RNA id: XM_021609372.2


Basic Information

Item Value
RNA id XM_021609372.2
length 3397
RNA type mRNA
GC content 0.52
exon number 20
gene id si:dkey-264d12.5
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44002556 ~ 44035143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGCGTTCACGACTCCGAAACAATCCACCCAGTCAAAAATAACGGTAGCCTATGATGGGAAGGGAGTGAGACCAACTGTGCACTGATCCGTGGCATACCGAGACAGACGAAAAATAACTGCGATCATGACACGTAAAATTAACAATACAATAGATAAATGTATCATGTTTTGAAATAAGGTTTATAAAGAGAAGGGTCAGAGAATGCCTTGTAAAAAAACGTATCCTTGTTTGGAAATAGTGCTGGCTTGGGAGTCGTCGTCCATGCGTCTCGCTGGATGAGTGTTTCTACATTGTTTCGAGTTGTCTCGCCTATCATGGAAGATACGGAGCAGAGTGAGGAGGAGCTGGAGCATGTGGTCCTCTGTCTGCAGGAGGAGGGCATGGCCCCCGGGGCCTCAGTGAAGGAGCAGCTGGGTTTCCTATGGAGGCTGTTCCAGCACAGCGAGGGTCGCCTCGTCGCCGTGACCCATGACTTGGACAGCCTACGAGCACGCCACTCTGCCGAGATGGCCGAGGTGCAGAGGTACCTGGAGCACATCCGTAGCCTATCAGAGAAGAGGGATGCCCTGGCTCAGGAGTACGAGCAGGAGAATGAGGTCCTCAGGGCCCAGCTGCAACGCCTGACACTCCAGCAAGatgcccAGATGAATGAGGTGGCTGAGATGTTGTACCAGGAGGGCCTGGCAGAAGTGATTCCCAGCAGCCACAGTGAACAGGTGGCCTACCTGCTGGTGGAGAGGGCCTCCCTGCTGGAGAGACCTGATGACCCCCAGGCCCCGCAAGTCCCCGATGCCCAGGCAGGCACCCCCTCTGCCAGCCAGCAGGAGACACAGTCCCAGACTCAGTGCACCAAAGAGAGCATGGACCAGGGGGCACCCTCACGTGGCCAGAGCTCATGGAAGAGGCTCTTTGGACTCCGCAAGGCAGCTCAGAGCAAACAGGCGTTGGCCTCAgTTGAGCTCAGGCCGGGGTCAGGGCTCGGTGTGGAGCGTGAGTGGGCCCGTctagagagagacctggaggaggCATCACGCCGCTTGGCCATGGCCCACAGAGAGATCCGACGTCTGACCGATGAGCTAGAGTCAGCCCGCATGACCCAGAGTGCCTATGAGCCAGAGCTGCAGGGAGCCCAGGAGGAGGTAGAACAGCTCAGGCAGGAAGTGGAAAAGCTCAAGAAATGTGACGTGGTGGAGTTGCGTAAGGCCACGGAGCTGAATGATCGTCTGGACCAGGAGATCAGAGCCCTCAGGACAAGGGTGCGAACCATGGACGCAGAGAGAAAGACCCTCCTAGAGACGCTGGAGAAAATGAAGCACTCTGACAACGCAGCTAAGATCCACCCAGAAGCACTGCAGCTTAACTTGGCTAAGGGAGAAGGGATAGCTGCCCCTCAGATGCACACCGTCTGTCTCCAGACAGAACTACTGCTCCTGGACCAGGTCAAGACCCATGAAAGACGCCTCCAGCAGTCCGAGACCAAGGACAAGTTGAACGATGTGCGGCATCAACTGCAGGGGCTGCAGGAGAAATACGATGAGCTGCTGAATGTTACGAAGAAGGCAGAGGAGTACGAGGACTACGAGGAGCTGAAgaagcagagagaagaggaggagaaggttcTGGAGCTGCTGATGGATAAGAccgaggaggtggaggaggagtatGAGGAACTGAAGACTAAAAAAGAGGAGGCGGAGAGGGTGTATGAGGAGCTGAAGATTAAGATGGACGAGGAGAAGAAGGAATATGAACATCTGGAGAATATGAGGGAGGAGCTGGAGTTGAAGCTGGATGAAGCTCTTGGCCGGAGCAAGAAGCAGCATAGTAGTCAGGCGGTGGAACTGCAGCTTAAGATGCAGAGTCTGCAGCAGCAGCTGAAGAGCACAGAGCACCAGCTGAACGTGGAAAGAAACCGCAACACAGAGTCTGGCCAGCAAGAGGAGGCAGCAAGATACACGGCCCTTAGGACTCAGGACAACCAGCTCCACAGGAGGATgtgggagcagagggaggaggagctgCAGGATGAGGGGTGTTCCCTGCGAGAGGTGGAAGCCTCCCTGAACTGCACTAACTCAGAGCTGAGCCTCCGATTTAAAGGCCAGCAGACACAGCTAGATGTCCTACAGAGTCAGACAGGCACAGCCAGCCAGGAGATTCCTGCTGATTATGTAAAGCTGAAGGAATGCCTGGAGGCCAGGCAGGAGGATTGTGAGAAACTAACAGAGGAGCTCATGGAAGTTCTCACGTGCCTGGATTTACAGAAAAGCAAGAACGCCGAGAAGCGATCTCAGCACAAAGCCAAAATGCGGCGAGCCAAACAGATTTATTTGAAGGAGACAGGATGTCGTGATGAGAGGATTCAAAGCCTTGAGAGAGACCTGGCTCTCGCCTTAACCTCATCCGCCAGGGAGAAAGAGATGATAGTGAACATGAATGAGGAAAATGGGAAACTGCTGGCAGAGAAGAGGGATCTGCTCGGAAAACTGAATGACGTGGAGGAGAAAACAAACAAGAGTGTGCTTGCTGCCACTACCACTCAATGCAGTGTGGATTTCCTGGAGAAGGAAAGCAAGCACTTACAGGACACCATAGTGGAGATGTCCGGTCTGATTCCTAACGGAGCAGCATTGCAGCACGCACTAAAGAATCTCCATAAAGCACGCAGCGCTAATGTACAGgaaTCGAAGAAAATGTCTCATTTTGAGAGCATACTGCTAACGTCTAGCCTTCTGGAAACCAGAGTTCTGCCTGGAGCATTTGACATGAGAAGCCATTTGGACAACATCTATAGGTGCAAGGCCAGTCACACAGAGGAAGCCACCTCTCCACGCTCTTCACTGACCTCTCCACGCTCTTCACTCACCTCTCCACGCTCTACCCTGACCACACAGCCTGTGGAGATGGGCTATCTGAACCTGACCTCATCCCCAGGGGTGTGGGACAGCAATCTGAACCTGACGCCCCCCTCTGACCAGGGCTGACCACAACCTCTGACGCACTGAGCTCGGACAGTGATGAGGTGTGAGGACAGACAGGCAAATACAGCCAAACTTAAGAAGGGAATGCTGCAATGAATAATACCATGACAGGACtagttgttttatttttaaatgacatATATTCTATGCATTGTGGTTTAAGTCTATTTAAAGTTCATTTTGTGTCATGATATAACTTTTgatgttttcacattgtcagtatttaaaggggcaatcagcagtcgCTATGTCCACTTTTGGACTTAAATGAATGACATGTATCCATTGATTCTTCAAGAATATAACAAATGCCTCTTGAGctcagttcaactgtcatacAACTGCTTGTTTTACtcccaatgtttgtaaacaaacacaaaacatggttaaaactataattttgatatcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU695367 lncRNA upstream 129933 43867202 ~ 43872623 (+) True G610764
TU695209 lncRNA upstream 170676 43829838 ~ 43831880 (+) False G610622
TU695210 lncRNA upstream 170676 43830860 ~ 43831880 (+) True G610622
TU695217 lncRNA upstream 328781 43623596 ~ 43673775 (+) False G610627
TU695491 lncRNA downstream 23964 44059107 ~ 44064534 (+) True G610879
TU695493 lncRNA downstream 25225 44060368 ~ 44066058 (+) True G610881
TU695502 lncRNA downstream 34499 44069642 ~ 44071873 (+) False G610889
TU695503 lncRNA downstream 34499 44069642 ~ 44071873 (+) False G610889
TU695504 lncRNA downstream 34499 44069642 ~ 44071873 (+) True G610889
XM_021609357.2 mRNA upstream 35687 43964477 ~ 43966869 (+) False ppcs
XM_021609356.2 mRNA upstream 35687 43964510 ~ 43966869 (+) False ppcs
XM_036983299.1 mRNA upstream 35687 43964644 ~ 43966869 (+) True ppcs
XM_036983292.1 mRNA upstream 420245 43567660 ~ 43582311 (+) False si:dkey-183j2.10
XM_021609378.2 mRNA downstream 50722 44085865 ~ 44092535 (+) False LOC110527834
XM_036983308.1 mRNA downstream 50722 44085865 ~ 44092535 (+) True LOC110527834
XR_002474166.2 mRNA downstream 129113 44164256 ~ 44178065 (+) False LOC110527839
XM_021609387.2 mRNA downstream 180391 44215534 ~ 44261277 (+) False mmel1
XM_021609394.2 mRNA downstream 241777 44276920 ~ 44290296 (+) False slc45a1
TU695211 other upstream 170676 43829004 ~ 43831880 (+) False G610622
TU695128 other upstream 417660 43584020 ~ 43584896 (+) True G610563
TU694950 other upstream 591750 43410391 ~ 43410806 (+) True G610436
TU693833 other upstream 1181311 42820956 ~ 42821245 (+) True G609436
TU692673 other upstream 2171748 41827211 ~ 41830808 (+) True G608390
TU698525 other downstream 2243591 46278734 ~ 46279333 (+) True G613664
TU699203 other downstream 2596979 46632122 ~ 46637954 (+) True LOC110528958
TU700614 other downstream 3804245 47839388 ~ 47839722 (+) True G615624
TU702226 other downstream 4791684 48826827 ~ 48827227 (+) True G617133
TU703098 other downstream 5537177 49572320 ~ 49620168 (+) False tafa4b

Expression Profile