTGGGACTCCATTGTCTAACGTTAGATGTTCTGCCCCTAACGAGGAGCTTCCAGGAGGTGCAGAGGAGATGAGTGTATGAGGAAGAAGCCAGGCTGAGCTGTACGCTCACAGTAAAAGGAGACGGAACTGTTGTTGGTGGGATACAGAACCATAGAACAGGTGTCACTTTcggaggagagagcaagagagagagacttcagagtcctgacatttttacaaacaaaaacaaaacctacaaaaaaaaaaaaagtgttacttTGAAGACAATCATATTTAGTAAAACATGTTTAAAGTGGTGGCTTATGTGCTTGTCTTGACGAGGCAAGTAGCACACGTTCATGTCAAAACACATGCTCCAGCCTTCATCCCTTGGCCAGCCCTCTCCGGCCAGCCTCCTtcgcccccctccccccctcccagcCAGCAGCTATCCAAAGTCCCCCCCAGGTCCGTCCGTAACTGTTGTGTGATTTTGAGCGACCTTTTTCGGCTTGTTATCCTTCTCGTGTTGACTTTAGGCCTCAGCTGCTTCTTGGATGAGTTTCTCTCTTTTTCGTTGTTCTTTTATGGAAAACGCAGGCAGCCTTTTTGAGTAACGTGATGGTGCTTGTTGGTCACCTTGTGGGTGGACGATGGATCCCCAATGGTGGGTTTATTGGTAGTGAGGTTAGGTTTACAGTAGCTAAGGTTACGTTATGACCAGGGTGTTTTGCATTGAACTCTGCTTGATATAAAGATCACAGATGCTTCATCATAGAGTAATCCATCCAGTTGTCCTTTAACCAACCCATCTggtccataaaaaaaaaaaagaaaagctaATTGTGGAAATTCAGCAACATTACCGGCAGTATTTGTGGTTTTGTCTATTCTGTCAACAATGTATCATACCTTTTTAAATCTCCAATACTCCAACAAGACTGAAAAAGATGCATGAGTGGGTGACTGTAAGAAATCCAGACCTCCTTTTCACCTTCTGTCCTTTGTTTGACTTATTGAATAATACTTAAGACTGCAAGTACAGTCTCATTCTCAATCACTACATCCTTTCACTAGTCATACACAATGAATTTGAGTACATGTGTGCGCCCTATTGTCTGTAGGTGTCTCTTCACCTATTACATTCTGTGCACATGCTGCACAAAGAACTGTAGGATATCTCCCTGTTCTCTTCTGATGCAGGAAATGACAGGCTAACTTCATTTTTCAGTCGTGAGGTCTACTACAAGCCATGCAGTAGGAATGTTCTTCATTCAGATGCTATACATCTGAATCAGTATCGATCTCCCCCAATATCTTCTTTGCTGTGACCCAGTCAGACTTGCACTGCAAGGCAGAGAATATGCTGTAATACAATCatgaacaataaaataaaaaacaatgggaatgtggtgtgtgtgtgtgagagtgtgtgattTTAATGTAATTTTAGGGCTATGATTGTTTGCTGCAATCATCTGCATATGCTATCAATGAGCACAAAACAGAtgcacaaaaacagaaaaatgaACGGTTAGAGGCAGAGATGCATTTTTTTAGGCAGGGTTTCTTATTCAGAGAAATGAGCACTTTCTGGTCAACAGCcaagggggggggagagagaggagaaaaaaatgGGTGGGAGACTAGTAGTGCTGGAAACACTCCTGTTCACCTGTCATGTCCCGTAGTGGCTACTGAATCGGACTTGTCCTGAACCCTCAACATGGTTGCTTGCGCAACCTATAAGGGAGCTTGGGCTGAGTCTAGCACAGTCCAGCTTACCTTTTCACTTTGTTTCTTTCACTACGGATTACCGAGATAAACTAAACGTTCActgttgcccccccccctccccctttagaCAAACTTTAGCTTGGGTTGGATTTTGTTTCTCTCCAttgctttttttttgtgtgtgtgtgtgatctaacGACAATCGCGACAAGGTTTGTAGTATCACATTAACACAGCTGAGCCCAGACACCTTTTGTCTGTTGTAACAGTTAGTATACATGTGTAGATACTGTGTGGCTGTCCTTTTTGAAACAGGTTGCAGAAGACATAAGTGGGAAAGCTTGGATGGAACTAGAGCTTTTCACAAAAACCTATACTGCCAGGCGTGTCTGCAAGGTTGTACAGATCTTTTGCCAGCCAGTTCACTCTGTAAATGGTTCATACTACCCATTTTGTTCTGATATTTTAGGCTAATTGTTTTTTGCTTTTCCTCTGTCTTTATCCATCATGTCTTGCTACTTCTACCTTTTCCTGTAGCTGGTTTTGGGTTAGATTCCCAAATGTTCCTTGTATTTTAAACaaccgttgtgtgtgtgtgtggctcgcTCATGTTCTTGCCTGTGGATACCCATTGAGTGTTTAGGCTTTGTTTATTGGCCCAAATCAGTCAGTCATTTAAAGGGATACTGAGGGATTCGGACAATTgtttttctacttacccagagtccgATGAACTCGCGGATccccttttttatgtctctacgTGCAGTATAAAGGAAGTTGGAGGTAGTTCGCAAGCCTCTGTTAGCACATTGACTGGAAGTCTGCAGGTACGCTAGAGTATGGGTAAGTAGAAAAATGGTTTAATTGCCAGAATCTCATAGTATCCCTTTAAAACAGTCAGAATGCTCATTCAGTTAAAATGCCAAGGTTACTTCAGATTCTCAACCATTGAGTCCTTCATTAGTGAAcaatgaatactttatgaagtaGTAGTGATCGTGAATTTACCATTTGACTGCTAGATAAGGTCAGCGTGGGTCCTGTAGACTCTATTGAGACTGACCCAAGGAATGGGTGTTAGAATGTGGATCTAAATGTGATAGGGAAGTCTTGGCAGCCCATGGTTGGCAGGGCATGTTTGGTATGTTGCATTTCATCACTGGTAATGATGAGGGCACTAATGGAAAAACACTAGAGGACCGTCAAAGGGTATGTAGTTGTTAACCCACCCCCCACAGCGCAAAGAGGAGATGGGAAGGGCGGGGAAGAGCTCATAGATGTGATGCGCGTTAACGAGTAAGGGAAAGACTATGACTGGGTCATGTTTATGCATCACCCTCTTTActgagtctgtgtgtctgtccgtgtgaGAGAGTACATTTTGTTTGAAAAGACTAACTCAATTTTTAAAATACCACTGGAGATGTACCTGCCAGAGAGATTACTATGAtatcaaaaaaaataaaaaaataagcctTGTTACATGGGAGAACTGCCAACAAGTACTGCTGATTGAGGCCTATTTTATTCAGTGCTGGTGTGTTGTGCttcttgtaaatacatgtattttcAATCATCCCTATTTCCTCTTGGGGGTGGGGCATCAAGGCAAGGGAGGGACTTACTCATGAGAGGAGGGGAAAAGAATAGAGTATTTTGTTATTGTCCAATCAGAGGGTGACACagtatgtatatatctatattgTATATATGTGATGAAAATGGTTGGCTTTTTGTGTGACACTACCTTTTACCTGTACTATGGTTCTACATTCAGTGTTTCAATGTTGataatgtttgtttttctgttttttgATTTTTGTCTTGTCATTTCTTGtatttgttttcattttgtcCTTTTTTTGGTTATTGCACGGTTTATTACTTTTGCTGTCCAATGAGGTGACACAGCTACTCTTTGTATTGGTTTAGTGCTGTAAAATAACTCCAGTGTTATTAGAATTGTCTATCCCACCCCCATCCCCAATATGCATGAATGGCACTTAAAGAAATAAAATATGTTAACTTCACTGTGGAA

Function

GO: NA

KEGG:

id description
K09403 FOXJ2_3; forkhead box protein J2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695960 lncRNA downstream 100189 43768358 ~ 43768591 (-) True G611275
TU695898 lncRNA downstream 199859 43668413 ~ 43668921 (-) True G611215
TU695896 lncRNA downstream 201122 43666707 ~ 43667658 (-) True G611214
TU695818 lncRNA downstream 268662 43599887 ~ 43600118 (-) True G611167
TU695159 lncRNA downstream 391207 43477270 ~ 43477573 (-) True G610579
TU696122 lncRNA upstream 73952 44034496 ~ 44034844 (-) True G611423
TU696169 lncRNA upstream 175641 44136185 ~ 44178737 (-) True LOC110527840
TU696170 lncRNA upstream 228301 44188845 ~ 44191529 (-) True G611470
TU696186 lncRNA upstream 240004 44200548 ~ 44200845 (-) True G611486
TU696189 lncRNA upstream 244917 44205461 ~ 44205666 (-) True G611489
XM_021609354.2 mRNA downstream 19263 43831691 ~ 43849517 (-) True prdm2b
XM_036983293.1 mRNA downstream 44893 43663809 ~ 43823887 (-) False kaznb
XR_005052582.1 mRNA downstream 44921 43670382 ~ 43823859 (-) False kaznb
XM_036983298.1 mRNA downstream 44921 43673621 ~ 43823859 (-) True kaznb
XM_036983297.1 mRNA downstream 44926 43672716 ~ 43823854 (-) False kaznb
XM_021609361.2 mRNA upstream 8364 43968908 ~ 43976968 (-) False utp3
XM_021609360.2 mRNA upstream 8364 43968908 ~ 43976969 (-) True utp3
XM_021609363.2 mRNA upstream 19337 43979881 ~ 43984460 (-) False fam83e
XM_021609362.2 mRNA upstream 19337 43979881 ~ 43985397 (-) True fam83e
XM_021609367.2 mRNA upstream 26744 43987288 ~ 43995999 (-) False si:dkey-264d12.4
TU695139 other downstream 288816 43579093 ~ 43579964 (-) True G610570
TU695151 other downstream 331815 43526691 ~ 43536965 (-) False LOC110527816
TU696390 other upstream 524311 44484855 ~ 44485405 (-) False G611674
TU696391 other upstream 524311 44484855 ~ 44485752 (-) False G611674
TU698246 other upstream 1914421 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 3307779 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 4526503 48487047 ~ 48529168 (-) True G616880

Expression Profile