RNA id: XM_021609362.2


Basic Information

Item Value
RNA id XM_021609362.2
length 2811
RNA type mRNA
GC content 0.51
exon number 9
gene id fam83e
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43979881 ~ 43985397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGAACACAAGTTGACATGAGGATTTGAAAGTTGTCCGCTGTGCACTTCAGGGTAAGAAGTGGCGATTCTCTCGAGGAAACAGGGTCGTGACCCGATCGTGGCTGCGAGAGACTGAAAGGATCTGTCAGCAGAGCAGAACGcttggagcagagagagaggcaatgtgagcagagagagaggcaacgtgagcagagagagaggaggaaggtgagagtgagggaggagttgTACGAAAGGGGGAGGAAGAAGATAAGAGAATCTGTTATAAGTTGGAGGTAATCAGTCTTCATATTTTAGGACATGAAGTGTGAGTGTGAAGGGTGAGTTGTCTTTTTCTATCGCCACTATCATTATTTCATCGTTTTTAGTGGTTATGATCTCTTTAGTGATTATATATCATAACTCACTCAGAGCTATTTGTTCCTTACGTCAACAAGGACTTGTGACTTGTTTGTGAAAGGCTGGGAACTTTTTTTGCCTGTGTTTTCAAGATCGTTCCCTTGAAGATATATCGGTGTCCTTACCTTATTTAACTGATTCTGGACAATGCTTTCAATGAGATCTAATGCGAGAATCAAGATTCATTGGTGACTGCGTTTCTCTCAGAGTAAACAGAGGTAGTGAAAAGGAGACTTCTACCGCACACAATTGTCCAGTAACAAATAGCATATCATCACCAGCTAGTGTAATTGGTGTCATGATTTTGGCTGGACCTGTGCTGCCCTAGTAGTGCTTGTAGGTGGgggtgtaccccccccccccccccccccccgcagagTTCAAAAGACAACCCTCATTCCCAAAGACCGAGGAGGCTACACACTGTTCGGCCATGTCAAACTCCCAGGAACAGAGTCTGAATAAGGATGTGATATTTCTGCCGATGTCTGAGTCCAGCCCGGAGTACCTTCACTGCGAGAGGGAGCGCTATGCGCTAGAACGCCTGCTGAGTGCGGGCCCCGAGGCCTTCTACACCACGCTGAGTGCAGAGCACCtcgtccccttcctctccccagaGGAGGTGAACCAGATCAGTGGCAGGGTCAAGGACTACCATAGCAGCTATGAGGAGTTGGAGGGGGCTGAGGAGGGTGGCAACTCAGGTGTGCAAGACCTCTCCGCCAGGTACTTCCCCACCCACTCAGACACCCCTGCACCGTGCCTGGAGCTGGGCTGGCCTGAGGGGGTCACCTGGGTGGGAATGGGACGCGCCATGGTCTACACCAGCCCACCTGCAGATGAACAACCTCCTGTCAGAGAGATCATCAGAAGACTACTGCAGGGGGCTAGCAAGGTTGTTGCCAtggtgacagacagactgacagatagcACTGTGATTGGGGATCTACGCACTATCGCTTCCCGGGGAGTCCCTGTTTACATTGTCCTGAACCAGAGATCCAGCCAGGAGAACCTCCCCCCTCACAGGCTGAGGCATCCGAATATACAGGTTCGTGTTCTTGGAGGAAAGACCTTCTGTTCGCGGGAGGGAAAGATAGTGATGGGGGAATTGAAGGACAACTTCCTCCTGGTGGATTTGGAGACCGTGGTTAATGGCAGCTACAGCTTCACATGGTCAGACGCCCACCTGCACCGGCAGCTGGTGACGGTGCTGAGTGGCCCGGTAGTGGAATCCTTCGACCGAGAGTTCCGGATCCTCTTTGCAGCCTCACTTCCAGTTCCAGACACATGGAAGACCACCAAGGCCCCAATAGATGAGCCCCATCACCACTCAGTGCTCCTGGACCTCAACAACCGGCCCAAGTCTTTCCCCATGGAGCCTATCAACAGccaccctcctcccccacctgCAGACTACACCCTGGATTGGGAGGCCCTGGGCGTCATCCACAGAGGAAGTCCTGTCAATCAACACGGTGAACCCATGGACATGAATGTGAACATGGAGGAACCATTGCAACATTTTACAGCAGTGAACAAAAAGCCACCTTTTGGGGAGGAGTTTTGTCCGAAGGAAGTTGATCACCTCACAACTACGCATGCATACGAGGGGAGAATATGGGCCAACAATGTCAGTTCGGAGAGTGAAATTCAGCTGGATAATCAAACGACTTTTAACGGAGATTTACCCTCTCAGGAAGAGAACCAGCCGTCCGCTGAAACAGAAACCCAACACAGGGTCCAACTCAAAACATATGGCATACACCTCTCCAAACAGAGGAGCTCTGAAGTTGATGAGAAAGAGTCTGTGGGGCCCAGTGAAAACAAAATGGAGACAGGCCCACGAGAAGAAGCTGTGGGCTTTCCctccagagagagaagagatcgtCCAACTAGAAGGGAAGATGTTATGGCAGAGGAGTTAGGCACAGAGGCAACTGAATCTAGAGTCAACTCTGGTGCTGATAGCCCCTCTATATCTAGGAGACCTCTGATATTGAAGGTGCCTCAAAGTGAAAGCTTCAGCTCTTTGAGTGACATCATGAGGAGGCTGCGGCCTCGTCAGAGCTCTTCAACCCAGCTAAGGAGGGGTGCTAAGACCACCGTGTCAGAACTCAGCAGTTCCATGATGGACCTGAGTGTGATGCATACAGACGCAGGCTTTAAAGAGAAGGGACCATCAGTACCACAAGCCAGtTACTTTTCTGACCCTATTCGAATGACCCCAGCCTTCGCCCTGATGAGGAAGAGGAATGATGAGTTTAAAACGGGGATCCTTAGGCCTCCCAAAACCTTTCTGCCTCCTACCACCAGGCCTCGCAGTGGCAGTGTTGGACTCCAGAGGGACTGGAGAAGGCCACAGAGTGACTGGGATCTAGGGAAGGAGGATAGAAAGTGATTGAGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695960 lncRNA downstream 211290 43768358 ~ 43768591 (-) True G611275
TU695898 lncRNA downstream 310960 43668413 ~ 43668921 (-) True G611215
TU695896 lncRNA downstream 312223 43666707 ~ 43667658 (-) True G611214
TU695818 lncRNA downstream 379763 43599887 ~ 43600118 (-) True G611167
TU695159 lncRNA downstream 502308 43477270 ~ 43477573 (-) True G610579
TU696122 lncRNA upstream 49099 44034496 ~ 44034844 (-) True G611423
TU696169 lncRNA upstream 150788 44136185 ~ 44178737 (-) True LOC110527840
TU696170 lncRNA upstream 203448 44188845 ~ 44191529 (-) True G611470
TU696186 lncRNA upstream 215151 44200548 ~ 44200845 (-) True G611486
TU696189 lncRNA upstream 220064 44205461 ~ 44205666 (-) True G611489
XM_021609360.2 mRNA downstream 2912 43968908 ~ 43976969 (-) True utp3
XM_021609361.2 mRNA downstream 2913 43968908 ~ 43976968 (-) False utp3
XM_021609355.2 mRNA downstream 19337 43868780 ~ 43960544 (-) True LOC110527824
XM_021609354.2 mRNA downstream 130364 43831691 ~ 43849517 (-) True prdm2b
XM_036983298.1 mRNA downstream 156022 43673621 ~ 43823859 (-) True kaznb
XM_021609367.2 mRNA upstream 1891 43987288 ~ 43995999 (-) False si:dkey-264d12.4
XM_021609365.2 mRNA upstream 1891 43987288 ~ 44000565 (-) True si:dkey-264d12.4
XM_036983305.1 mRNA upstream 71149 44056546 ~ 44061223 (-) False LOC110527833
XM_021609376.2 mRNA upstream 71149 44056546 ~ 44069338 (-) False LOC110527833
XM_036983302.1 mRNA upstream 71149 44056546 ~ 44069338 (-) False LOC110527833
TU695139 other downstream 399917 43579093 ~ 43579964 (-) True G610570
TU695151 other downstream 442916 43526691 ~ 43536965 (-) False LOC110527816
TU696390 other upstream 499458 44484855 ~ 44485405 (-) False G611674
TU696391 other upstream 499458 44484855 ~ 44485752 (-) False G611674
TU698246 other upstream 1889568 45874965 ~ 45875700 (-) True G613411
TU700211 other upstream 3282926 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 4501650 48487047 ~ 48529168 (-) True G616880

Expression Profile